Wall clock time and date at job start Tue Mar 31 2020 20:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 114.00066 * 2 1 4 4 C 1.52995 * 109.47257 * 179.97438 * 3 2 1 5 5 N 1.46906 * 109.46921 * 67.22344 * 4 3 2 6 6 C 1.38578 * 111.00057 * 163.17905 * 5 4 3 7 7 N 1.31218 * 126.47065 * 110.38179 * 6 5 4 8 8 N 1.28534 * 109.85785 * 180.02562 * 7 6 5 9 9 C 1.30297 * 110.05519 * 0.02562 * 8 7 6 10 10 C 1.50691 * 126.34940 * 179.97438 * 9 8 7 11 11 C 1.53001 * 109.47606 * 90.01661 * 10 9 8 12 12 C 1.50697 * 109.47156 * 180.02562 * 11 10 9 13 13 H 1.08003 * 120.00026 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00046 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99563 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00019 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46987 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46866 * 120.00392 * 16 14 12 19 19 H 1.48499 * 109.46988 * 240.00366 * 16 14 12 20 20 N 1.36452 * 126.47522 * 290.67940 * 6 5 4 21 21 C 1.46497 * 127.13574 * 359.97438 * 20 6 5 22 22 C 1.46899 * 110.99971 * 287.13558 * 5 4 3 23 23 C 1.53181 * 109.54204 * 300.08007 * 22 5 4 24 24 C 1.53107 * 109.15488 * 183.24494 * 23 22 5 25 25 O 1.42898 * 109.49044 * 57.47427 * 24 23 22 26 26 C 1.42902 * 114.09687 * 298.88909 * 25 24 23 27 27 C 1.53092 * 109.41614 * 61.15657 * 26 25 24 28 28 H 1.09005 * 109.47425 * 60.00359 * 1 2 3 29 29 H 1.09004 * 109.47480 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47350 * 299.99835 * 1 2 3 31 31 H 1.09008 * 109.46705 * 59.99723 * 3 2 1 32 32 H 1.09000 * 109.47300 * 300.00315 * 3 2 1 33 33 H 1.08999 * 109.47301 * 307.22653 * 4 3 2 34 34 H 1.08994 * 109.47322 * 187.22154 * 4 3 2 35 35 H 1.09006 * 109.46677 * 330.01560 * 10 9 8 36 36 H 1.08999 * 109.47056 * 210.02237 * 10 9 8 37 37 H 1.08996 * 109.46860 * 59.99767 * 11 10 9 38 38 H 1.08997 * 109.46521 * 300.00080 * 11 10 9 39 39 H 0.97004 * 119.99595 * 179.97438 * 15 14 12 40 40 H 1.08998 * 109.47819 * 275.11215 * 21 20 6 41 41 H 1.09007 * 109.47272 * 35.11028 * 21 20 6 42 42 H 1.08997 * 109.47365 * 155.10600 * 21 20 6 43 43 H 1.09000 * 109.54381 * 60.25472 * 22 5 4 44 44 H 1.09000 * 109.52046 * 303.05603 * 23 22 5 45 45 H 1.09001 * 109.52572 * 63.24880 * 23 22 5 46 46 H 1.08999 * 109.40523 * 297.49240 * 24 23 22 47 47 H 1.09006 * 109.49313 * 177.50858 * 24 23 22 48 48 H 1.08996 * 109.48195 * 301.17252 * 26 25 24 49 49 H 1.09003 * 109.49346 * 181.14856 * 26 25 24 50 50 H 1.09003 * 109.52207 * 182.48611 * 27 26 25 51 51 H 1.08996 * 109.57198 * 62.32923 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9817 0.6112 -1.2761 6 6 5.3363 0.8286 -1.4717 7 7 6.2832 -0.0794 -1.4492 8 7 7.4230 0.4727 -1.6687 9 6 7.2721 1.7553 -1.8422 10 6 8.3658 2.7534 -2.1222 11 6 8.5661 2.8800 -3.6338 12 6 9.6602 3.8778 -3.9136 13 1 10.1628 4.3719 -3.0952 14 6 10.0205 4.1591 -5.2145 15 7 9.4088 3.5571 -6.2109 16 14 11.3762 5.3965 -5.5614 17 1 11.9002 5.9294 -4.2782 18 1 12.4751 4.7308 -6.3060 19 1 10.8314 6.5123 -6.3758 20 7 5.9380 2.0282 -1.7184 21 6 5.2890 3.3369 -1.8300 22 6 3.6622 -0.8207 -1.3504 23 6 4.3620 -1.5618 -0.2070 24 6 4.0894 -3.0626 -0.3399 25 8 4.5397 -3.5176 -1.6175 26 6 3.8846 -2.8932 -2.7234 27 6 4.1507 -1.3860 -2.6876 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.6885 1.8464 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.8482 0.5364 0.8191 34 1 3.9781 2.1723 0.1298 35 1 9.2932 2.4154 -1.6598 36 1 8.0868 3.7232 -1.7102 37 1 7.6387 3.2179 -4.0961 38 1 8.8451 1.9102 -4.0457 39 1 9.6620 3.7553 -7.1261 40 1 4.9252 3.4765 -2.8479 41 1 4.4510 3.3873 -1.1346 42 1 6.0076 4.1205 -1.5902 43 1 2.5841 -0.9584 -1.2683 44 1 5.4358 -1.3819 -0.2596 45 1 3.9780 -1.2037 0.7482 46 1 3.0192 -3.2460 -0.2452 47 1 4.6212 -3.5998 0.4454 48 1 2.8117 -3.0744 -2.6599 49 1 4.2687 -3.3081 -3.6553 50 1 3.6158 -0.9021 -3.5049 51 1 5.2198 -1.2014 -2.7923 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262902571.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:59 Heat of formation + Delta-G solvation = 7.412301 kcal Electronic energy + Delta-G solvation = -31406.393553 eV Core-core repulsion = 27343.356946 eV Total energy + Delta-G solvation = -4063.036608 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.70029 -39.85261 -38.32169 -36.88242 -34.90833 -33.87826 -32.21211 -31.80888 -30.95804 -30.00968 -28.10858 -27.25440 -26.56515 -25.25629 -24.45811 -23.72461 -22.29106 -21.85923 -21.21818 -19.91856 -19.64043 -17.22234 -16.98198 -16.58257 -16.52656 -16.11709 -16.01708 -15.66314 -15.31296 -15.27509 -14.62257 -14.50692 -14.49274 -14.13587 -13.76415 -13.49026 -13.37306 -13.09409 -12.76123 -12.61420 -12.49021 -12.32018 -12.11229 -11.98725 -11.65810 -11.51634 -11.33188 -11.07404 -11.01373 -10.90201 -10.84104 -10.64317 -10.35113 -10.15366 -9.99251 -9.80078 -9.76960 -9.67018 -9.44847 -9.20823 -9.12601 -8.41313 -7.89296 -6.05208 -4.09394 2.13155 2.52488 3.26830 3.28482 3.35681 3.36553 3.39857 3.71070 4.00232 4.41062 4.45986 4.71863 4.73181 4.81119 4.85899 4.92802 4.98734 5.01821 5.07429 5.12593 5.14184 5.25033 5.28546 5.28949 5.30873 5.36761 5.38567 5.47321 5.48462 5.58361 5.61775 5.74128 5.80615 5.83688 5.98129 6.10598 6.24444 6.35491 6.46195 6.46847 6.49648 6.72453 6.74569 6.80394 7.04551 7.31308 7.48149 7.56750 7.70517 7.92512 8.29834 8.97069 9.23722 9.55239 11.05876 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.016116 B = 0.002851 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.958543 B = 9819.748886 C =10716.524510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.384 6.384 3 C 0.067 3.933 4 C 0.049 3.951 5 N -0.445 5.445 6 C 0.330 3.670 7 N -0.308 5.308 8 N -0.298 5.298 9 C 0.211 3.789 10 C -0.030 4.030 11 C 0.032 3.968 12 C -0.524 4.524 13 H 0.059 0.941 14 C 0.059 3.941 15 N -0.891 5.891 16 Si 0.894 3.106 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.284 1.284 20 N -0.479 5.479 21 C 0.080 3.920 22 C 0.103 3.897 23 C -0.198 4.198 24 C 0.075 3.925 25 O -0.379 6.379 26 C 0.071 3.929 27 C -0.163 4.163 28 H 0.042 0.958 29 H 0.085 0.915 30 H 0.040 0.960 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.068 0.932 37 H 0.014 0.986 38 H 0.025 0.975 39 H 0.261 0.739 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.093 0.907 43 H 0.115 0.885 44 H 0.112 0.888 45 H 0.065 0.935 46 H 0.043 0.957 47 H 0.088 0.912 48 H 0.044 0.956 49 H 0.092 0.908 50 H 0.069 0.931 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.864 -5.131 14.079 25.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.303 6.303 3 C -0.010 4.010 4 C -0.078 4.078 5 N -0.169 5.169 6 C -0.026 4.026 7 N -0.153 5.153 8 N -0.136 5.136 9 C -0.056 4.056 10 C -0.070 4.070 11 C -0.006 4.006 12 C -0.562 4.562 13 H 0.077 0.923 14 C -0.143 4.143 15 N -0.530 5.530 16 Si 0.722 3.278 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.211 1.211 20 N -0.174 5.174 21 C -0.063 4.063 22 C -0.004 4.004 23 C -0.237 4.237 24 C -0.003 4.003 25 O -0.297 6.297 26 C -0.006 4.006 27 C -0.202 4.202 28 H 0.061 0.939 29 H 0.103 0.897 30 H 0.058 0.942 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.086 0.914 37 H 0.032 0.968 38 H 0.044 0.956 39 H 0.071 0.929 40 H 0.101 0.899 41 H 0.097 0.903 42 H 0.112 0.888 43 H 0.132 0.868 44 H 0.130 0.870 45 H 0.084 0.916 46 H 0.061 0.939 47 H 0.106 0.894 48 H 0.062 0.938 49 H 0.110 0.890 50 H 0.088 0.912 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -20.225 -6.519 13.620 25.240 hybrid contribution -0.179 2.226 0.048 2.233 sum -20.404 -4.293 13.668 24.931 Atomic orbital electron populations 1.22742 0.81157 1.02785 0.99990 1.87922 1.19626 1.27610 1.95179 1.22548 0.92322 0.85233 1.00892 1.22408 0.94352 1.00679 0.90401 1.59073 1.07461 1.18210 1.32124 1.22459 0.91181 0.83479 1.05445 1.74470 0.94614 1.24659 1.21535 1.74050 1.16686 1.04019 1.18826 1.25550 0.83411 0.95396 1.01249 1.20426 0.91767 0.92393 1.02401 1.19065 0.97075 0.97985 0.86502 1.21176 1.19049 1.23795 0.92163 0.92287 1.25017 0.96607 0.96333 0.96334 1.69987 1.41604 1.42406 0.99001 0.86510 0.81930 0.81049 0.78358 1.19645 1.20906 1.21052 1.46114 1.08079 1.08350 1.54845 1.22023 0.98518 0.81872 1.03865 1.21906 1.01103 0.82025 0.95329 1.23116 1.05558 0.96472 0.98540 1.22368 0.98231 0.93887 0.85810 1.87942 1.64239 1.63666 1.13885 1.22451 0.96036 0.92056 0.90058 1.22505 1.05205 0.95900 0.96544 0.93926 0.89668 0.94166 0.92330 0.91968 0.91649 0.89350 0.89362 0.91378 0.96762 0.95620 0.92924 0.89925 0.90254 0.88816 0.86770 0.86961 0.91628 0.93857 0.89381 0.93782 0.88956 0.91240 0.88264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.29 16 2 O -0.38 -3.31 7.74 -35.23 -0.27 -3.58 16 3 C 0.07 0.52 6.23 37.16 0.23 0.75 16 4 C 0.05 0.49 5.12 -3.82 -0.02 0.47 16 5 N -0.45 -5.79 4.54 -166.74 -0.76 -6.55 16 6 C 0.33 5.43 5.89 -318.88 -1.88 3.55 16 7 N -0.31 -5.97 6.87 30.31 0.21 -5.76 16 8 N -0.30 -6.41 12.18 32.99 0.40 -6.01 16 9 C 0.21 4.16 7.32 -154.02 -1.13 3.04 16 10 C -0.03 -0.61 5.52 -27.89 -0.15 -0.76 16 11 C 0.03 0.81 4.96 -27.88 -0.14 0.67 16 12 C -0.52 -14.29 9.11 -34.44 -0.31 -14.61 16 13 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 15 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 16 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 17 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 20 N -0.48 -7.88 3.20 -121.46 -0.39 -8.27 16 21 C 0.08 0.97 10.92 59.85 0.65 1.62 16 22 C 0.10 1.32 1.98 -67.53 -0.13 1.18 16 23 C -0.20 -2.57 4.73 -26.58 -0.13 -2.70 16 24 C 0.07 0.90 6.84 37.21 0.25 1.15 16 25 O -0.38 -5.50 10.77 -35.23 -0.38 -5.88 16 26 C 0.07 0.90 6.84 37.21 0.25 1.16 16 27 C -0.16 -2.34 5.22 -26.59 -0.14 -2.47 16 28 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.70 5.79 -51.93 -0.30 0.40 16 34 H 0.09 0.81 5.80 -51.93 -0.30 0.51 16 35 H 0.09 1.78 8.14 -51.93 -0.42 1.36 16 36 H 0.07 1.21 7.18 -51.93 -0.37 0.84 16 37 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 40 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.08 0.71 5.98 -51.92 -0.31 0.40 16 42 H 0.09 1.05 7.11 -51.93 -0.37 0.68 16 43 H 0.11 1.35 5.42 -51.93 -0.28 1.07 16 44 H 0.11 1.84 5.29 -51.93 -0.27 1.57 16 45 H 0.07 0.77 6.33 -51.93 -0.33 0.44 16 46 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 47 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 48 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 50 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 51 H 0.10 1.80 5.51 -51.93 -0.29 1.52 16 LS Contribution 391.03 15.07 5.89 5.89 Total: -1.00 -33.73 391.03 -9.49 -43.22 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -8.29 Total: 0.69 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: -1.62 Total: -4.10 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: 0.20 Total: -52.41 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: -0.65 Total: -9.46 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.73 -9.49 -43.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262902571.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.632 kcal (2) G-P(sol) polarization free energy of solvation -33.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds