Wall clock time and date at job start Tue Mar 31 2020 20:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46903 * 110.99834 * 2 1 4 4 C 1.46900 * 111.00346 * 123.95608 * 2 1 3 5 5 C 1.52999 * 109.47224 * 66.04367 * 4 2 1 6 6 C 1.50697 * 109.47492 * 180.02562 * 5 4 2 7 7 O 1.21286 * 119.99448 * 359.97438 * 6 5 4 8 8 N 1.34771 * 120.00278 * 180.02562 * 6 5 4 9 9 C 1.47748 * 134.92480 * 359.97438 * 8 6 5 10 10 C 1.54561 * 85.84080 * 154.12210 * 9 8 6 11 11 H 1.09000 * 113.35963 * 139.07231 * 10 9 8 12 12 C 1.51679 * 111.76503 * 267.67607 * 10 9 8 13 13 C 1.51627 * 113.71212 * 125.34631 * 12 10 9 14 14 N 1.46484 * 111.12945 * 312.96624 * 13 12 10 15 15 C 1.46893 * 111.00579 * 189.65241 * 14 13 12 16 16 C 1.50706 * 109.47176 * 66.04463 * 15 14 13 17 17 O 1.21295 * 119.99584 * 0.02562 * 16 15 14 18 18 N 1.34774 * 120.00020 * 180.02562 * 16 15 14 19 19 C 1.37095 * 119.99737 * 180.02562 * 18 16 15 20 20 H 1.08004 * 120.00254 * 0.02562 * 19 18 16 21 21 C 1.38949 * 119.99943 * 179.97438 * 19 18 16 22 22 N 1.31413 * 120.00099 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00243 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.46883 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47233 * 120.00270 * 23 21 19 26 26 H 1.48501 * 109.47364 * 240.00343 * 23 21 19 27 27 C 1.46930 * 110.16375 * 66.28822 * 14 13 12 28 28 C 1.49186 * 134.95662 * 179.91681 * 8 6 5 29 29 H 1.09001 * 112.81390 * 92.98243 * 28 8 6 30 30 H 1.09003 * 109.47209 * 296.04208 * 1 2 3 31 31 H 1.08994 * 109.47804 * 56.04688 * 1 2 3 32 32 H 1.08998 * 109.47157 * 176.04826 * 1 2 3 33 33 H 1.09004 * 109.46803 * 183.95639 * 3 2 1 34 34 H 1.08999 * 109.46978 * 303.95281 * 3 2 1 35 35 H 1.08998 * 109.46772 * 63.95831 * 3 2 1 36 36 H 1.09001 * 109.46909 * 306.04656 * 4 2 1 37 37 H 1.08999 * 109.47264 * 186.04739 * 4 2 1 38 38 H 1.09004 * 109.47016 * 59.99538 * 5 4 2 39 39 H 1.09004 * 109.46895 * 300.00527 * 5 4 2 40 40 H 1.08994 * 113.81252 * 39.89041 * 9 8 6 41 41 H 1.09001 * 113.92367 * 268.35975 * 9 8 6 42 42 H 1.09000 * 108.63705 * 4.25065 * 12 10 9 43 43 H 1.09005 * 108.53087 * 246.36094 * 12 10 9 44 44 H 1.09004 * 109.14839 * 192.54861 * 13 12 10 45 45 H 1.08998 * 109.14982 * 73.39300 * 13 12 10 46 46 H 1.09001 * 109.46739 * 306.04871 * 15 14 13 47 47 H 1.09000 * 109.47767 * 186.05130 * 15 14 13 48 48 H 0.96994 * 119.99756 * 0.02562 * 18 16 15 49 49 H 0.96999 * 120.00288 * 179.97438 * 22 21 19 50 50 H 1.08993 * 109.43512 * 55.59550 * 27 14 13 51 51 H 1.09002 * 109.43742 * 175.47532 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.6315 -2.2426 0.9703 6 6 2.1711 -3.0284 2.1375 7 8 2.7866 -2.4630 3.0164 8 7 1.9705 -4.3594 2.2042 9 6 1.2925 -5.3565 1.3504 10 6 2.2614 -6.3853 1.9763 11 1 1.7865 -7.3371 2.2144 12 6 3.5188 -6.5521 1.1446 13 6 4.7999 -6.3310 1.9250 14 7 4.7229 -5.1107 2.7316 15 6 6.0332 -4.7746 3.3044 16 6 6.9879 -4.4122 2.1961 17 8 6.6135 -4.4315 1.0426 18 7 8.2578 -4.0667 2.4868 19 6 9.1262 -3.7365 1.4786 20 1 8.7925 -3.7529 0.4515 21 6 10.4352 -3.3797 1.7782 22 7 10.8411 -3.3593 3.0279 23 14 11.6187 -2.9305 0.4045 24 1 10.9211 -3.0316 -0.9026 25 1 12.1009 -1.5399 0.6015 26 1 12.7747 -3.8624 0.4225 27 6 3.7109 -5.2633 3.7858 28 6 2.3422 -5.4343 3.1697 29 1 1.5678 -5.6202 3.9140 30 1 -0.3634 0.4512 0.9233 31 1 -0.3634 0.5739 -0.8524 32 1 -0.3633 -1.0252 -0.0708 33 1 3.0828 1.3432 -0.0709 34 1 1.5897 1.9163 -0.8524 35 1 1.7044 1.8723 0.9233 36 1 1.5612 -0.3873 2.0628 37 1 3.0798 -0.6611 1.1755 38 1 2.0658 -2.6213 0.0450 39 1 0.5472 -2.3475 0.9323 40 1 1.4468 -5.1994 0.2830 41 1 0.2469 -5.5225 1.6097 42 1 3.4870 -5.8414 0.3188 43 1 3.5310 -7.5617 0.7338 44 1 5.6333 -6.2465 1.2276 45 1 4.9699 -7.1838 2.5822 46 1 6.4213 -5.6335 3.8520 47 1 5.9268 -3.9287 3.9835 48 1 8.5573 -4.0516 3.4092 49 1 11.7550 -3.1106 3.2371 50 1 3.9383 -6.1472 4.3816 51 1 3.7194 -4.3820 4.4272 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001221787942.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:21 Heat of formation + Delta-G solvation = -13.215845 kcal Electronic energy + Delta-G solvation = -30888.645171 eV Core-core repulsion = 26824.714060 eV Total energy + Delta-G solvation = -4063.931111 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.89044 -38.70995 -38.09901 -37.10092 -35.80748 -33.75985 -32.04290 -31.49758 -31.11852 -29.52464 -28.34978 -27.72635 -25.82104 -25.13003 -24.01051 -23.36646 -21.86689 -21.27051 -19.75537 -19.11826 -17.90867 -17.79488 -17.05834 -16.37128 -15.92874 -15.71101 -15.60625 -14.98312 -14.89997 -14.82423 -14.51110 -14.44866 -14.09551 -13.89753 -13.53708 -13.48076 -13.10368 -12.76181 -12.73587 -12.51671 -12.32611 -12.27028 -11.92966 -11.83972 -11.76967 -11.59074 -11.44183 -11.38747 -11.28261 -11.04618 -10.93779 -10.90017 -10.34276 -10.30726 -10.27015 -10.15648 -9.40356 -9.34453 -8.52577 -8.48509 -8.28267 -7.88984 -7.71634 -6.34737 -3.75066 2.79617 2.98465 3.20839 3.30739 3.38173 3.83720 3.98714 4.02629 4.22634 4.34666 4.57274 4.77376 4.87570 4.92461 5.03096 5.06198 5.09742 5.22165 5.22778 5.27310 5.30818 5.32249 5.36809 5.39335 5.48126 5.49325 5.55523 5.61403 5.67216 5.70521 5.80611 5.87227 5.89161 5.93619 5.95894 6.00007 6.06288 6.14014 6.15529 6.37621 6.45813 6.56850 6.88065 6.90395 7.42836 7.54273 7.61953 7.93764 8.14386 8.47239 8.70039 9.25656 9.63032 10.15227 10.83353 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.008969 B = 0.003499 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3121.245388 B = 8000.780228 C =10211.709835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.549 5.549 3 C 0.026 3.974 4 C 0.071 3.929 5 C -0.128 4.128 6 C 0.548 3.452 7 O -0.534 6.534 8 N -0.630 5.630 9 C 0.101 3.899 10 C -0.112 4.112 11 H 0.086 0.914 12 C -0.090 4.090 13 C 0.053 3.947 14 N -0.496 5.496 15 C 0.049 3.951 16 C 0.448 3.552 17 O -0.576 6.576 18 N -0.567 5.567 19 C -0.295 4.295 20 H 0.103 0.897 21 C 0.021 3.979 22 N -0.903 5.903 23 Si 0.928 3.072 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.282 1.282 27 C 0.051 3.949 28 C 0.148 3.852 29 H 0.092 0.908 30 H 0.024 0.976 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.025 0.975 36 H 0.040 0.960 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.103 0.897 45 H 0.017 0.983 46 H 0.044 0.956 47 H 0.088 0.912 48 H 0.391 0.609 49 H 0.270 0.730 50 H 0.039 0.961 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.609 -3.016 -0.680 22.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.273 5.273 3 C -0.123 4.123 4 C -0.057 4.057 5 C -0.168 4.168 6 C 0.338 3.662 7 O -0.410 6.410 8 N -0.367 5.367 9 C -0.022 4.022 10 C -0.132 4.132 11 H 0.104 0.896 12 C -0.128 4.128 13 C -0.075 4.075 14 N -0.220 5.220 15 C -0.082 4.082 16 C 0.234 3.766 17 O -0.460 6.460 18 N -0.203 5.203 19 C -0.425 4.425 20 H 0.121 0.879 21 C -0.181 4.181 22 N -0.545 5.545 23 Si 0.755 3.245 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.078 4.078 28 C 0.045 3.955 29 H 0.109 0.891 30 H 0.042 0.958 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.043 0.957 36 H 0.058 0.942 37 H 0.106 0.894 38 H 0.118 0.882 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.090 0.910 43 H 0.083 0.917 44 H 0.121 0.879 45 H 0.035 0.965 46 H 0.062 0.938 47 H 0.107 0.893 48 H 0.224 0.776 49 H 0.080 0.920 50 H 0.057 0.943 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -22.284 -2.247 -1.684 22.460 hybrid contribution 0.705 0.003 1.265 1.448 sum -21.579 -2.244 -0.419 21.700 Atomic orbital electron populations 1.22441 0.87886 1.02125 1.00316 1.61941 1.07642 1.14138 1.43614 1.22368 1.01319 0.88340 1.00239 1.21838 1.01607 0.91469 0.90780 1.21519 1.01602 0.95351 0.98356 1.19990 0.79254 0.79807 0.87198 1.90686 1.40853 1.68352 1.41088 1.50227 1.55760 1.04940 1.25785 1.23503 0.96275 0.85663 0.96798 1.22615 0.97262 0.97185 0.96090 0.89593 1.20757 0.92189 1.01452 0.98432 1.21855 0.99113 0.89149 0.97396 1.61478 1.04964 1.34742 1.20794 1.21815 0.89320 1.00553 0.96546 1.19724 0.82955 0.84199 0.89736 1.90476 1.76853 1.57588 1.21092 1.41868 1.08724 1.59768 1.09988 1.19732 0.90703 1.41917 0.90126 0.87935 1.25245 0.97881 0.97680 0.97246 1.69625 1.18553 1.48977 1.17327 0.85821 0.79782 0.77962 0.80898 1.19247 1.20798 1.20845 1.21781 0.91240 1.01128 0.93666 1.22469 0.96344 0.84033 0.92664 0.89075 0.95771 0.91496 0.91339 0.90905 0.91422 0.95656 0.94182 0.89450 0.88232 0.89861 0.89938 0.90219 0.90982 0.91706 0.87920 0.96452 0.93784 0.89348 0.77558 0.92029 0.94305 0.89403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.32 60.06 0.56 0.75 16 2 N -0.55 -6.47 5.02 -251.26 -1.26 -7.73 16 3 C 0.03 0.27 9.57 60.07 0.57 0.84 16 4 C 0.07 0.96 4.25 -3.82 -0.02 0.94 16 5 C -0.13 -1.60 5.40 -27.88 -0.15 -1.75 16 6 C 0.55 8.44 7.98 -10.99 -0.09 8.35 16 7 O -0.53 -10.31 15.72 5.55 0.09 -10.22 16 8 N -0.63 -8.07 3.33 -170.89 -0.57 -8.64 16 9 C 0.10 0.89 8.05 -2.58 -0.02 0.87 16 10 C -0.11 -1.09 4.33 -90.63 -0.39 -1.48 16 11 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 12 C -0.09 -1.13 5.75 -28.10 -0.16 -1.30 16 13 C 0.05 0.85 5.04 -4.75 -0.02 0.83 16 14 N -0.50 -8.74 4.31 -238.50 -1.03 -9.77 16 15 C 0.05 0.95 5.44 -4.98 -0.03 0.92 16 16 C 0.45 11.03 7.41 -10.98 -0.08 10.95 16 17 O -0.58 -15.85 13.96 5.54 0.08 -15.77 16 18 N -0.57 -14.92 5.29 -10.96 -0.06 -14.98 16 19 C -0.30 -8.45 9.68 -14.93 -0.14 -8.59 16 20 H 0.10 3.07 7.16 -52.48 -0.38 2.70 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 22 N -0.90 -25.26 13.05 55.50 0.72 -24.54 16 23 Si 0.93 21.58 29.55 -169.99 -5.02 16.56 16 24 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 C 0.05 0.72 4.77 -4.78 -0.02 0.70 16 28 C 0.15 1.71 4.55 -67.55 -0.31 1.41 16 29 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 32 H 0.07 0.56 6.47 -51.93 -0.34 0.23 16 33 H 0.07 0.81 8.12 -51.93 -0.42 0.39 16 34 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 35 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.04 0.55 8.08 -51.93 -0.42 0.13 16 37 H 0.09 1.40 8.02 -51.93 -0.42 0.98 16 38 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.08 0.83 6.55 -51.93 -0.34 0.49 16 40 H 0.08 0.70 7.68 -51.93 -0.40 0.30 16 41 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 1.04 7.36 -51.93 -0.38 0.65 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.10 2.06 5.74 -51.93 -0.30 1.76 16 45 H 0.02 0.26 8.03 -51.93 -0.42 -0.16 16 46 H 0.04 0.77 8.12 -51.93 -0.42 0.35 16 47 H 0.09 1.69 7.98 -51.93 -0.41 1.28 16 48 H 0.39 9.95 7.90 -40.82 -0.32 9.62 16 49 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 50 H 0.04 0.48 8.04 -51.93 -0.42 0.07 16 51 H 0.09 1.39 7.45 -51.93 -0.39 1.01 16 LS Contribution 402.85 15.07 6.07 6.07 Total: -1.00 -34.65 402.85 -10.08 -44.73 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: -8.71 Total: 10.38 kcal Atomic # 6 Polarization: 14.31 SS G_CDS: -0.40 Total: 13.91 kcal Atomic # 7 Polarization: -63.46 SS G_CDS: -2.19 Total: -65.66 kcal Atomic # 8 Polarization: -26.16 SS G_CDS: 0.16 Total: -25.99 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.65 -10.08 -44.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221787942.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.517 kcal (2) G-P(sol) polarization free energy of solvation -34.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds