Wall clock time and date at job start Tue Mar 31 2020 21:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34776 * 120.00253 * 2 1 4 4 O 1.21589 * 119.99812 * 0.02562 * 3 2 1 5 5 N 1.34777 * 120.00522 * 180.02562 * 3 2 1 6 6 C 1.46497 * 120.00308 * 179.97438 * 5 3 2 7 7 C 1.50700 * 109.47161 * 179.97438 * 6 5 3 8 8 O 1.21282 * 120.00188 * 359.97438 * 7 6 5 9 9 N 1.34778 * 119.99829 * 180.02562 * 7 6 5 10 10 C 1.46925 * 120.63000 * 6.28962 * 9 7 6 11 11 C 1.53199 * 108.77099 * 233.63133 * 10 9 7 12 12 C 1.53041 * 109.31199 * 305.36660 * 11 10 9 13 13 C 1.53031 * 109.54074 * 61.36775 * 12 11 10 14 14 C 1.46926 * 120.62858 * 186.30944 * 9 7 6 15 15 H 1.08996 * 109.70661 * 246.22811 * 14 9 7 16 16 C 1.52996 * 109.58800 * 6.58341 * 14 9 7 17 17 H 1.09007 * 109.87603 * 302.59056 * 16 14 9 18 18 C 1.54328 * 109.88398 * 63.76533 * 16 14 9 19 19 C 1.55155 * 102.94154 * 141.61203 * 18 16 14 20 20 C 1.54908 * 101.58487 * 324.49821 * 19 18 16 21 21 N 1.47020 * 109.88506 * 181.57601 * 16 14 9 22 22 C 1.36939 * 125.64978 * 61.60669 * 21 16 14 23 23 H 1.07993 * 119.99940 * 14.76606 * 22 21 16 24 24 C 1.38815 * 119.99987 * 194.77097 * 22 21 16 25 25 N 1.31619 * 119.99866 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99710 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47171 * 59.99939 * 26 24 22 28 28 H 1.48500 * 109.46984 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.46935 * 299.99729 * 26 24 22 30 30 H 1.09000 * 109.46943 * 299.99492 * 1 2 3 31 31 H 1.08999 * 109.47185 * 59.99641 * 1 2 3 32 32 H 1.09003 * 109.46929 * 180.02562 * 1 2 3 33 33 H 0.97003 * 120.00420 * 179.97438 * 2 1 3 34 34 H 0.97003 * 119.99318 * 359.97438 * 5 3 2 35 35 H 1.09005 * 109.46568 * 60.00204 * 6 5 3 36 36 H 1.08997 * 109.47313 * 299.99927 * 6 5 3 37 37 H 1.08996 * 109.58727 * 353.41535 * 10 9 7 38 38 H 1.08997 * 109.58823 * 113.84820 * 10 9 7 39 39 H 1.09000 * 109.49558 * 65.31736 * 11 10 9 40 40 H 1.09005 * 109.49628 * 185.41484 * 11 10 9 41 41 H 1.09004 * 109.45699 * 301.34413 * 12 11 10 42 42 H 1.09007 * 109.45609 * 181.39135 * 12 11 10 43 43 H 1.09004 * 109.50060 * 178.68421 * 13 12 11 44 44 H 1.08997 * 109.50295 * 58.58330 * 13 12 11 45 45 H 1.09001 * 110.72080 * 259.97695 * 18 16 14 46 46 H 1.08996 * 110.72160 * 23.24786 * 18 16 14 47 47 H 1.09002 * 111.00200 * 206.42088 * 19 18 16 48 48 H 1.09006 * 111.03962 * 82.59007 * 19 18 16 49 49 H 1.09000 * 110.36722 * 278.17238 * 20 19 18 50 50 H 1.09002 * 110.46253 * 155.89152 * 20 19 18 51 51 H 0.97001 * 119.99836 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2202 0.0005 5 7 3.4867 1.1672 -0.0005 6 6 4.2191 2.4359 -0.0011 7 6 5.7008 2.1606 -0.0010 8 8 6.1051 1.0171 0.0000 9 7 6.5766 3.1850 -0.0009 10 6 6.1078 4.5706 0.1376 11 6 6.6654 5.3981 -1.0249 12 6 8.1881 5.2508 -1.0664 13 6 8.5543 3.7833 -1.2991 14 6 8.0182 2.9374 -0.1397 15 1 8.5292 3.2150 0.7821 16 6 8.2581 1.4550 -0.4326 17 1 7.8264 0.8457 0.3615 18 6 7.6262 1.0791 -1.7895 19 6 8.6612 0.0937 -2.3937 20 6 9.9963 0.6991 -1.8930 21 7 9.7011 1.1928 -0.5355 22 6 10.6191 1.3774 0.4637 23 1 10.2881 1.5122 1.4828 24 6 11.9750 1.3913 0.1667 25 7 12.3783 1.2265 -1.0753 26 14 13.2271 1.6437 1.5298 27 1 13.0909 0.5585 2.5342 28 1 14.5962 1.6182 0.9552 29 1 12.9895 2.9559 2.1833 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.9500 -0.8400 0.0004 34 1 3.9716 0.3271 -0.0005 35 1 3.9561 3.0076 0.8890 36 1 3.9555 3.0073 -0.8911 37 1 5.0184 4.5920 0.1118 38 1 6.4613 4.9832 1.0824 39 1 6.2397 5.0411 -1.9626 40 1 6.4051 6.4470 -0.8825 41 1 8.6112 5.5849 -0.1189 42 1 8.5897 5.8584 -1.8775 43 1 9.6384 3.6827 -1.3518 44 1 8.1108 3.4415 -2.2342 45 1 6.6645 0.5871 -1.6440 46 1 7.5179 1.9603 -2.4218 47 1 8.6146 0.0973 -3.4827 48 1 8.5176 -0.9134 -2.0020 49 1 10.3048 1.5223 -2.5373 50 1 10.7721 -0.0658 -1.8580 51 1 13.3258 1.2366 -1.2829 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265693201.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:36 Heat of formation + Delta-G solvation = -3.966901 kcal Electronic energy + Delta-G solvation = -31854.476414 eV Core-core repulsion = 27790.946368 eV Total energy + Delta-G solvation = -4063.530047 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.82532 -39.87369 -37.50704 -36.73989 -34.86546 -34.44163 -32.74022 -32.46522 -31.21686 -29.19522 -28.61234 -27.03582 -25.91671 -24.61564 -24.21490 -22.70352 -21.12288 -20.89404 -20.15488 -19.64691 -19.12552 -18.06870 -17.05967 -16.78664 -16.11780 -15.81849 -15.47360 -15.29081 -14.81616 -14.56981 -14.45448 -14.24117 -14.13715 -13.86949 -13.73432 -13.54197 -13.11486 -12.95174 -12.75774 -12.51499 -12.47892 -12.05162 -11.81107 -11.51344 -11.27460 -11.22630 -10.94291 -10.82082 -10.67403 -10.54534 -10.44902 -10.25523 -10.06543 -9.97967 -9.64322 -9.58719 -9.52276 -9.44721 -9.02933 -8.80471 -8.47301 -8.11805 -6.63310 -5.68113 -3.02218 2.44215 2.70197 3.05732 3.22332 3.41544 3.46817 3.47249 4.14004 4.46054 4.54828 4.84339 4.93829 4.98544 5.14724 5.24506 5.26325 5.30232 5.41529 5.45729 5.52702 5.54938 5.56320 5.66503 5.79510 5.89756 5.96221 6.03814 6.07938 6.10733 6.15937 6.20922 6.27347 6.37504 6.46769 6.53159 6.60232 6.71860 6.73522 6.86174 6.93759 7.03965 7.06549 7.49523 7.61920 7.66016 7.72987 7.83894 7.88503 8.30065 8.41405 8.44966 9.28148 9.90449 10.61564 11.43476 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.015181 B = 0.003289 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.989747 B = 8510.996405 C = 9273.823911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.751 5.751 3 C 0.706 3.294 4 O -0.596 6.596 5 N -0.732 5.732 6 C 0.120 3.880 7 C 0.496 3.504 8 O -0.510 6.510 9 N -0.598 5.598 10 C 0.104 3.896 11 C -0.133 4.133 12 C -0.121 4.121 13 C -0.122 4.122 14 C 0.137 3.863 15 H 0.072 0.928 16 C 0.163 3.837 17 H 0.076 0.924 18 C -0.126 4.126 19 C -0.150 4.150 20 C 0.175 3.825 21 N -0.594 5.594 22 C -0.224 4.224 23 H 0.071 0.929 24 C -0.004 4.004 25 N -0.917 5.917 26 Si 0.905 3.095 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.400 0.600 34 H 0.408 0.592 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.090 0.910 44 H 0.062 0.938 45 H 0.080 0.920 46 H 0.052 0.948 47 H 0.049 0.951 48 H 0.054 0.946 49 H 0.021 0.979 50 H 0.066 0.934 51 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.135 2.727 -0.384 19.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.407 5.407 3 C 0.405 3.595 4 O -0.475 6.475 5 N -0.390 5.390 6 C -0.008 4.008 7 C 0.283 3.717 8 O -0.387 6.387 9 N -0.331 5.331 10 C -0.020 4.020 11 C -0.171 4.171 12 C -0.159 4.159 13 C -0.160 4.160 14 C 0.033 3.967 15 H 0.090 0.910 16 C 0.056 3.944 17 H 0.094 0.906 18 C -0.163 4.163 19 C -0.189 4.189 20 C 0.050 3.950 21 N -0.319 5.319 22 C -0.353 4.353 23 H 0.088 0.912 24 C -0.201 4.201 25 N -0.564 5.564 26 Si 0.736 3.264 27 H -0.212 1.212 28 H -0.217 1.217 29 H -0.213 1.213 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.233 0.767 34 H 0.246 0.754 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.109 0.891 44 H 0.080 0.920 45 H 0.098 0.902 46 H 0.071 0.929 47 H 0.068 0.932 48 H 0.073 0.927 49 H 0.039 0.961 50 H 0.084 0.916 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -19.217 3.093 -0.363 19.468 hybrid contribution 1.274 -0.290 0.648 1.458 sum -17.943 2.803 0.286 18.163 Atomic orbital electron populations 1.21381 0.78117 1.01933 1.02214 1.44879 1.07739 1.07250 1.80800 1.15840 0.81472 0.84331 0.77832 1.90920 1.68037 1.30293 1.58204 1.44773 1.04531 1.09920 1.79825 1.20961 0.89444 0.86388 1.04031 1.20275 0.87642 0.85692 0.78085 1.90700 1.77913 1.21609 1.48502 1.48224 1.07922 1.05518 1.71480 1.21782 0.99202 0.81962 0.99041 1.21908 0.97151 0.99449 0.98578 1.21556 0.94573 0.97950 1.01779 1.21918 1.03177 0.92752 0.98187 1.22232 0.76232 0.99884 0.98353 0.91033 1.21656 0.85274 0.90280 0.97176 0.90641 1.23043 0.98780 0.98434 0.96068 1.23005 0.99080 0.98660 0.98169 1.21361 0.91859 0.96550 0.85193 1.44678 1.01799 1.74849 1.10581 1.18905 0.86171 1.42590 0.87598 0.91154 1.24863 0.97048 1.02042 0.96152 1.69938 1.14140 1.55819 1.16508 0.86311 0.80882 0.78056 0.81187 1.21250 1.21730 1.21254 0.92428 0.92403 0.90685 0.76699 0.75405 0.89095 0.88979 0.90126 0.91178 0.91677 0.91196 0.92072 0.92220 0.89110 0.91959 0.90233 0.92933 0.93228 0.92709 0.96139 0.91612 0.93806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.76 10.70 59.84 0.64 1.40 16 2 N -0.75 -6.53 5.72 -72.07 -0.41 -6.94 16 3 C 0.71 8.64 8.57 -86.92 -0.74 7.89 16 4 O -0.60 -9.36 16.34 5.29 0.09 -9.28 16 5 N -0.73 -8.36 5.53 -66.42 -0.37 -8.72 16 6 C 0.12 1.39 4.51 -5.20 -0.02 1.37 16 7 C 0.50 6.99 6.94 -10.98 -0.08 6.91 16 8 O -0.51 -8.53 8.94 5.56 0.05 -8.48 16 9 N -0.60 -8.46 2.94 -165.22 -0.48 -8.94 16 10 C 0.10 1.11 6.35 -3.71 -0.02 1.09 16 11 C -0.13 -1.42 6.08 -26.61 -0.16 -1.58 16 12 C -0.12 -1.63 5.88 -26.69 -0.16 -1.78 16 13 C -0.12 -2.11 4.96 -26.61 -0.13 -2.25 16 14 C 0.14 2.46 2.67 -67.60 -0.18 2.28 16 15 H 0.07 1.44 7.94 -51.93 -0.41 1.03 16 16 C 0.16 3.41 2.29 -66.95 -0.15 3.25 16 17 H 0.08 1.74 5.87 -52.27 -0.31 1.44 16 18 C -0.13 -2.38 4.92 -24.90 -0.12 -2.50 16 19 C -0.15 -3.04 7.08 -24.58 -0.17 -3.21 16 20 C 0.18 4.29 5.41 -2.53 -0.01 4.28 16 21 N -0.59 -14.80 2.61 -162.57 -0.42 -15.23 16 22 C -0.22 -6.09 9.77 -15.06 -0.15 -6.24 16 23 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 24 C 0.00 -0.12 5.47 -17.43 -0.10 -0.22 16 25 N -0.92 -26.53 10.58 55.49 0.59 -25.95 16 26 Si 0.90 21.94 29.55 -169.99 -5.02 16.92 16 27 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 28 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 29 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.40 2.47 8.84 -40.82 -0.36 2.11 16 34 H 0.41 4.44 7.45 -40.82 -0.30 4.13 16 35 H 0.09 0.99 7.68 -51.93 -0.40 0.59 16 36 H 0.09 1.02 7.95 -51.93 -0.41 0.61 16 37 H 0.08 0.69 5.93 -51.93 -0.31 0.39 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 43 H 0.09 1.94 7.87 -51.93 -0.41 1.53 16 44 H 0.06 1.09 5.69 -51.93 -0.30 0.79 16 45 H 0.08 1.46 5.60 -51.98 -0.29 1.17 16 46 H 0.05 0.96 5.43 -51.93 -0.28 0.68 16 47 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 48 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 49 H 0.02 0.54 8.06 -51.93 -0.42 0.12 16 50 H 0.07 1.81 6.93 -51.93 -0.36 1.45 16 51 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 383.94 15.07 5.79 5.79 Total: -1.00 -32.79 383.94 -10.10 -42.89 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -8.33 Total: 7.24 kcal Atomic # 6 Polarization: 12.27 SS G_CDS: -1.56 Total: 10.70 kcal Atomic # 7 Polarization: -64.68 SS G_CDS: -1.10 Total: -65.78 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: 0.14 Total: -17.76 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.79 -10.10 -42.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265693201.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.928 kcal (2) G-P(sol) polarization free energy of solvation -32.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds