Wall clock time and date at job start Tue Mar 31 2020 20:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35995 * 117.00341 * 2 1 4 4 C 1.38566 * 120.07009 * 359.71714 * 3 2 1 5 5 C 1.38247 * 119.99314 * 179.79469 * 4 3 2 6 6 C 1.38248 * 120.14722 * 0.46908 * 5 4 3 7 7 C 1.50700 * 119.92593 * 179.76833 * 6 5 4 8 8 C 1.52999 * 109.47208 * 270.02112 * 7 6 5 9 9 O 1.42900 * 109.47462 * 179.97438 * 8 7 6 10 10 C 1.42898 * 114.00209 * 179.97438 * 9 8 7 11 11 H 1.09001 * 109.46693 * 30.00424 * 10 9 8 12 12 C 1.50700 * 109.47191 * 270.00160 * 10 9 8 13 13 H 1.07998 * 120.00254 * 125.22739 * 12 10 9 14 14 C 1.37877 * 119.99676 * 305.22328 * 12 10 9 15 15 N 1.31511 * 120.00269 * 6.68245 * 14 12 10 16 16 Si 1.86798 * 119.99706 * 186.68845 * 14 12 10 17 17 H 1.48496 * 109.47446 * 84.98640 * 16 14 12 18 18 H 1.48501 * 109.47183 * 204.98501 * 16 14 12 19 19 H 1.48504 * 109.47214 * 324.98438 * 16 14 12 20 20 C 1.53002 * 109.46968 * 149.99655 * 10 9 8 21 21 N 1.46898 * 109.47244 * 294.06137 * 20 10 9 22 22 C 1.46897 * 109.47185 * 63.91185 * 21 20 10 23 23 C 1.46906 * 109.46920 * 183.90847 * 21 20 10 24 24 C 1.46897 * 109.47103 * 303.90505 * 21 20 10 25 25 C 1.38240 * 120.14825 * 359.78647 * 6 5 4 26 26 C 1.38558 * 120.00132 * 359.97438 * 25 6 5 27 27 O 1.35995 * 120.07667 * 180.02562 * 26 25 6 28 28 C 1.42899 * 117.00067 * 359.97438 * 27 26 25 29 29 H 1.09002 * 109.47155 * 60.00030 * 1 2 3 30 30 H 1.08994 * 109.47509 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47041 * 300.00524 * 1 2 3 32 32 H 1.07993 * 120.00057 * 0.03007 * 4 3 2 33 33 H 1.08001 * 119.91963 * 180.21307 * 5 4 3 34 34 H 1.08999 * 109.47172 * 30.01723 * 7 6 5 35 35 H 1.08999 * 109.47258 * 150.01810 * 7 6 5 36 36 H 1.08999 * 109.46736 * 299.99878 * 8 7 6 37 37 H 1.08999 * 109.47258 * 59.99697 * 8 7 6 38 38 H 0.97002 * 119.99827 * 180.02562 * 15 14 12 39 39 H 1.09003 * 109.46968 * 54.06376 * 20 10 9 40 40 H 1.08999 * 109.46605 * 174.05702 * 20 10 9 41 41 H 1.08998 * 109.47581 * 51.67487 * 22 21 20 42 42 H 1.09004 * 109.46895 * 171.67677 * 22 21 20 43 43 H 1.09003 * 109.47161 * 291.67225 * 22 21 20 44 44 H 1.09006 * 109.46716 * 59.99726 * 23 21 20 45 45 H 1.08997 * 109.46803 * 179.97438 * 23 21 20 46 46 H 1.08999 * 109.47085 * 300.00559 * 23 21 20 47 47 H 1.09004 * 109.47008 * 60.00370 * 24 21 20 48 48 H 1.09001 * 109.47245 * 179.97438 * 24 21 20 49 49 H 1.08996 * 109.47451 * 300.00210 * 24 21 20 50 50 H 1.08003 * 120.00395 * 180.02562 * 25 6 5 51 51 H 1.08995 * 109.47550 * 179.97438 * 28 27 26 52 52 H 1.09001 * 109.47040 * 300.00304 * 28 27 26 53 53 H 1.09004 * 109.47140 * 59.99918 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2933 2.3748 -0.0059 5 6 1.9226 3.6057 -0.0016 6 6 3.3031 3.6797 -0.0012 7 6 3.9839 5.0241 -0.0018 8 6 4.2144 5.4785 -1.4445 9 8 4.8594 6.7536 -1.4451 10 6 5.1225 7.2713 -2.7508 11 1 4.3640 6.9091 -3.4447 12 6 6.4828 6.8119 -3.2086 13 1 6.5885 6.2897 -4.1481 14 6 7.5923 7.0583 -2.4282 15 7 7.4501 7.5751 -1.2273 16 14 9.2978 6.6583 -3.0768 17 1 9.7959 7.7941 -3.8935 18 1 10.2198 6.4274 -1.9357 19 1 9.2337 5.4352 -3.9167 20 6 5.0876 8.8004 -2.7096 21 7 3.7237 9.2510 -2.4017 22 6 3.3494 8.7950 -1.0564 23 6 3.6692 10.7181 -2.4543 24 6 2.7889 8.6906 -3.3866 25 6 4.0604 2.5231 -0.0006 26 6 3.4360 1.2862 0.0001 27 8 4.1795 0.1475 0.0012 28 6 5.6003 0.3003 0.0010 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8900 32 1 0.2148 2.3196 -0.0100 33 1 1.3344 4.5114 -0.0028 34 1 3.3541 5.7506 0.5117 35 1 4.9420 4.9464 0.5121 36 1 4.8442 4.7520 -1.9579 37 1 3.2563 5.5562 -1.9584 38 1 8.2308 7.7488 -0.6784 39 1 5.7711 9.1588 -1.9400 40 1 5.3913 9.1968 -3.6785 41 1 4.1227 9.0863 -0.3457 42 1 2.4016 9.2504 -0.7691 43 1 3.2459 7.7099 -1.0562 44 1 3.9470 11.0564 -3.4526 45 1 2.6571 11.0523 -2.2263 46 1 4.3629 11.1339 -1.7237 47 1 2.8293 7.6020 -3.3476 48 1 1.7768 9.0246 -3.1579 49 1 3.0666 9.0290 -4.3848 50 1 5.1387 2.5837 0.0001 51 1 6.0715 -0.6825 0.0024 52 1 5.9065 0.8493 -0.8896 53 1 5.9066 0.8510 0.8904 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222286644.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:20 Heat of formation + Delta-G solvation = 7.338556 kcal Electronic energy + Delta-G solvation = -31042.707110 eV Core-core repulsion = 26999.144726 eV Total energy + Delta-G solvation = -4043.562385 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.216 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -42.58849 -41.56103 -39.43566 -38.81992 -37.90688 -35.03889 -33.47658 -31.42506 -31.31670 -29.60557 -29.45660 -29.31702 -28.12951 -27.72103 -27.58017 -24.63506 -24.03582 -23.15575 -22.46316 -21.87713 -19.41652 -18.93936 -18.22494 -17.97426 -17.75214 -17.73330 -17.32800 -17.06648 -16.83174 -16.44169 -16.17793 -16.02352 -15.72154 -15.39484 -15.20569 -14.84259 -14.61177 -14.19471 -14.05809 -13.73434 -13.56533 -13.30273 -13.27858 -13.20784 -13.13163 -13.09337 -12.95873 -12.93641 -12.87610 -12.75869 -12.66412 -12.46342 -12.30805 -12.11843 -12.09054 -11.98614 -11.66113 -11.60565 -11.11090 -10.76293 -9.87794 -9.69032 -8.76746 -8.27144 -6.43557 0.27388 0.41007 1.09455 1.31918 1.43331 1.49558 2.32302 2.32468 2.37239 2.63475 2.91314 2.97227 3.13944 3.21043 3.41855 3.78934 3.93320 4.04200 4.06082 4.14505 4.20396 4.23543 4.28484 4.33473 4.37058 4.38228 4.41053 4.41242 4.44636 4.45596 4.51086 4.54696 4.59186 4.63643 4.64284 4.71301 4.74700 4.76172 4.83080 4.85198 4.86088 5.04885 5.11964 5.20074 5.27236 5.29843 5.37426 5.63632 5.64467 5.77159 5.97243 6.08425 6.43182 6.60368 6.93089 7.37569 8.70284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.338 6.338 3 C 0.072 3.928 4 C -0.168 4.168 5 C -0.104 4.104 6 C -0.080 4.080 7 C -0.062 4.062 8 C 0.078 3.922 9 O -0.368 6.368 10 C 0.197 3.803 11 H 0.054 0.946 12 C -0.577 4.577 13 H 0.047 0.953 14 C 0.075 3.925 15 N -0.854 5.854 16 Si 0.904 3.096 17 H -0.274 1.274 18 H -0.299 1.299 19 H -0.287 1.287 20 C 0.020 3.980 21 N -0.257 5.257 22 C -0.042 4.042 23 C -0.043 4.043 24 C -0.050 4.050 25 C -0.177 4.177 26 C 0.071 3.929 27 O -0.334 6.334 28 C 0.022 3.978 29 H 0.068 0.932 30 H 0.110 0.890 31 H 0.068 0.932 32 H 0.162 0.838 33 H 0.165 0.835 34 H 0.102 0.898 35 H 0.054 0.946 36 H 0.011 0.989 37 H 0.063 0.937 38 H 0.261 0.739 39 H 0.114 0.886 40 H 0.127 0.873 41 H 0.096 0.904 42 H 0.136 0.864 43 H 0.119 0.881 44 H 0.122 0.878 45 H 0.141 0.859 46 H 0.106 0.894 47 H 0.101 0.899 48 H 0.144 0.856 49 H 0.123 0.877 50 H 0.130 0.870 51 H 0.115 0.885 52 H 0.056 0.944 53 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.224 12.788 -1.722 22.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.253 6.253 3 C 0.026 3.974 4 C -0.186 4.186 5 C -0.122 4.122 6 C -0.080 4.080 7 C -0.099 4.099 8 C 0.001 3.999 9 O -0.288 6.288 10 C 0.140 3.860 11 H 0.072 0.928 12 C -0.615 4.615 13 H 0.065 0.935 14 C -0.133 4.133 15 N -0.488 5.488 16 Si 0.733 3.267 17 H -0.199 1.199 18 H -0.226 1.226 19 H -0.213 1.213 20 C -0.101 4.101 21 N 0.085 4.915 22 C -0.183 4.183 23 C -0.184 4.184 24 C -0.191 4.191 25 C -0.196 4.196 26 C 0.026 3.974 27 O -0.248 6.248 28 C -0.073 4.073 29 H 0.087 0.913 30 H 0.128 0.872 31 H 0.086 0.914 32 H 0.179 0.821 33 H 0.182 0.818 34 H 0.121 0.879 35 H 0.073 0.927 36 H 0.030 0.970 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.133 0.867 40 H 0.145 0.855 41 H 0.115 0.885 42 H 0.154 0.846 43 H 0.137 0.863 44 H 0.140 0.860 45 H 0.159 0.841 46 H 0.125 0.875 47 H 0.120 0.880 48 H 0.163 0.837 49 H 0.142 0.858 50 H 0.148 0.852 51 H 0.134 0.866 52 H 0.075 0.925 53 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -18.051 12.574 -1.382 22.042 hybrid contribution 2.229 -0.909 -0.465 2.452 sum -15.822 11.665 -1.848 19.744 Atomic orbital electron populations 1.23330 0.76507 1.05305 1.02428 1.86136 1.23303 1.26599 1.89262 1.18643 0.89252 0.86263 1.03208 1.21393 1.01123 0.90783 1.05302 1.21100 0.93140 0.98083 0.99831 1.19644 0.93990 0.94087 1.00306 1.20324 1.00338 0.92545 0.96726 1.22140 0.95353 0.86818 0.95619 1.88044 1.79365 1.31895 1.29493 1.19905 0.94375 0.88771 0.82956 0.92831 1.21554 0.93443 1.40127 1.06350 0.93482 1.25072 0.99653 0.94077 0.94456 1.69914 1.30105 1.41449 1.07363 0.86462 0.83567 0.78648 0.77973 1.19928 1.22602 1.21314 1.24012 0.81056 0.98313 1.06710 1.45961 1.14649 1.15422 1.15476 1.24320 1.05604 1.07012 0.81349 1.24192 1.09503 0.75776 1.08910 1.24238 0.96150 1.04087 0.94648 1.21139 1.00680 0.91028 1.06720 1.18632 0.89082 0.86393 1.03264 1.86113 1.20172 1.29207 1.89340 1.23240 0.77270 1.05019 1.01725 0.91300 0.87204 0.91381 0.82085 0.81794 0.87922 0.92689 0.97039 0.91938 0.92903 0.86734 0.85496 0.88521 0.84625 0.86300 0.85992 0.84082 0.87492 0.87995 0.83747 0.85807 0.85214 0.86630 0.92507 0.92131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.02 9.81 113.37 1.11 1.10 16 2 O -0.34 -3.31 10.28 -79.63 -0.82 -4.13 16 3 C 0.07 0.65 6.70 22.57 0.15 0.80 16 4 C -0.17 -0.24 9.04 22.35 0.20 -0.04 16 5 C -0.10 0.12 9.69 22.27 0.22 0.33 16 6 C -0.08 -0.26 5.13 -19.86 -0.10 -0.37 16 7 C -0.06 -0.08 5.71 29.85 0.17 0.09 16 8 C 0.08 0.18 5.02 71.98 0.36 0.54 16 9 O -0.37 -1.25 5.92 -148.98 -0.88 -2.13 16 10 C 0.20 0.41 1.85 29.85 0.06 0.47 16 11 H 0.05 -0.16 5.54 -2.39 -0.01 -0.17 16 12 C -0.58 -9.42 8.86 25.60 0.23 -9.19 16 13 H 0.05 0.94 7.82 -2.91 -0.02 0.92 16 14 C 0.07 1.55 5.23 84.66 0.44 1.99 16 15 N -0.85 -17.61 11.24 21.45 0.24 -17.37 16 16 Si 0.90 19.58 29.54 68.60 2.03 21.61 16 17 H -0.27 -5.80 7.11 99.48 0.71 -5.09 16 18 H -0.30 -7.38 7.11 99.48 0.71 -6.68 16 19 H -0.29 -6.93 7.11 99.48 0.71 -6.23 16 20 C 0.02 -0.17 3.61 86.30 0.31 0.15 16 21 N -0.26 5.64 0.05 ******* -0.07 5.57 16 22 C -0.04 0.84 7.15 127.69 0.91 1.75 16 23 C -0.04 1.19 8.00 127.69 1.02 2.21 16 24 C -0.05 1.30 7.56 127.69 0.96 2.26 16 25 C -0.18 -1.51 8.69 22.35 0.19 -1.32 16 26 C 0.07 0.84 6.70 22.57 0.15 0.99 16 27 O -0.33 -4.52 10.28 -79.63 -0.82 -5.34 16 28 C 0.02 0.14 9.81 113.37 1.11 1.25 16 29 H 0.07 -0.29 7.65 -2.39 -0.02 -0.31 16 30 H 0.11 -0.38 8.14 -2.39 -0.02 -0.40 16 31 H 0.07 -0.27 7.68 -2.38 -0.02 -0.29 16 32 H 0.16 -0.77 6.30 -2.91 -0.02 -0.79 16 33 H 0.16 -1.52 8.06 -2.91 -0.02 -1.55 16 34 H 0.10 -0.49 8.08 -2.39 -0.02 -0.50 16 35 H 0.05 0.41 8.08 -2.39 -0.02 0.39 16 36 H 0.01 0.12 8.14 -2.39 -0.02 0.10 16 37 H 0.06 -0.30 8.08 -2.39 -0.02 -0.32 16 38 H 0.26 5.91 8.31 -92.71 -0.77 5.14 16 39 H 0.11 -0.13 6.78 -2.39 -0.02 -0.14 16 40 H 0.13 -1.30 8.10 -2.39 -0.02 -1.32 16 41 H 0.10 -1.42 7.97 -2.39 -0.02 -1.44 16 42 H 0.14 -3.82 8.03 -2.38 -0.02 -3.84 16 43 H 0.12 -1.89 4.92 -2.39 -0.01 -1.90 16 44 H 0.12 -3.51 8.12 -2.38 -0.02 -3.53 16 45 H 0.14 -4.67 8.08 -2.39 -0.02 -4.69 16 46 H 0.11 -2.66 8.14 -2.39 -0.02 -2.68 16 47 H 0.10 -2.20 5.89 -2.39 -0.01 -2.21 16 48 H 0.14 -4.66 8.14 -2.39 -0.02 -4.68 16 49 H 0.12 -3.36 8.14 -2.39 -0.02 -3.38 16 50 H 0.13 1.12 6.30 -2.91 -0.02 1.10 16 51 H 0.12 0.27 8.14 -2.39 -0.02 0.25 16 52 H 0.06 0.32 7.66 -2.39 -0.02 0.30 16 53 H 0.06 0.28 7.66 -2.38 -0.02 0.26 16 Total: 0.00 -50.50 411.18 8.05 -42.44 By element: Atomic # 1 Polarization: -44.53 SS G_CDS: 0.87 Total: -43.66 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: 7.51 Total: 3.02 kcal Atomic # 7 Polarization: -11.97 SS G_CDS: 0.17 Total: -11.80 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: -2.52 Total: -11.60 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: 2.03 Total: 21.61 kcal Total: -50.50 8.05 -42.44 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222286644.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.779 kcal (2) G-P(sol) polarization free energy of solvation -50.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds