Wall clock time and date at job start Tue Mar 31 2020 20:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 114.00066 * 2 1 4 4 C 1.52995 * 109.47257 * 179.97438 * 3 2 1 5 5 N 1.46906 * 109.46921 * 67.22344 * 4 3 2 6 6 C 1.38578 * 111.00057 * 163.17905 * 5 4 3 7 7 N 1.31218 * 126.47065 * 110.38179 * 6 5 4 8 8 N 1.28534 * 109.85785 * 180.02562 * 7 6 5 9 9 C 1.30297 * 110.05519 * 0.02562 * 8 7 6 10 10 C 1.50691 * 126.34940 * 179.97438 * 9 8 7 11 11 C 1.53001 * 109.47606 * 90.01661 * 10 9 8 12 12 C 1.50697 * 109.47156 * 180.02562 * 11 10 9 13 13 H 1.08003 * 120.00026 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00046 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99563 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00019 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46987 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46866 * 120.00392 * 16 14 12 19 19 H 1.48499 * 109.46988 * 240.00366 * 16 14 12 20 20 N 1.36452 * 126.47522 * 290.67940 * 6 5 4 21 21 C 1.46497 * 127.13574 * 359.97438 * 20 6 5 22 22 C 1.46899 * 110.99971 * 287.13558 * 5 4 3 23 23 C 1.53181 * 109.54204 * 300.08007 * 22 5 4 24 24 C 1.53107 * 109.15488 * 183.24494 * 23 22 5 25 25 O 1.42898 * 109.49044 * 57.47427 * 24 23 22 26 26 C 1.42902 * 114.09687 * 298.88909 * 25 24 23 27 27 C 1.53092 * 109.41614 * 61.15657 * 26 25 24 28 28 H 1.09005 * 109.47425 * 60.00359 * 1 2 3 29 29 H 1.09004 * 109.47480 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47350 * 299.99835 * 1 2 3 31 31 H 1.09008 * 109.46705 * 59.99723 * 3 2 1 32 32 H 1.09000 * 109.47300 * 300.00315 * 3 2 1 33 33 H 1.08999 * 109.47301 * 307.22653 * 4 3 2 34 34 H 1.08994 * 109.47322 * 187.22154 * 4 3 2 35 35 H 1.09006 * 109.46677 * 330.01560 * 10 9 8 36 36 H 1.08999 * 109.47056 * 210.02237 * 10 9 8 37 37 H 1.08996 * 109.46860 * 59.99767 * 11 10 9 38 38 H 1.08997 * 109.46521 * 300.00080 * 11 10 9 39 39 H 0.97004 * 119.99595 * 179.97438 * 15 14 12 40 40 H 1.08998 * 109.47819 * 275.11215 * 21 20 6 41 41 H 1.09007 * 109.47272 * 35.11028 * 21 20 6 42 42 H 1.08997 * 109.47365 * 155.10600 * 21 20 6 43 43 H 1.09000 * 109.54381 * 60.25472 * 22 5 4 44 44 H 1.09000 * 109.52046 * 303.05603 * 23 22 5 45 45 H 1.09001 * 109.52572 * 63.24880 * 23 22 5 46 46 H 1.08999 * 109.40523 * 297.49240 * 24 23 22 47 47 H 1.09006 * 109.49313 * 177.50858 * 24 23 22 48 48 H 1.08996 * 109.48195 * 301.17252 * 26 25 24 49 49 H 1.09003 * 109.49346 * 181.14856 * 26 25 24 50 50 H 1.09003 * 109.52207 * 182.48611 * 27 26 25 51 51 H 1.08996 * 109.57198 * 62.32923 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9817 0.6112 -1.2761 6 6 5.3363 0.8286 -1.4717 7 7 6.2832 -0.0794 -1.4492 8 7 7.4230 0.4727 -1.6687 9 6 7.2721 1.7553 -1.8422 10 6 8.3658 2.7534 -2.1222 11 6 8.5661 2.8800 -3.6338 12 6 9.6602 3.8778 -3.9136 13 1 10.1628 4.3719 -3.0952 14 6 10.0205 4.1591 -5.2145 15 7 9.4088 3.5571 -6.2109 16 14 11.3762 5.3965 -5.5614 17 1 11.9002 5.9294 -4.2782 18 1 12.4751 4.7308 -6.3060 19 1 10.8314 6.5123 -6.3758 20 7 5.9380 2.0282 -1.7184 21 6 5.2890 3.3369 -1.8300 22 6 3.6622 -0.8207 -1.3504 23 6 4.3620 -1.5618 -0.2070 24 6 4.0894 -3.0626 -0.3399 25 8 4.5397 -3.5176 -1.6175 26 6 3.8846 -2.8932 -2.7234 27 6 4.1507 -1.3860 -2.6876 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.6885 1.8464 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.8482 0.5364 0.8191 34 1 3.9781 2.1723 0.1298 35 1 9.2932 2.4154 -1.6598 36 1 8.0868 3.7232 -1.7102 37 1 7.6387 3.2179 -4.0961 38 1 8.8451 1.9102 -4.0457 39 1 9.6620 3.7553 -7.1261 40 1 4.9252 3.4765 -2.8479 41 1 4.4510 3.3873 -1.1346 42 1 6.0076 4.1205 -1.5902 43 1 2.5841 -0.9584 -1.2683 44 1 5.4358 -1.3819 -0.2596 45 1 3.9780 -1.2037 0.7482 46 1 3.0192 -3.2460 -0.2452 47 1 4.6212 -3.5998 0.4454 48 1 2.8117 -3.0744 -2.6599 49 1 4.2687 -3.3081 -3.6553 50 1 3.6158 -0.9021 -3.5049 51 1 5.2198 -1.2014 -2.7923 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262902571.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:58 Heat of formation + Delta-G solvation = -13.580200 kcal Electronic energy + Delta-G solvation = -31407.303857 eV Core-core repulsion = 27343.356946 eV Total energy + Delta-G solvation = -4063.946911 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.06079 -40.87694 -39.07410 -37.79431 -36.38018 -35.64042 -33.70805 -33.13134 -31.99395 -31.17359 -29.49996 -28.30903 -27.23658 -27.01304 -25.42812 -24.73546 -23.78053 -23.13969 -22.32949 -21.45934 -20.77488 -18.62599 -18.13454 -17.82402 -17.57675 -17.16038 -17.08367 -16.79956 -16.46562 -16.28791 -15.97470 -15.65378 -15.49831 -15.17007 -14.92594 -14.82188 -14.68766 -14.46621 -14.27859 -13.81496 -13.60553 -13.21683 -13.07210 -12.96513 -12.87997 -12.86479 -12.69813 -12.46196 -12.29818 -12.25712 -12.05398 -11.99668 -11.77141 -11.73514 -11.40065 -11.28826 -11.06351 -11.00128 -10.58494 -10.56955 -10.46366 -10.35914 -9.21486 -8.20349 -6.32869 0.79848 1.29355 1.42295 1.44085 1.56743 1.83014 2.41850 2.61401 2.83592 3.02568 3.13982 3.45848 3.63884 3.74926 3.80563 3.91347 4.05093 4.06154 4.16182 4.22391 4.24124 4.34408 4.37983 4.44069 4.48424 4.53449 4.58923 4.63299 4.64560 4.65107 4.68620 4.69490 4.77415 4.84664 4.89043 4.93141 4.95549 4.99995 5.05169 5.14159 5.26060 5.39325 5.45061 5.59633 5.71156 5.73966 5.78857 6.15895 6.22777 6.28615 6.33104 6.83730 7.37344 7.81302 8.91973 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.016116 B = 0.002851 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.958543 B = 9819.748886 C =10716.524510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.405 6.405 3 C 0.072 3.928 4 C 0.046 3.954 5 N -0.442 5.442 6 C 0.347 3.653 7 N -0.335 5.335 8 N -0.338 5.338 9 C 0.193 3.807 10 C -0.013 4.013 11 C 0.044 3.956 12 C -0.537 4.537 13 H 0.073 0.927 14 C -0.001 4.001 15 N -0.935 5.935 16 Si 0.969 3.031 17 H -0.255 1.255 18 H -0.284 1.284 19 H -0.277 1.277 20 N -0.477 5.477 21 C 0.071 3.929 22 C 0.108 3.892 23 C -0.191 4.191 24 C 0.072 3.928 25 O -0.405 6.405 26 C 0.072 3.928 27 C -0.164 4.164 28 H 0.046 0.954 29 H 0.092 0.908 30 H 0.052 0.948 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.098 0.902 37 H -0.006 1.006 38 H -0.021 1.021 39 H 0.263 0.737 40 H 0.078 0.922 41 H 0.116 0.884 42 H 0.104 0.896 43 H 0.135 0.865 44 H 0.077 0.923 45 H 0.080 0.920 46 H 0.069 0.931 47 H 0.095 0.905 48 H 0.074 0.926 49 H 0.092 0.908 50 H 0.070 0.930 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.973 -3.612 15.823 28.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.325 6.325 3 C -0.004 4.004 4 C -0.080 4.080 5 N -0.166 5.166 6 C -0.010 4.010 7 N -0.179 5.179 8 N -0.176 5.176 9 C -0.075 4.075 10 C -0.053 4.053 11 C 0.006 3.994 12 C -0.575 4.575 13 H 0.091 0.909 14 C -0.199 4.199 15 N -0.575 5.575 16 Si 0.793 3.207 17 H -0.179 1.179 18 H -0.210 1.210 19 H -0.203 1.203 20 N -0.171 5.171 21 C -0.070 4.070 22 C 0.002 3.998 23 C -0.230 4.230 24 C -0.005 4.005 25 O -0.324 6.324 26 C -0.005 4.005 27 C -0.202 4.202 28 H 0.065 0.935 29 H 0.111 0.889 30 H 0.071 0.929 31 H 0.103 0.897 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.117 0.883 35 H 0.104 0.896 36 H 0.116 0.884 37 H 0.012 0.988 38 H -0.003 1.003 39 H 0.072 0.928 40 H 0.097 0.903 41 H 0.135 0.865 42 H 0.122 0.878 43 H 0.152 0.848 44 H 0.095 0.905 45 H 0.098 0.902 46 H 0.087 0.913 47 H 0.113 0.887 48 H 0.092 0.908 49 H 0.110 0.890 50 H 0.089 0.911 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -22.358 -4.983 15.393 27.598 hybrid contribution 0.334 1.690 -0.485 1.790 sum -22.023 -3.293 14.908 26.798 Atomic orbital electron populations 1.22876 0.79653 1.03610 1.00788 1.87848 1.21216 1.28088 1.95353 1.22537 0.90228 0.85312 1.02363 1.22590 0.96339 1.00794 0.88316 1.59296 1.04756 1.18576 1.33949 1.22859 0.92155 0.82938 1.03035 1.74481 0.94636 1.25603 1.23191 1.73944 1.18559 1.05222 1.19919 1.25263 0.84780 0.94884 1.02621 1.20107 0.92376 0.94213 0.98557 1.18819 0.95664 0.95048 0.89907 1.21630 1.19306 1.23803 0.92758 0.90862 1.26017 0.99218 0.98432 0.96186 1.70140 1.43573 1.44304 0.99522 0.85343 0.78346 0.78281 0.78734 1.17871 1.21027 1.20304 1.46255 1.07052 1.09765 1.54053 1.22381 0.99790 0.80050 1.04771 1.21949 1.01872 0.81773 0.94240 1.22996 1.03289 0.97454 0.99269 1.22517 0.99803 0.93121 0.85039 1.87908 1.65306 1.64108 1.15074 1.22517 0.97575 0.90624 0.89764 1.22458 1.02416 0.97587 0.97745 0.93549 0.88944 0.92921 0.89699 0.91559 0.92149 0.88256 0.89601 0.88371 0.98807 1.00286 0.92840 0.90343 0.86530 0.87751 0.84788 0.90496 0.90168 0.91318 0.88693 0.90836 0.88986 0.91116 0.92545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 113.37 1.25 1.47 16 2 O -0.41 -5.62 7.74 -148.98 -1.15 -6.77 16 3 C 0.07 0.86 6.23 71.98 0.45 1.31 16 4 C 0.05 0.80 5.12 86.30 0.44 1.24 16 5 N -0.44 -10.95 4.54 -681.43 -3.09 -14.04 16 6 C 0.35 11.47 5.89 260.11 1.53 13.00 16 7 N -0.34 -13.57 6.87 -58.01 -0.40 -13.97 16 8 N -0.34 -15.35 12.18 -49.54 -0.60 -15.95 16 9 C 0.19 7.86 7.32 137.64 1.01 8.87 16 10 C -0.01 -0.53 5.52 29.85 0.16 -0.37 16 11 C 0.04 2.33 4.96 29.85 0.15 2.47 16 12 C -0.54 -29.63 9.11 25.60 0.23 -29.39 16 13 H 0.07 3.75 7.74 -2.91 -0.02 3.73 16 14 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 15 N -0.94 -57.29 13.29 21.45 0.28 -57.01 16 16 Si 0.97 43.49 29.54 68.60 2.03 45.52 16 17 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 18 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 19 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 20 N -0.48 -15.66 3.20 -538.20 -1.72 -17.39 16 21 C 0.07 1.61 10.92 127.77 1.39 3.00 16 22 C 0.11 2.65 1.98 45.04 0.09 2.74 16 23 C -0.19 -4.83 4.73 30.69 0.15 -4.69 16 24 C 0.07 1.65 6.84 72.02 0.49 2.14 16 25 O -0.40 -11.68 10.77 -148.98 -1.60 -13.28 16 26 C 0.07 1.79 6.84 72.01 0.49 2.28 16 27 C -0.16 -4.73 5.22 30.68 0.16 -4.57 16 28 H 0.05 0.36 8.14 -2.38 -0.02 0.34 16 29 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 30 H 0.05 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16 32 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.06 1.15 5.79 -2.39 -0.01 1.14 16 34 H 0.10 1.50 5.80 -2.39 -0.01 1.49 16 35 H 0.09 3.55 8.14 -2.38 -0.02 3.53 16 36 H 0.10 3.39 7.18 -2.39 -0.02 3.38 16 37 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 38 H -0.02 -1.31 8.14 -2.39 -0.02 -1.33 16 39 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 40 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.12 1.71 5.98 -2.38 -0.01 1.70 16 42 H 0.10 2.14 7.11 -2.39 -0.02 2.12 16 43 H 0.13 2.83 5.42 -2.39 -0.01 2.81 16 44 H 0.08 2.59 5.29 -2.39 -0.01 2.58 16 45 H 0.08 1.76 6.33 -2.39 -0.02 1.75 16 46 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 47 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 48 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 49 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 50 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 51 H 0.06 2.16 5.51 -2.39 -0.01 2.15 16 Total: -1.00 -77.32 391.03 3.13 -74.20 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: 0.93 Total: 18.75 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: 8.46 Total: -0.06 kcal Atomic # 7 Polarization: -112.82 SS G_CDS: -5.53 Total: -118.35 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -2.76 Total: -20.05 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -77.32 3.13 -74.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262902571.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.619 kcal (2) G-P(sol) polarization free energy of solvation -77.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds