Wall clock time and date at job start Tue Mar 31 2020 21:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00016 * 2 1 4 4 H 1.48499 * 109.46939 * 269.99832 * 3 2 1 5 5 H 1.48498 * 109.47088 * 30.00319 * 3 2 1 6 6 H 1.48505 * 109.47094 * 149.99939 * 3 2 1 7 7 C 1.38811 * 119.99748 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99897 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00275 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00355 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47162 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.46874 * 60.00642 * 11 10 9 13 13 C 1.55324 * 109.40022 * 180.02562 * 11 10 9 14 14 N 1.45127 * 109.25870 * 187.88844 * 13 11 10 15 15 C 1.34779 * 118.75926 * 90.85115 * 14 13 11 16 16 O 1.21280 * 119.99449 * 359.73658 * 15 14 13 17 17 C 1.50696 * 119.99917 * 179.73296 * 15 14 13 18 18 C 1.53001 * 109.46861 * 180.02562 * 17 15 14 19 19 C 1.52999 * 109.47051 * 180.02562 * 18 17 15 20 20 C 1.53001 * 109.47051 * 179.97438 * 19 18 17 21 21 C 1.54893 * 110.48625 * 289.77452 * 20 19 18 22 22 C 1.54887 * 102.74533 * 203.38022 * 21 20 19 23 23 C 1.54266 * 104.19888 * 37.94403 * 22 21 20 24 24 C 1.53872 * 106.59640 * 336.38805 * 23 22 21 25 25 C 1.47507 * 122.48364 * 270.57907 * 14 13 11 26 26 C 1.53577 * 111.03179 * 41.88012 * 25 14 13 27 27 C 1.51536 * 109.57994 * 39.97765 * 26 25 14 28 28 O 1.38014 * 109.47360 * 300.00489 * 11 10 9 29 29 H 0.97009 * 119.99724 * 359.97438 * 1 2 3 30 30 H 0.97007 * 120.00211 * 0.02562 * 9 7 2 31 31 H 1.09000 * 109.46702 * 60.00266 * 10 9 7 32 32 H 1.08991 * 109.47172 * 300.00495 * 10 9 7 33 33 H 1.09002 * 109.50949 * 68.01236 * 13 11 10 34 34 H 1.09002 * 109.70245 * 307.87827 * 13 11 10 35 35 H 1.08998 * 109.46896 * 60.00430 * 17 15 14 36 36 H 1.08994 * 109.47366 * 300.00083 * 17 15 14 37 37 H 1.08998 * 109.47111 * 60.00444 * 18 17 15 38 38 H 1.08994 * 109.47102 * 300.00126 * 18 17 15 39 39 H 1.09008 * 109.46811 * 60.00341 * 19 18 17 40 40 H 1.08994 * 109.47244 * 300.00007 * 19 18 17 41 41 H 1.08998 * 110.43312 * 52.46399 * 20 19 18 42 42 H 1.09001 * 110.75228 * 85.06757 * 21 20 19 43 43 H 1.09000 * 110.75571 * 321.69391 * 21 20 19 44 44 H 1.09001 * 110.48816 * 279.26329 * 22 21 20 45 45 H 1.09004 * 110.48531 * 156.62545 * 22 21 20 46 46 H 1.09003 * 110.03179 * 95.67576 * 23 22 21 47 47 H 1.09005 * 110.03005 * 217.10316 * 23 22 21 48 48 H 1.09002 * 110.03208 * 119.28196 * 24 23 22 49 49 H 1.09000 * 110.03462 * 240.66592 * 24 23 22 50 50 H 1.08999 * 109.17148 * 162.27802 * 25 14 13 51 51 H 1.09004 * 109.16742 * 281.48144 * 25 14 13 52 52 H 1.09000 * 109.45573 * 160.01348 * 26 25 14 53 53 H 1.09003 * 109.44833 * 279.94703 * 26 25 14 54 54 H 1.09000 * 109.59121 * 28.37997 * 27 26 25 55 55 H 1.09001 * 109.58906 * 148.82521 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.0636 -4.8197 0.0012 12 1 0.4367 -4.7621 -0.8886 13 6 1.8419 -6.1639 0.0018 14 7 0.9072 -7.2582 -0.1856 15 6 0.6431 -7.6780 -1.4388 16 8 1.1794 -7.1398 -2.3841 17 6 -0.3183 -8.8161 -1.6653 18 6 -0.4382 -9.0914 -3.1655 19 6 -1.4148 -10.2465 -3.3956 20 6 -1.5352 -10.5214 -4.8959 21 6 -2.2921 -9.3676 -5.5994 22 6 -2.8421 -10.0488 -6.8771 23 6 -3.2480 -11.4613 -6.4081 24 6 -2.4171 -11.7618 -5.1484 25 6 0.2398 -7.9322 0.9440 26 6 -0.2242 -6.9148 1.9967 27 6 -0.7808 -5.6866 1.3052 28 8 0.2705 -4.7462 1.1283 29 1 -0.4850 0.8401 0.0004 30 1 0.3555 -2.3881 -0.0002 31 1 2.6845 -3.7145 0.8906 32 1 2.6846 -3.7145 -0.8893 33 1 2.3572 -6.2857 0.9546 34 1 2.5712 -6.1666 -0.8082 35 1 -1.2967 -8.5502 -1.2650 36 1 0.0503 -9.7090 -1.1607 37 1 0.5402 -9.3574 -3.5655 38 1 -0.8067 -8.1985 -3.6705 39 1 -2.3933 -9.9800 -2.9957 40 1 -1.0468 -11.1395 -2.8906 41 1 -0.5484 -10.6586 -5.3380 42 1 -1.6092 -8.5580 -5.8567 43 1 -3.1074 -9.0029 -4.9746 44 1 -2.0671 -10.1086 -7.6413 45 1 -3.7101 -9.5079 -7.2543 46 1 -4.3111 -11.4840 -6.1684 47 1 -3.0245 -12.1916 -7.1859 48 1 -3.0769 -11.9303 -4.2973 49 1 -1.7909 -12.6384 -5.3144 50 1 -0.6248 -8.4822 0.5724 51 1 0.9366 -8.6320 1.4055 52 1 -0.9987 -7.3635 2.6187 53 1 0.6216 -6.6276 2.6215 54 1 -1.1878 -5.9671 0.3337 55 1 -1.5660 -5.2458 1.9194 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202174315.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:27 Heat of formation + Delta-G solvation = -114.992038 kcal Electronic energy + Delta-G solvation = -30172.358895 eV Core-core repulsion = 26207.554780 eV Total energy + Delta-G solvation = -3964.804115 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.65640 -39.84140 -39.24275 -36.91313 -36.23349 -35.34516 -34.28118 -32.66380 -31.40571 -30.05005 -29.52753 -28.01792 -26.89904 -26.11232 -24.44029 -22.99690 -22.44918 -22.28801 -21.18318 -20.69033 -19.80644 -19.27601 -18.34665 -17.74869 -17.53256 -17.12229 -16.72933 -16.51987 -16.32904 -15.97958 -15.61225 -15.32440 -15.16449 -14.86208 -14.75570 -14.55221 -14.22707 -13.96996 -13.87080 -13.75465 -13.47433 -13.34411 -13.10012 -12.94679 -12.78053 -12.60942 -12.46586 -12.26505 -12.14351 -12.08325 -12.02385 -11.91554 -11.83881 -11.70444 -11.51970 -11.46997 -11.42193 -11.28318 -11.15623 -10.99631 -10.78269 -10.55376 -9.63032 -9.03133 -7.95494 -5.25518 1.45161 1.48804 1.57078 1.59565 1.96718 2.55102 2.71944 3.37518 3.46783 3.62767 3.69635 3.77079 3.82217 3.87219 3.97938 4.06990 4.08499 4.11459 4.16150 4.29733 4.36524 4.41620 4.48726 4.49415 4.55689 4.59081 4.63930 4.67625 4.69068 4.73854 4.79188 4.83495 4.86142 4.87215 4.92375 4.95597 5.02760 5.07679 5.08261 5.13334 5.16682 5.20951 5.26334 5.31783 5.38957 5.43623 5.45381 5.53364 5.55588 5.62243 6.24861 6.31824 6.74920 7.16402 7.31047 8.05124 8.30935 9.28439 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012792 B = 0.002179 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.259529 B =12844.109381 C =14189.268274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.080 4.080 3 Si 0.981 3.019 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.267 1.267 7 C -0.249 4.249 8 H 0.078 0.922 9 N -0.740 5.740 10 C 0.162 3.838 11 C 0.106 3.894 12 H 0.017 0.983 13 C 0.094 3.906 14 N -0.612 5.612 15 C 0.494 3.506 16 O -0.588 6.588 17 C -0.130 4.130 18 C -0.102 4.102 19 C -0.101 4.101 20 C -0.094 4.094 21 C -0.125 4.125 22 C -0.129 4.129 23 C -0.125 4.125 24 C -0.118 4.118 25 C 0.100 3.900 26 C -0.157 4.157 27 C 0.063 3.937 28 O -0.397 6.397 29 H 0.252 0.748 30 H 0.374 0.626 31 H 0.033 0.967 32 H 0.032 0.968 33 H 0.100 0.900 34 H 0.076 0.924 35 H 0.115 0.885 36 H 0.126 0.874 37 H 0.051 0.949 38 H 0.044 0.956 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.064 0.936 42 H 0.049 0.951 43 H 0.067 0.933 44 H 0.060 0.940 45 H 0.064 0.936 46 H 0.066 0.934 47 H 0.065 0.935 48 H 0.072 0.928 49 H 0.066 0.934 50 H 0.115 0.885 51 H 0.093 0.907 52 H 0.122 0.878 53 H 0.072 0.928 54 H 0.042 0.958 55 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.574 -31.618 -2.369 32.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.272 4.272 3 Si 0.809 3.191 4 H -0.213 1.213 5 H -0.219 1.219 6 H -0.192 1.192 7 C -0.380 4.380 8 H 0.096 0.904 9 N -0.382 5.382 10 C 0.035 3.965 11 C 0.046 3.954 12 H 0.035 0.965 13 C -0.030 4.030 14 N -0.344 5.344 15 C 0.285 3.715 16 O -0.468 6.468 17 C -0.169 4.169 18 C -0.140 4.140 19 C -0.139 4.139 20 C -0.112 4.112 21 C -0.163 4.163 22 C -0.167 4.167 23 C -0.163 4.163 24 C -0.155 4.155 25 C -0.020 4.020 26 C -0.195 4.195 27 C -0.012 4.012 28 O -0.316 6.316 29 H 0.060 0.940 30 H 0.205 0.795 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.118 0.882 34 H 0.095 0.905 35 H 0.133 0.867 36 H 0.144 0.856 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.083 0.917 42 H 0.068 0.932 43 H 0.086 0.914 44 H 0.079 0.921 45 H 0.083 0.917 46 H 0.085 0.915 47 H 0.084 0.916 48 H 0.091 0.909 49 H 0.085 0.915 50 H 0.133 0.867 51 H 0.111 0.889 52 H 0.140 0.860 53 H 0.090 0.910 54 H 0.061 0.939 55 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.096 -31.146 -2.687 31.850 hybrid contribution 0.125 1.406 -0.514 1.502 sum -5.971 -29.740 -3.201 30.502 Atomic orbital electron populations 1.69860 1.06787 1.26098 1.59396 1.25680 0.96529 1.01402 1.03557 0.85035 0.77683 0.78911 0.77475 1.21344 1.21885 1.19170 1.19690 0.91586 0.85270 1.41471 0.90436 1.42407 1.05620 1.00888 1.89277 1.20763 0.93207 0.84244 0.98326 1.21949 0.91715 0.94636 0.87099 0.96494 1.22155 0.92226 0.85237 1.03427 1.48133 1.44556 1.34269 1.07439 1.21760 0.82622 0.85135 0.81997 1.90708 1.53674 1.59631 1.42756 1.21806 0.99191 0.96586 0.99300 1.21314 0.99842 0.98826 0.94054 1.21590 0.99286 0.97697 0.95304 1.22010 0.98650 0.94941 0.95640 1.22601 0.99343 0.97429 0.96912 1.22387 1.00530 0.96362 0.97398 1.22147 1.00088 0.96367 0.97693 1.22194 0.98079 0.97252 0.98007 1.22357 0.98828 0.94632 0.86207 1.22440 1.03236 0.95283 0.98536 1.22420 0.89052 0.90006 0.99760 1.86358 1.45821 1.56818 1.42640 0.93978 0.79474 0.94933 0.95011 0.88184 0.90524 0.86740 0.85642 0.93011 0.93748 0.90866 0.90132 0.91725 0.93174 0.91426 0.92096 0.91711 0.91509 0.91611 0.90880 0.91472 0.86719 0.88853 0.86008 0.90963 0.93917 0.88855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.90 13.06 21.65 0.28 -62.62 16 2 C -0.08 -4.86 5.50 84.86 0.47 -4.40 16 3 Si 0.98 48.39 29.55 68.60 2.03 50.41 16 4 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 5 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 6 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 7 C -0.25 -14.95 9.99 84.03 0.84 -14.11 16 8 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 9 N -0.74 -41.91 5.49 -343.47 -1.88 -43.79 16 10 C 0.16 7.35 5.95 86.38 0.51 7.86 16 11 C 0.11 4.06 2.74 31.39 0.09 4.14 16 12 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 13 C 0.09 2.77 4.91 87.43 0.43 3.20 16 14 N -0.61 -14.03 2.18 -816.88 -1.78 -15.81 16 15 C 0.49 12.63 7.63 87.66 0.67 13.29 16 16 O -0.59 -21.39 15.41 -3.03 -0.05 -21.44 16 17 C -0.13 -1.91 4.04 29.85 0.12 -1.79 16 18 C -0.10 -1.81 4.38 30.59 0.13 -1.68 16 19 C -0.10 -1.19 4.56 30.59 0.14 -1.05 16 20 C -0.09 -1.28 2.86 -9.72 -0.03 -1.31 16 21 C -0.13 -2.01 5.67 31.89 0.18 -1.83 16 22 C -0.13 -1.82 6.83 31.67 0.22 -1.60 16 23 C -0.13 -1.44 6.80 31.32 0.21 -1.23 16 24 C -0.12 -1.28 6.37 31.32 0.20 -1.08 16 25 C 0.10 1.29 5.99 86.38 0.52 1.81 16 26 C -0.16 -2.46 5.79 30.31 0.18 -2.29 16 27 C 0.06 1.62 6.38 71.50 0.46 2.08 16 28 O -0.40 -14.71 9.18 -117.85 -1.08 -15.79 16 29 H 0.25 15.63 8.31 -92.70 -0.77 14.86 16 30 H 0.37 22.78 7.53 -92.70 -0.70 22.08 16 31 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.10 2.55 8.11 -2.39 -0.02 2.53 16 34 H 0.08 2.50 7.28 -2.39 -0.02 2.48 16 35 H 0.11 1.21 7.41 -2.39 -0.02 1.19 16 36 H 0.13 1.03 8.04 -2.39 -0.02 1.01 16 37 H 0.05 1.08 8.10 -2.39 -0.02 1.06 16 38 H 0.04 1.03 7.51 -2.39 -0.02 1.01 16 39 H 0.07 0.75 8.02 -2.38 -0.02 0.73 16 40 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.05 0.96 8.06 -2.39 -0.02 0.94 16 43 H 0.07 1.07 7.96 -2.39 -0.02 1.05 16 44 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.06 0.87 8.14 -2.38 -0.02 0.86 16 46 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 47 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 48 H 0.07 0.67 7.84 -2.39 -0.02 0.65 16 49 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 50 H 0.11 0.79 5.88 -2.39 -0.01 0.78 16 51 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 52 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 53 H 0.07 1.34 8.01 -2.39 -0.02 1.32 16 54 H 0.04 1.10 7.40 -2.39 -0.02 1.09 16 55 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -80.21 421.72 2.98 -77.23 By element: Atomic # 1 Polarization: 31.62 SS G_CDS: 0.14 Total: 31.76 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: 5.33 Total: 0.04 kcal Atomic # 7 Polarization: -118.83 SS G_CDS: -3.38 Total: -122.21 kcal Atomic # 8 Polarization: -36.10 SS G_CDS: -1.13 Total: -37.23 kcal Atomic # 14 Polarization: 48.39 SS G_CDS: 2.03 Total: 50.41 kcal Total: -80.21 2.98 -77.23 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202174315.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.761 kcal (2) G-P(sol) polarization free energy of solvation -80.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds