Wall clock time and date at job start Tue Mar 31 2020 21:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34776 * 120.00234 * 2 1 4 4 O 1.21591 * 119.99694 * 359.97438 * 3 2 1 5 5 N 1.34773 * 120.00238 * 180.02562 * 3 2 1 6 6 C 1.46503 * 120.00092 * 179.97438 * 5 3 2 7 7 C 1.50699 * 109.46955 * 180.02562 * 6 5 3 8 8 O 1.21279 * 120.00114 * 0.02562 * 7 6 5 9 9 N 1.34774 * 119.99904 * 180.02562 * 7 6 5 10 10 C 1.46929 * 120.63085 * 359.71960 * 9 7 6 11 11 C 1.52760 * 109.00966 * 233.58174 * 10 9 7 12 12 C 1.53035 * 109.38339 * 305.59330 * 11 10 9 13 13 C 1.53005 * 109.44777 * 181.25461 * 12 11 10 14 14 H 1.09000 * 109.87331 * 187.16143 * 13 12 11 15 15 C 1.54319 * 109.88342 * 66.14163 * 13 12 11 16 16 C 1.55160 * 102.94011 * 218.39112 * 15 13 12 17 17 C 1.54900 * 101.58218 * 35.50207 * 16 15 13 18 18 N 1.47021 * 109.87765 * 308.33078 * 13 12 11 19 19 C 1.36934 * 125.65382 * 298.33946 * 18 13 12 20 20 H 1.08003 * 119.99800 * 138.14076 * 19 18 13 21 21 C 1.38810 * 119.99934 * 318.13825 * 19 18 13 22 22 N 1.31615 * 120.00222 * 167.08484 * 21 19 18 23 23 Si 1.86799 * 120.00022 * 347.09140 * 21 19 18 24 24 H 1.48492 * 109.47578 * 86.67033 * 23 21 19 25 25 H 1.48502 * 109.46920 * 206.67151 * 23 21 19 26 26 H 1.48507 * 109.46979 * 326.66782 * 23 21 19 27 27 C 1.53040 * 109.54380 * 61.23389 * 12 11 10 28 28 C 1.46927 * 120.63264 * 179.97438 * 9 7 6 29 29 H 1.09001 * 109.47384 * 59.99504 * 1 2 3 30 30 H 1.09006 * 109.46899 * 299.99992 * 1 2 3 31 31 H 1.09000 * 109.47742 * 180.02562 * 1 2 3 32 32 H 0.97001 * 119.99514 * 180.02562 * 2 1 3 33 33 H 0.97001 * 119.99511 * 0.02562 * 5 3 2 34 34 H 1.08999 * 109.46994 * 299.99915 * 6 5 3 35 35 H 1.09001 * 109.46771 * 60.00204 * 6 5 3 36 36 H 1.08999 * 109.58638 * 353.42065 * 10 9 7 37 37 H 1.09002 * 109.58237 * 113.84521 * 10 9 7 38 38 H 1.08998 * 109.56290 * 185.55199 * 11 10 9 39 39 H 1.09002 * 109.35715 * 65.49737 * 11 10 9 40 40 H 1.09000 * 109.45670 * 301.21315 * 12 11 10 41 41 H 1.09001 * 110.72332 * 336.75751 * 15 13 12 42 42 H 1.09006 * 110.71892 * 99.85033 * 15 13 12 43 43 H 1.08998 * 111.00196 * 153.58236 * 16 15 13 44 44 H 1.09005 * 111.00239 * 277.42353 * 16 15 13 45 45 H 1.09004 * 110.36740 * 81.82936 * 17 16 15 46 46 H 1.08996 * 110.36903 * 204.03561 * 17 16 15 47 47 H 0.97000 * 120.00628 * 180.02562 * 22 21 19 48 48 H 1.08996 * 109.49905 * 178.68116 * 27 12 11 49 49 H 1.09000 * 109.49164 * 58.59123 * 27 12 11 50 50 H 1.09001 * 109.59166 * 246.15771 * 28 9 7 51 51 H 1.08999 * 109.58301 * 6.44500 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5309 2.2202 -0.0005 5 7 3.4866 1.1672 -0.0005 6 6 4.2192 2.4359 -0.0011 7 6 5.7008 2.1605 -0.0022 8 8 6.1050 1.0170 -0.0030 9 7 6.5766 3.1848 -0.0024 10 6 6.1022 4.5754 -0.0076 11 6 6.7565 5.3200 -1.1699 12 6 8.2770 5.1746 -1.0747 13 6 8.9353 5.9459 -2.2204 14 1 10.0064 5.7447 -2.2352 15 6 8.6878 7.4590 -2.0448 16 6 8.4527 7.9438 -3.4999 17 6 7.7022 6.7352 -4.1129 18 7 8.3314 5.5505 -3.5012 19 6 8.3505 4.2907 -4.0375 20 1 7.4642 3.8901 -4.5070 21 6 9.5091 3.5285 -3.9777 22 7 9.4660 2.2427 -4.2558 23 14 11.1293 4.3275 -3.5025 24 1 11.2659 4.3285 -2.0239 25 1 12.2526 3.5640 -4.1029 26 1 11.1575 5.7254 -4.0032 27 6 8.6568 3.6952 -1.1714 28 6 8.0240 2.9323 -0.0029 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.9499 -0.8401 -0.0004 33 1 3.9716 0.3271 -0.0013 34 1 3.9555 3.0073 -0.8911 35 1 3.9562 3.0076 0.8889 36 1 5.0190 4.5915 -0.1286 37 1 6.3743 5.0578 0.9312 38 1 6.4884 6.3755 -1.1244 39 1 6.4089 4.8961 -2.1121 40 1 8.6211 5.5763 -0.1216 41 1 7.8044 7.6367 -1.4315 42 1 9.5615 7.9447 -1.6100 43 1 7.8316 8.8393 -3.5177 44 1 9.3993 8.1165 -4.0119 45 1 6.6434 6.7769 -3.8574 46 1 7.8301 6.7185 -5.1952 47 1 10.2755 1.7100 -4.2137 48 1 9.7412 3.5943 -1.1270 49 1 8.2913 3.2867 -2.1136 50 1 8.4557 3.2782 0.9362 51 1 8.2085 1.8642 -0.1184 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230571436.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:13 Heat of formation + Delta-G solvation = -54.250616 kcal Electronic energy + Delta-G solvation = -31521.562855 eV Core-core repulsion = 27455.852342 eV Total energy + Delta-G solvation = -4065.710512 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.62965 -40.84811 -39.98097 -37.73646 -35.72924 -35.47662 -34.75166 -33.99990 -32.08855 -31.68350 -30.03342 -28.95814 -26.82064 -26.34882 -24.99213 -24.23730 -22.24167 -21.92925 -21.63535 -21.18713 -20.27759 -19.61514 -18.47429 -17.88201 -17.63406 -17.41945 -17.12385 -16.62603 -16.53782 -16.15773 -15.41536 -15.35827 -15.21208 -15.12872 -14.96383 -14.83244 -14.54222 -14.33963 -13.96887 -13.91154 -13.65031 -13.44457 -13.39280 -13.06433 -13.01409 -12.93171 -12.69143 -12.41015 -12.10406 -12.00637 -11.91257 -11.82429 -11.66704 -11.52313 -11.44646 -11.13502 -10.96505 -10.73856 -10.49829 -10.28505 -9.88450 -9.60321 -8.53716 -8.14619 -5.55920 1.27363 1.37176 1.42929 1.46622 1.52934 2.06580 2.13979 2.41762 3.15214 3.31150 3.35528 3.47240 3.87379 3.96446 4.04268 4.20057 4.23935 4.25623 4.29594 4.31112 4.38547 4.47864 4.50328 4.52848 4.63534 4.68824 4.76382 4.83484 4.87917 4.88776 4.97003 5.01789 5.08521 5.13301 5.18118 5.24010 5.29363 5.40516 5.42508 5.47710 5.51922 5.60145 5.69213 5.87012 5.90151 6.08920 6.23414 6.36834 6.95958 6.96684 7.03049 7.48518 7.61662 8.32003 9.04667 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.015064 B = 0.003257 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.232179 B = 8594.449390 C = 9126.685505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.740 5.740 3 C 0.701 3.299 4 O -0.631 6.631 5 N -0.733 5.733 6 C 0.131 3.869 7 C 0.506 3.494 8 O -0.582 6.582 9 N -0.595 5.595 10 C 0.103 3.897 11 C -0.110 4.110 12 C -0.080 4.080 13 C 0.136 3.864 14 H 0.008 0.992 15 C -0.119 4.119 16 C -0.126 4.126 17 C 0.121 3.879 18 N -0.613 5.613 19 C -0.220 4.220 20 H 0.033 0.967 21 C 0.005 3.995 22 N -0.949 5.949 23 Si 0.937 3.063 24 H -0.260 1.260 25 H -0.322 1.322 26 H -0.272 1.272 27 C -0.148 4.148 28 C 0.123 3.877 29 H 0.047 0.953 30 H 0.052 0.948 31 H 0.113 0.887 32 H 0.413 0.587 33 H 0.411 0.589 34 H 0.096 0.904 35 H 0.117 0.883 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.045 0.955 40 H 0.082 0.918 41 H 0.099 0.901 42 H 0.079 0.921 43 H 0.100 0.900 44 H 0.051 0.949 45 H 0.038 0.962 46 H 0.028 0.972 47 H 0.259 0.741 48 H 0.039 0.961 49 H 0.084 0.916 50 H 0.085 0.915 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.400 5.046 13.320 18.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.395 5.395 3 C 0.400 3.600 4 O -0.512 6.512 5 N -0.391 5.391 6 C 0.003 3.997 7 C 0.294 3.706 8 O -0.462 6.462 9 N -0.327 5.327 10 C -0.018 4.018 11 C -0.148 4.148 12 C -0.100 4.100 13 C 0.031 3.969 14 H 0.025 0.975 15 C -0.157 4.157 16 C -0.164 4.164 17 C -0.003 4.003 18 N -0.339 5.339 19 C -0.349 4.349 20 H 0.051 0.949 21 C -0.192 4.192 22 N -0.594 5.594 23 Si 0.768 3.232 24 H -0.186 1.186 25 H -0.252 1.252 26 H -0.197 1.197 27 C -0.186 4.186 28 C 0.000 4.000 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.131 0.869 32 H 0.249 0.751 33 H 0.248 0.752 34 H 0.114 0.886 35 H 0.135 0.865 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.115 0.885 39 H 0.064 0.936 40 H 0.100 0.900 41 H 0.117 0.883 42 H 0.097 0.903 43 H 0.118 0.882 44 H 0.070 0.930 45 H 0.056 0.944 46 H 0.046 0.954 47 H 0.068 0.932 48 H 0.058 0.942 49 H 0.103 0.897 50 H 0.103 0.897 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.678 5.206 13.262 18.422 hybrid contribution 1.890 -1.245 -0.623 2.347 sum -9.787 3.961 12.640 16.470 Atomic orbital electron populations 1.21577 0.76768 1.04198 1.01464 1.44884 1.08576 1.06708 1.79374 1.16031 0.81332 0.84887 0.77722 1.90892 1.68589 1.31791 1.59948 1.44756 1.04631 1.09899 1.79800 1.20881 0.86570 0.86922 1.05326 1.20827 0.89289 0.84793 0.75694 1.90646 1.80406 1.22602 1.52596 1.48078 1.06226 1.07308 1.71080 1.22059 1.00164 0.79322 1.00283 1.21688 0.94271 1.01062 0.97813 1.21372 0.96445 0.94005 0.98167 1.21464 0.94180 0.94841 0.86455 0.97509 1.22656 1.03181 0.92530 0.97288 1.22706 1.00163 0.97678 0.95842 1.21893 0.95908 0.86621 0.95866 1.44672 1.66368 1.04745 1.18103 1.18009 0.94267 0.89536 1.33105 0.94949 1.25878 0.99646 0.95472 0.98196 1.69913 1.28841 1.06638 1.53971 0.86150 0.80684 0.78031 0.78356 1.18640 1.25211 1.19703 1.22336 0.98598 0.97291 1.00338 1.21517 0.79494 1.00106 0.98849 0.93442 0.92926 0.86894 0.75122 0.75185 0.88613 0.86532 0.88089 0.88087 0.88508 0.93646 0.90028 0.88274 0.90270 0.88181 0.93007 0.94406 0.95374 0.93186 0.94245 0.89727 0.89688 0.92453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.48 10.70 127.77 1.37 2.85 16 2 N -0.74 -13.50 5.72 -500.19 -2.86 -16.35 16 3 C 0.70 18.55 8.57 179.06 1.53 20.09 16 4 O -0.63 -21.11 16.34 -4.00 -0.07 -21.17 16 5 N -0.73 -18.87 5.53 -482.29 -2.67 -21.54 16 6 C 0.13 3.41 4.50 85.63 0.39 3.80 16 7 C 0.51 16.26 7.77 87.66 0.68 16.94 16 8 O -0.58 -22.79 15.08 -3.03 -0.05 -22.84 16 9 N -0.60 -18.09 2.98 -819.67 -2.44 -20.53 16 10 C 0.10 2.33 6.31 86.22 0.54 2.87 16 11 C -0.11 -3.08 4.90 30.53 0.15 -2.93 16 12 C -0.08 -2.60 1.91 -10.77 -0.02 -2.62 16 13 C 0.14 4.98 2.10 45.34 0.10 5.08 16 14 H 0.01 0.31 3.60 -2.39 -0.01 0.31 16 15 C -0.12 -3.13 6.30 31.78 0.20 -2.93 16 16 C -0.13 -3.46 7.08 31.98 0.23 -3.23 16 17 C 0.12 4.36 7.23 86.85 0.63 4.99 16 18 N -0.61 -26.70 1.59 -668.27 -1.07 -27.76 16 19 C -0.22 -11.95 8.18 84.03 0.69 -11.26 16 20 H 0.03 2.04 8.06 -2.91 -0.02 2.01 16 21 C 0.01 0.29 3.56 84.86 0.30 0.59 16 22 N -0.95 -58.65 13.97 21.65 0.30 -58.35 16 23 Si 0.94 46.46 23.31 68.60 1.60 48.06 16 24 H -0.26 -12.01 5.63 99.48 0.56 -11.45 16 25 H -0.32 -16.69 7.11 99.48 0.71 -15.98 16 26 H -0.27 -13.16 7.11 99.48 0.71 -12.45 16 27 C -0.15 -6.00 3.86 30.68 0.12 -5.88 16 28 C 0.12 4.26 6.44 86.37 0.56 4.82 16 29 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 31 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.41 5.24 8.84 -92.71 -0.82 4.42 16 33 H 0.41 10.23 7.45 -92.71 -0.69 9.54 16 34 H 0.10 2.58 7.68 -2.39 -0.02 2.56 16 35 H 0.12 2.52 7.95 -2.39 -0.02 2.50 16 36 H 0.10 1.89 5.93 -2.39 -0.01 1.88 16 37 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.10 2.12 6.40 -2.39 -0.02 2.10 16 39 H 0.04 1.67 7.25 -2.39 -0.02 1.66 16 40 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.10 2.05 6.15 -2.39 -0.01 2.04 16 42 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 43 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 44 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 45 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 46 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 48 H 0.04 1.72 5.71 -2.39 -0.01 1.71 16 49 H 0.08 4.34 4.56 -2.39 -0.01 4.32 16 50 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 51 H 0.06 2.32 7.00 -2.39 -0.02 2.30 16 Total: -1.00 -78.46 378.25 -0.48 -78.94 By element: Atomic # 1 Polarization: 29.08 SS G_CDS: -0.69 Total: 28.39 kcal Atomic # 6 Polarization: 25.71 SS G_CDS: 7.46 Total: 33.17 kcal Atomic # 7 Polarization: -135.81 SS G_CDS: -8.73 Total: -144.54 kcal Atomic # 8 Polarization: -43.90 SS G_CDS: -0.11 Total: -44.01 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 1.60 Total: 48.06 kcal Total: -78.46 -0.48 -78.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230571436.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.691 kcal (2) G-P(sol) polarization free energy of solvation -78.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds