Wall clock time and date at job start Tue Mar 31 2020 20:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35995 * 117.00341 * 2 1 4 4 C 1.38566 * 120.07009 * 359.71714 * 3 2 1 5 5 C 1.38247 * 119.99314 * 179.79469 * 4 3 2 6 6 C 1.38248 * 120.14722 * 0.46908 * 5 4 3 7 7 C 1.50700 * 119.92593 * 179.76833 * 6 5 4 8 8 C 1.52999 * 109.47208 * 270.02112 * 7 6 5 9 9 O 1.42900 * 109.47462 * 179.97438 * 8 7 6 10 10 C 1.42898 * 114.00209 * 179.97438 * 9 8 7 11 11 H 1.09001 * 109.46693 * 30.00424 * 10 9 8 12 12 C 1.50700 * 109.47191 * 270.00160 * 10 9 8 13 13 H 1.07998 * 120.00254 * 125.22739 * 12 10 9 14 14 C 1.37877 * 119.99676 * 305.22328 * 12 10 9 15 15 N 1.31511 * 120.00269 * 6.68245 * 14 12 10 16 16 Si 1.86798 * 119.99706 * 186.68845 * 14 12 10 17 17 H 1.48496 * 109.47446 * 84.98640 * 16 14 12 18 18 H 1.48501 * 109.47183 * 204.98501 * 16 14 12 19 19 H 1.48504 * 109.47214 * 324.98438 * 16 14 12 20 20 C 1.53002 * 109.46968 * 149.99655 * 10 9 8 21 21 N 1.46898 * 109.47244 * 294.06137 * 20 10 9 22 22 C 1.46897 * 109.47185 * 63.91185 * 21 20 10 23 23 C 1.46906 * 109.46920 * 183.90847 * 21 20 10 24 24 C 1.46897 * 109.47103 * 303.90505 * 21 20 10 25 25 C 1.38240 * 120.14825 * 359.78647 * 6 5 4 26 26 C 1.38558 * 120.00132 * 359.97438 * 25 6 5 27 27 O 1.35995 * 120.07667 * 180.02562 * 26 25 6 28 28 C 1.42899 * 117.00067 * 359.97438 * 27 26 25 29 29 H 1.09002 * 109.47155 * 60.00030 * 1 2 3 30 30 H 1.08994 * 109.47509 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47041 * 300.00524 * 1 2 3 32 32 H 1.07993 * 120.00057 * 0.03007 * 4 3 2 33 33 H 1.08001 * 119.91963 * 180.21307 * 5 4 3 34 34 H 1.08999 * 109.47172 * 30.01723 * 7 6 5 35 35 H 1.08999 * 109.47258 * 150.01810 * 7 6 5 36 36 H 1.08999 * 109.46736 * 299.99878 * 8 7 6 37 37 H 1.08999 * 109.47258 * 59.99697 * 8 7 6 38 38 H 0.97002 * 119.99827 * 180.02562 * 15 14 12 39 39 H 1.09003 * 109.46968 * 54.06376 * 20 10 9 40 40 H 1.08999 * 109.46605 * 174.05702 * 20 10 9 41 41 H 1.08998 * 109.47581 * 51.67487 * 22 21 20 42 42 H 1.09004 * 109.46895 * 171.67677 * 22 21 20 43 43 H 1.09003 * 109.47161 * 291.67225 * 22 21 20 44 44 H 1.09006 * 109.46716 * 59.99726 * 23 21 20 45 45 H 1.08997 * 109.46803 * 179.97438 * 23 21 20 46 46 H 1.08999 * 109.47085 * 300.00559 * 23 21 20 47 47 H 1.09004 * 109.47008 * 60.00370 * 24 21 20 48 48 H 1.09001 * 109.47245 * 179.97438 * 24 21 20 49 49 H 1.08996 * 109.47451 * 300.00210 * 24 21 20 50 50 H 1.08003 * 120.00395 * 180.02562 * 25 6 5 51 51 H 1.08995 * 109.47550 * 179.97438 * 28 27 26 52 52 H 1.09001 * 109.47040 * 300.00304 * 28 27 26 53 53 H 1.09004 * 109.47140 * 59.99918 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2933 2.3748 -0.0059 5 6 1.9226 3.6057 -0.0016 6 6 3.3031 3.6797 -0.0012 7 6 3.9839 5.0241 -0.0018 8 6 4.2144 5.4785 -1.4445 9 8 4.8594 6.7536 -1.4451 10 6 5.1225 7.2713 -2.7508 11 1 4.3640 6.9091 -3.4447 12 6 6.4828 6.8119 -3.2086 13 1 6.5885 6.2897 -4.1481 14 6 7.5923 7.0583 -2.4282 15 7 7.4501 7.5751 -1.2273 16 14 9.2978 6.6583 -3.0768 17 1 9.7959 7.7941 -3.8935 18 1 10.2198 6.4274 -1.9357 19 1 9.2337 5.4352 -3.9167 20 6 5.0876 8.8004 -2.7096 21 7 3.7237 9.2510 -2.4017 22 6 3.3494 8.7950 -1.0564 23 6 3.6692 10.7181 -2.4543 24 6 2.7889 8.6906 -3.3866 25 6 4.0604 2.5231 -0.0006 26 6 3.4360 1.2862 0.0001 27 8 4.1795 0.1475 0.0012 28 6 5.6003 0.3003 0.0010 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8900 32 1 0.2148 2.3196 -0.0100 33 1 1.3344 4.5114 -0.0028 34 1 3.3541 5.7506 0.5117 35 1 4.9420 4.9464 0.5121 36 1 4.8442 4.7520 -1.9579 37 1 3.2563 5.5562 -1.9584 38 1 8.2308 7.7488 -0.6784 39 1 5.7711 9.1588 -1.9400 40 1 5.3913 9.1968 -3.6785 41 1 4.1227 9.0863 -0.3457 42 1 2.4016 9.2504 -0.7691 43 1 3.2459 7.7099 -1.0562 44 1 3.9470 11.0564 -3.4526 45 1 2.6571 11.0523 -2.2263 46 1 4.3629 11.1339 -1.7237 47 1 2.8293 7.6020 -3.3476 48 1 1.7768 9.0246 -3.1579 49 1 3.0666 9.0290 -4.3848 50 1 5.1387 2.5837 0.0001 51 1 6.0715 -0.6825 0.0024 52 1 5.9065 0.8493 -0.8896 53 1 5.9066 0.8510 0.8904 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222286644.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:21 Heat of formation + Delta-G solvation = 11.865151 kcal Electronic energy + Delta-G solvation = -31042.510823 eV Core-core repulsion = 26999.144726 eV Total energy + Delta-G solvation = -4043.366097 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.216 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.24628 -41.40826 -39.25108 -38.72858 -37.79546 -34.64787 -33.24965 -31.44945 -31.18670 -30.39660 -30.16893 -29.46176 -28.04244 -27.69061 -27.41866 -24.91870 -23.98318 -23.02248 -22.58531 -21.77171 -19.26292 -18.97600 -18.64228 -18.19824 -18.00191 -17.76786 -17.55519 -16.90703 -16.77222 -16.09456 -16.03735 -15.74996 -15.59724 -15.33743 -15.24991 -14.97827 -14.74903 -14.58608 -14.35147 -14.09023 -14.07520 -13.92641 -13.69564 -13.58898 -13.49976 -13.34487 -13.01798 -12.84506 -12.71517 -12.41109 -12.24834 -12.12473 -12.04294 -11.98962 -11.87288 -11.78659 -11.54567 -11.18769 -10.97438 -10.09001 -9.66718 -9.54203 -8.59027 -7.60057 -5.82293 0.35539 0.42173 0.55676 2.13837 2.28628 2.31901 2.32888 2.37386 2.40775 2.43615 2.48143 2.78303 3.07541 3.13792 3.16902 3.24739 3.43805 3.56832 3.68081 3.72198 3.76413 3.76947 3.87026 3.89772 4.00222 4.10989 4.19442 4.19858 4.29939 4.30125 4.33604 4.36694 4.38360 4.44016 4.49779 4.54564 4.59093 4.64858 4.70276 4.76853 4.79029 4.90517 5.18101 5.28002 5.30431 5.39114 5.39789 5.75503 5.85131 6.22569 6.30684 6.37347 6.75474 6.79549 7.34550 8.00026 9.40790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.307 6.307 3 C 0.094 3.906 4 C -0.172 4.172 5 C -0.116 4.116 6 C -0.075 4.075 7 C -0.072 4.072 8 C 0.075 3.925 9 O -0.367 6.367 10 C 0.202 3.798 11 H 0.030 0.970 12 C -0.572 4.572 13 H 0.071 0.929 14 C 0.093 3.907 15 N -0.847 5.847 16 Si 0.892 3.108 17 H -0.273 1.273 18 H -0.279 1.279 19 H -0.269 1.269 20 C 0.000 4.000 21 N -0.270 5.270 22 C -0.041 4.041 23 C -0.042 4.042 24 C -0.044 4.044 25 C -0.164 4.164 26 C 0.103 3.897 27 O -0.307 6.307 28 C 0.025 3.975 29 H 0.054 0.946 30 H 0.100 0.900 31 H 0.054 0.946 32 H 0.134 0.866 33 H 0.124 0.876 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.053 0.947 37 H 0.027 0.973 38 H 0.273 0.727 39 H 0.143 0.857 40 H 0.116 0.884 41 H 0.119 0.881 42 H 0.093 0.907 43 H 0.138 0.862 44 H 0.112 0.888 45 H 0.108 0.892 46 H 0.115 0.885 47 H 0.119 0.881 48 H 0.108 0.892 49 H 0.113 0.887 50 H 0.138 0.862 51 H 0.101 0.899 52 H 0.057 0.943 53 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.021 10.104 -1.461 17.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.221 6.221 3 C 0.049 3.951 4 C -0.191 4.191 5 C -0.134 4.134 6 C -0.076 4.076 7 C -0.109 4.109 8 C -0.002 4.002 9 O -0.287 6.287 10 C 0.145 3.855 11 H 0.048 0.952 12 C -0.609 4.609 13 H 0.089 0.911 14 C -0.118 4.118 15 N -0.480 5.480 16 Si 0.718 3.282 17 H -0.199 1.199 18 H -0.204 1.204 19 H -0.193 1.193 20 C -0.119 4.119 21 N 0.071 4.929 22 C -0.182 4.182 23 C -0.184 4.184 24 C -0.186 4.186 25 C -0.183 4.183 26 C 0.057 3.943 27 O -0.221 6.221 28 C -0.070 4.070 29 H 0.073 0.927 30 H 0.119 0.881 31 H 0.073 0.927 32 H 0.152 0.848 33 H 0.142 0.858 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.072 0.928 37 H 0.045 0.955 38 H 0.082 0.918 39 H 0.161 0.839 40 H 0.134 0.866 41 H 0.137 0.863 42 H 0.112 0.888 43 H 0.155 0.845 44 H 0.130 0.870 45 H 0.126 0.874 46 H 0.134 0.866 47 H 0.137 0.863 48 H 0.126 0.874 49 H 0.132 0.868 50 H 0.155 0.845 51 H 0.119 0.881 52 H 0.076 0.924 53 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.839 9.877 -1.111 17.039 hybrid contribution 0.998 -0.035 -0.482 1.109 sum -12.841 9.843 -1.593 16.258 Atomic orbital electron populations 1.23070 0.78539 1.04115 1.01120 1.86188 1.21005 1.25903 1.88995 1.18285 0.89189 0.85319 1.02355 1.21029 0.99865 0.91496 1.06668 1.20685 0.93698 0.96894 1.02116 1.19466 0.93139 0.94482 1.00491 1.20413 1.01229 0.92276 0.97031 1.22166 0.94679 0.87954 0.95449 1.88016 1.79011 1.32067 1.29564 1.19886 0.97202 0.85734 0.82671 0.95235 1.21206 0.90475 1.41475 1.07758 0.91135 1.24988 0.99946 0.92960 0.93918 1.69879 1.31368 1.39384 1.07346 0.86555 0.82601 0.79725 0.79269 1.19870 1.20448 1.19333 1.24895 0.78085 1.01964 1.06920 1.46383 1.17596 1.13731 1.15180 1.24363 1.04366 1.07869 0.81607 1.24004 1.07633 0.78350 1.08376 1.24031 0.94886 1.05142 0.94573 1.21047 1.00684 0.90510 1.06068 1.18280 0.88295 0.86226 1.01458 1.86174 1.18904 1.28155 1.88841 1.23115 0.78290 1.04071 1.01558 0.92750 0.88140 0.92729 0.84833 0.85796 0.90971 0.89805 0.92819 0.95498 0.91751 0.83933 0.86568 0.86284 0.88803 0.84452 0.86982 0.87352 0.86644 0.86259 0.87371 0.86822 0.84460 0.88060 0.92404 0.92547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 9.81 101.05 0.99 0.99 16 2 O -0.31 -1.35 10.28 -34.23 -0.35 -1.70 16 3 C 0.09 0.39 6.70 -39.12 -0.26 0.13 16 4 C -0.17 -0.25 9.04 -39.46 -0.36 -0.60 16 5 C -0.12 -0.06 9.69 -39.57 -0.38 -0.44 16 6 C -0.08 -0.12 5.13 -104.62 -0.54 -0.66 16 7 C -0.07 -0.05 5.71 -27.88 -0.16 -0.21 16 8 C 0.07 0.08 5.02 37.16 0.19 0.27 16 9 O -0.37 -0.57 5.92 -35.23 -0.21 -0.78 16 10 C 0.20 0.20 1.85 -27.88 -0.05 0.15 16 11 H 0.03 -0.03 5.54 -51.93 -0.29 -0.32 16 12 C -0.57 -4.13 8.86 -34.44 -0.31 -4.43 16 13 H 0.07 0.62 7.82 -52.49 -0.41 0.21 16 14 C 0.09 0.84 5.23 -17.82 -0.09 0.74 16 15 N -0.85 -7.73 11.24 55.43 0.62 -7.11 16 16 Si 0.89 8.27 29.54 -169.99 -5.02 3.25 16 17 H -0.27 -2.59 7.11 56.52 0.40 -2.19 16 18 H -0.28 -2.94 7.11 56.52 0.40 -2.54 16 19 H -0.27 -2.76 7.11 56.52 0.40 -2.35 16 20 C 0.00 0.00 3.61 -3.82 -0.01 -0.01 16 21 N -0.27 2.62 0.05 -395.62 -0.02 2.60 16 22 C -0.04 0.36 7.15 60.06 0.43 0.79 16 23 C -0.04 0.51 8.00 60.07 0.48 0.99 16 24 C -0.04 0.49 7.56 60.06 0.45 0.95 16 25 C -0.16 -0.52 8.69 -39.46 -0.34 -0.87 16 26 C 0.10 0.49 6.70 -39.12 -0.26 0.22 16 27 O -0.31 -1.62 10.28 -34.23 -0.35 -1.97 16 28 C 0.02 0.04 9.81 101.05 0.99 1.03 16 29 H 0.05 -0.08 7.65 -51.93 -0.40 -0.48 16 30 H 0.10 -0.16 8.14 -51.93 -0.42 -0.58 16 31 H 0.05 -0.07 7.68 -51.92 -0.40 -0.47 16 32 H 0.13 -0.13 6.30 -52.49 -0.33 -0.46 16 33 H 0.12 -0.28 8.06 -52.49 -0.42 -0.70 16 34 H 0.07 -0.09 8.08 -51.93 -0.42 -0.51 16 35 H 0.08 0.23 8.08 -51.93 -0.42 -0.19 16 36 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.03 -0.04 8.08 -51.93 -0.42 -0.46 16 38 H 0.27 2.70 8.31 -40.82 -0.34 2.36 16 39 H 0.14 -0.12 6.78 -51.93 -0.35 -0.47 16 40 H 0.12 -0.54 8.10 -51.93 -0.42 -0.96 16 41 H 0.12 -0.83 7.97 -51.93 -0.41 -1.24 16 42 H 0.09 -1.10 8.03 -51.93 -0.42 -1.51 16 43 H 0.14 -0.92 4.92 -51.93 -0.26 -1.18 16 44 H 0.11 -1.43 8.12 -51.93 -0.42 -1.85 16 45 H 0.11 -1.52 8.08 -51.93 -0.42 -1.94 16 46 H 0.11 -1.33 8.14 -51.93 -0.42 -1.76 16 47 H 0.12 -1.11 5.89 -51.93 -0.31 -1.42 16 48 H 0.11 -1.45 8.14 -51.93 -0.42 -1.87 16 49 H 0.11 -1.34 8.14 -51.93 -0.42 -1.76 16 50 H 0.14 0.34 6.30 -52.48 -0.33 0.01 16 51 H 0.10 0.00 8.14 -51.93 -0.42 -0.42 16 52 H 0.06 0.07 7.66 -51.93 -0.40 -0.33 16 53 H 0.06 0.05 7.66 -51.93 -0.40 -0.35 16 LS Contribution 411.18 15.07 6.20 6.20 Total: 0.00 -18.75 411.18 -7.68 -26.43 By element: Atomic # 1 Polarization: -16.63 SS G_CDS: -9.31 Total: -25.94 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: 0.77 Total: -0.97 kcal Atomic # 7 Polarization: -5.11 SS G_CDS: 0.60 Total: -4.51 kcal Atomic # 8 Polarization: -3.54 SS G_CDS: -0.91 Total: -4.45 kcal Atomic # 14 Polarization: 8.27 SS G_CDS: -5.02 Total: 3.25 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -18.75 -7.68 -26.43 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222286644.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.291 kcal (2) G-P(sol) polarization free energy of solvation -18.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds