Wall clock time and date at job start Tue Mar 31 2020 20:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46903 * 110.99834 * 2 1 4 4 C 1.46900 * 111.00346 * 123.95608 * 2 1 3 5 5 C 1.52999 * 109.47224 * 66.04367 * 4 2 1 6 6 C 1.50697 * 109.47492 * 180.02562 * 5 4 2 7 7 O 1.21286 * 119.99448 * 359.97438 * 6 5 4 8 8 N 1.34771 * 120.00278 * 180.02562 * 6 5 4 9 9 C 1.47748 * 134.92480 * 359.97438 * 8 6 5 10 10 C 1.54561 * 85.84080 * 154.12210 * 9 8 6 11 11 H 1.09000 * 113.35963 * 139.07231 * 10 9 8 12 12 C 1.51679 * 111.76503 * 267.67607 * 10 9 8 13 13 C 1.51627 * 113.71212 * 125.34631 * 12 10 9 14 14 N 1.46484 * 111.12945 * 312.96624 * 13 12 10 15 15 C 1.46893 * 111.00579 * 189.65241 * 14 13 12 16 16 C 1.50706 * 109.47176 * 66.04463 * 15 14 13 17 17 O 1.21295 * 119.99584 * 0.02562 * 16 15 14 18 18 N 1.34774 * 120.00020 * 180.02562 * 16 15 14 19 19 C 1.37095 * 119.99737 * 180.02562 * 18 16 15 20 20 H 1.08004 * 120.00254 * 0.02562 * 19 18 16 21 21 C 1.38949 * 119.99943 * 179.97438 * 19 18 16 22 22 N 1.31413 * 120.00099 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00243 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.46883 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47233 * 120.00270 * 23 21 19 26 26 H 1.48501 * 109.47364 * 240.00343 * 23 21 19 27 27 C 1.46930 * 110.16375 * 66.28822 * 14 13 12 28 28 C 1.49186 * 134.95662 * 179.91681 * 8 6 5 29 29 H 1.09001 * 112.81390 * 92.98243 * 28 8 6 30 30 H 1.09003 * 109.47209 * 296.04208 * 1 2 3 31 31 H 1.08994 * 109.47804 * 56.04688 * 1 2 3 32 32 H 1.08998 * 109.47157 * 176.04826 * 1 2 3 33 33 H 1.09004 * 109.46803 * 183.95639 * 3 2 1 34 34 H 1.08999 * 109.46978 * 303.95281 * 3 2 1 35 35 H 1.08998 * 109.46772 * 63.95831 * 3 2 1 36 36 H 1.09001 * 109.46909 * 306.04656 * 4 2 1 37 37 H 1.08999 * 109.47264 * 186.04739 * 4 2 1 38 38 H 1.09004 * 109.47016 * 59.99538 * 5 4 2 39 39 H 1.09004 * 109.46895 * 300.00527 * 5 4 2 40 40 H 1.08994 * 113.81252 * 39.89041 * 9 8 6 41 41 H 1.09001 * 113.92367 * 268.35975 * 9 8 6 42 42 H 1.09000 * 108.63705 * 4.25065 * 12 10 9 43 43 H 1.09005 * 108.53087 * 246.36094 * 12 10 9 44 44 H 1.09004 * 109.14839 * 192.54861 * 13 12 10 45 45 H 1.08998 * 109.14982 * 73.39300 * 13 12 10 46 46 H 1.09001 * 109.46739 * 306.04871 * 15 14 13 47 47 H 1.09000 * 109.47767 * 186.05130 * 15 14 13 48 48 H 0.96994 * 119.99756 * 0.02562 * 18 16 15 49 49 H 0.96999 * 120.00288 * 179.97438 * 22 21 19 50 50 H 1.08993 * 109.43512 * 55.59550 * 27 14 13 51 51 H 1.09002 * 109.43742 * 175.47532 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.6315 -2.2426 0.9703 6 6 2.1711 -3.0284 2.1375 7 8 2.7866 -2.4630 3.0164 8 7 1.9705 -4.3594 2.2042 9 6 1.2925 -5.3565 1.3504 10 6 2.2614 -6.3853 1.9763 11 1 1.7865 -7.3371 2.2144 12 6 3.5188 -6.5521 1.1446 13 6 4.7999 -6.3310 1.9250 14 7 4.7229 -5.1107 2.7316 15 6 6.0332 -4.7746 3.3044 16 6 6.9879 -4.4122 2.1961 17 8 6.6135 -4.4315 1.0426 18 7 8.2578 -4.0667 2.4868 19 6 9.1262 -3.7365 1.4786 20 1 8.7925 -3.7529 0.4515 21 6 10.4352 -3.3797 1.7782 22 7 10.8411 -3.3593 3.0279 23 14 11.6187 -2.9305 0.4045 24 1 10.9211 -3.0316 -0.9026 25 1 12.1009 -1.5399 0.6015 26 1 12.7747 -3.8624 0.4225 27 6 3.7109 -5.2633 3.7858 28 6 2.3422 -5.4343 3.1697 29 1 1.5678 -5.6202 3.9140 30 1 -0.3634 0.4512 0.9233 31 1 -0.3634 0.5739 -0.8524 32 1 -0.3633 -1.0252 -0.0708 33 1 3.0828 1.3432 -0.0709 34 1 1.5897 1.9163 -0.8524 35 1 1.7044 1.8723 0.9233 36 1 1.5612 -0.3873 2.0628 37 1 3.0798 -0.6611 1.1755 38 1 2.0658 -2.6213 0.0450 39 1 0.5472 -2.3475 0.9323 40 1 1.4468 -5.1994 0.2830 41 1 0.2469 -5.5225 1.6097 42 1 3.4870 -5.8414 0.3188 43 1 3.5310 -7.5617 0.7338 44 1 5.6333 -6.2465 1.2276 45 1 4.9699 -7.1838 2.5822 46 1 6.4213 -5.6335 3.8520 47 1 5.9268 -3.9287 3.9835 48 1 8.5573 -4.0516 3.4092 49 1 11.7550 -3.1106 3.2371 50 1 3.9383 -6.1472 4.3816 51 1 3.7194 -4.3820 4.4272 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001221787942.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:20 Heat of formation + Delta-G solvation = -40.804685 kcal Electronic energy + Delta-G solvation = -30889.841513 eV Core-core repulsion = 26824.714060 eV Total energy + Delta-G solvation = -4065.127453 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.88898 -40.28296 -39.49855 -38.13232 -37.19192 -35.84692 -33.39625 -33.01974 -32.51885 -30.68574 -29.59059 -28.50931 -27.41216 -26.12959 -25.67439 -24.41025 -22.94771 -22.24453 -21.10374 -20.74268 -19.90541 -18.93888 -18.12764 -17.72950 -17.24145 -16.89273 -16.75371 -16.46974 -16.34492 -15.97243 -15.89002 -15.67408 -15.45363 -15.32835 -14.97797 -14.66136 -14.39485 -14.05080 -13.85143 -13.66639 -13.55183 -13.32053 -13.18376 -13.13431 -13.00212 -12.77311 -12.75183 -12.65439 -12.45731 -12.42765 -12.29521 -12.13398 -12.02188 -11.93906 -11.59313 -11.35339 -11.30557 -10.46233 -10.27231 -10.01335 -9.45084 -9.39983 -9.10543 -8.47966 -5.96947 1.34501 1.38754 1.53814 1.84233 1.91363 2.03304 2.26774 2.75514 2.94741 3.18258 3.33221 3.43167 3.68121 3.83310 3.92133 4.01461 4.10855 4.13309 4.23435 4.25779 4.34729 4.36212 4.42921 4.47056 4.50120 4.54450 4.57723 4.60860 4.62901 4.66659 4.68964 4.77116 4.86599 4.89629 4.92263 4.95396 4.99387 5.02756 5.10353 5.19865 5.31780 5.38692 5.48290 5.90382 5.93431 6.05803 6.12633 6.31161 6.58877 6.95046 7.11116 7.37478 7.53994 8.10023 8.70084 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.008969 B = 0.003499 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3121.245388 B = 8000.780228 C =10211.709835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.561 5.561 3 C 0.024 3.976 4 C 0.079 3.921 5 C -0.116 4.116 6 C 0.534 3.466 7 O -0.589 6.589 8 N -0.638 5.638 9 C 0.107 3.893 10 C -0.102 4.102 11 H 0.132 0.868 12 C -0.087 4.087 13 C 0.054 3.946 14 N -0.518 5.518 15 C 0.062 3.938 16 C 0.445 3.555 17 O -0.609 6.609 18 N -0.577 5.577 19 C -0.331 4.331 20 H 0.078 0.922 21 C -0.015 4.015 22 N -0.923 5.923 23 Si 0.995 3.005 24 H -0.273 1.273 25 H -0.272 1.272 26 H -0.267 1.267 27 C 0.050 3.950 28 C 0.139 3.861 29 H 0.128 0.872 30 H 0.026 0.974 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.056 0.944 34 H 0.088 0.912 35 H 0.027 0.973 36 H 0.031 0.969 37 H 0.047 0.953 38 H 0.093 0.907 39 H 0.117 0.883 40 H 0.084 0.916 41 H 0.122 0.878 42 H 0.045 0.955 43 H 0.091 0.909 44 H 0.054 0.946 45 H 0.035 0.965 46 H 0.067 0.933 47 H 0.087 0.913 48 H 0.394 0.606 49 H 0.277 0.723 50 H 0.063 0.937 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.196 -4.703 -0.930 25.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.285 5.285 3 C -0.124 4.124 4 C -0.049 4.049 5 C -0.156 4.156 6 C 0.324 3.676 7 O -0.470 6.470 8 N -0.374 5.374 9 C -0.014 4.014 10 C -0.121 4.121 11 H 0.150 0.850 12 C -0.125 4.125 13 C -0.074 4.074 14 N -0.243 5.243 15 C -0.070 4.070 16 C 0.232 3.768 17 O -0.495 6.495 18 N -0.214 5.214 19 C -0.460 4.460 20 H 0.096 0.904 21 C -0.214 4.214 22 N -0.564 5.564 23 Si 0.818 3.182 24 H -0.198 1.198 25 H -0.197 1.197 26 H -0.192 1.192 27 C -0.078 4.078 28 C 0.037 3.963 29 H 0.145 0.855 30 H 0.045 0.955 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.075 0.925 34 H 0.107 0.893 35 H 0.046 0.954 36 H 0.050 0.950 37 H 0.065 0.935 38 H 0.112 0.888 39 H 0.135 0.865 40 H 0.102 0.898 41 H 0.140 0.860 42 H 0.064 0.936 43 H 0.109 0.891 44 H 0.072 0.928 45 H 0.053 0.947 46 H 0.084 0.916 47 H 0.106 0.894 48 H 0.227 0.773 49 H 0.087 0.913 50 H 0.081 0.919 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -24.907 -3.983 -1.932 25.297 hybrid contribution 1.494 0.491 1.348 2.072 sum -23.413 -3.492 -0.583 23.679 Atomic orbital electron populations 1.22535 0.85796 1.03311 1.01138 1.61972 1.09572 1.14482 1.42474 1.22408 1.00540 0.88209 1.01279 1.21628 0.99178 0.92851 0.91271 1.21438 1.03363 0.93963 0.96852 1.20480 0.78905 0.80964 0.87243 1.90653 1.43396 1.69812 1.43095 1.50471 1.55323 1.04592 1.27002 1.23807 0.97946 0.83093 0.96550 1.22555 0.95968 0.99124 0.94411 0.85033 1.20741 0.91922 1.02179 0.97628 1.21784 0.99682 0.89086 0.96845 1.61443 1.04344 1.36075 1.22391 1.21624 0.89615 1.01345 0.94400 1.20660 0.82967 0.82494 0.90640 1.90447 1.77453 1.58541 1.23073 1.41945 1.09334 1.60471 1.09655 1.19687 0.92131 1.44437 0.89757 0.90387 1.26077 0.98790 0.96751 0.99826 1.69692 1.19318 1.48670 1.18720 0.84854 0.77565 0.78254 0.77537 1.19759 1.19685 1.19247 1.21826 0.91909 1.01072 0.92948 1.22829 0.95429 0.84105 0.93964 0.85460 0.95544 0.89880 0.90117 0.92507 0.89303 0.95431 0.95030 0.93453 0.88818 0.86535 0.89774 0.86008 0.93641 0.89091 0.92751 0.94685 0.91569 0.89438 0.77285 0.91322 0.91914 0.91746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.32 127.69 1.19 1.52 16 2 N -0.56 -13.17 5.02 -948.85 -4.76 -17.93 16 3 C 0.02 0.51 9.57 127.69 1.22 1.73 16 4 C 0.08 2.24 4.25 86.30 0.37 2.61 16 5 C -0.12 -2.88 5.40 29.85 0.16 -2.72 16 6 C 0.53 16.57 7.98 87.66 0.70 17.27 16 7 O -0.59 -23.93 15.72 -3.05 -0.05 -23.98 16 8 N -0.64 -15.16 3.33 -812.97 -2.71 -17.87 16 9 C 0.11 1.45 8.05 86.65 0.70 2.15 16 10 C -0.10 -1.54 4.33 -10.74 -0.05 -1.59 16 11 H 0.13 0.97 8.14 -2.39 -0.02 0.95 16 12 C -0.09 -2.01 5.75 29.71 0.17 -1.84 16 13 C 0.05 1.73 5.04 85.93 0.43 2.17 16 14 N -0.52 -18.50 4.31 -908.47 -3.92 -22.41 16 15 C 0.06 2.48 5.44 85.56 0.47 2.94 16 16 C 0.45 23.12 7.41 87.66 0.65 23.77 16 17 O -0.61 -35.67 13.96 -3.08 -0.04 -35.71 16 18 N -0.58 -31.90 5.29 -306.98 -1.62 -33.52 16 19 C -0.33 -19.79 9.68 84.04 0.81 -18.98 16 20 H 0.08 4.96 7.16 -2.91 -0.02 4.94 16 21 C -0.02 -0.85 5.50 84.93 0.47 -0.38 16 22 N -0.92 -52.16 13.05 21.66 0.28 -51.87 16 23 Si 0.99 44.79 29.55 68.60 2.03 46.82 16 24 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 25 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 26 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 27 C 0.05 1.38 4.77 85.67 0.41 1.79 16 28 C 0.14 2.79 4.55 43.75 0.20 2.99 16 29 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.08 1.11 8.12 -2.39 -0.02 1.09 16 32 H 0.08 1.11 6.47 -2.39 -0.02 1.10 16 33 H 0.06 1.37 8.12 -2.39 -0.02 1.35 16 34 H 0.09 1.50 8.12 -2.39 -0.02 1.48 16 35 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.03 0.92 8.08 -2.39 -0.02 0.90 16 37 H 0.05 1.68 8.02 -2.39 -0.02 1.66 16 38 H 0.09 2.43 8.14 -2.38 -0.02 2.41 16 39 H 0.12 2.05 6.55 -2.38 -0.02 2.03 16 40 H 0.08 1.16 7.68 -2.39 -0.02 1.14 16 41 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.04 1.29 7.36 -2.39 -0.02 1.27 16 43 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 44 H 0.05 2.29 5.74 -2.38 -0.01 2.27 16 45 H 0.04 0.99 8.03 -2.39 -0.02 0.97 16 46 H 0.07 2.34 8.12 -2.39 -0.02 2.32 16 47 H 0.09 3.51 7.98 -2.39 -0.02 3.49 16 48 H 0.39 20.92 7.90 -92.71 -0.73 20.19 16 49 H 0.28 14.58 8.31 -92.71 -0.77 13.81 16 50 H 0.06 1.40 8.04 -2.39 -0.02 1.38 16 51 H 0.06 2.07 7.45 -2.39 -0.02 2.05 16 Total: -1.00 -81.94 402.85 -2.70 -84.64 By element: Atomic # 1 Polarization: 38.23 SS G_CDS: 0.19 Total: 38.42 kcal Atomic # 6 Polarization: 25.53 SS G_CDS: 7.90 Total: 33.43 kcal Atomic # 7 Polarization: -130.89 SS G_CDS: -12.73 Total: -143.62 kcal Atomic # 8 Polarization: -59.60 SS G_CDS: -0.09 Total: -59.69 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -81.94 -2.70 -84.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221787942.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.838 kcal (2) G-P(sol) polarization free energy of solvation -81.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds