Wall clock time and date at job start Tue Mar 31 2020 21:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34776 * 120.00253 * 2 1 4 4 O 1.21589 * 119.99812 * 0.02562 * 3 2 1 5 5 N 1.34777 * 120.00522 * 180.02562 * 3 2 1 6 6 C 1.46497 * 120.00308 * 179.97438 * 5 3 2 7 7 C 1.50700 * 109.47161 * 179.97438 * 6 5 3 8 8 O 1.21282 * 120.00188 * 359.97438 * 7 6 5 9 9 N 1.34778 * 119.99829 * 180.02562 * 7 6 5 10 10 C 1.46925 * 120.63000 * 6.28962 * 9 7 6 11 11 C 1.53199 * 108.77099 * 233.63133 * 10 9 7 12 12 C 1.53041 * 109.31199 * 305.36660 * 11 10 9 13 13 C 1.53031 * 109.54074 * 61.36775 * 12 11 10 14 14 C 1.46926 * 120.62858 * 186.30944 * 9 7 6 15 15 H 1.08996 * 109.70661 * 246.22811 * 14 9 7 16 16 C 1.52996 * 109.58800 * 6.58341 * 14 9 7 17 17 H 1.09007 * 109.87603 * 302.59056 * 16 14 9 18 18 C 1.54328 * 109.88398 * 63.76533 * 16 14 9 19 19 C 1.55155 * 102.94154 * 141.61203 * 18 16 14 20 20 C 1.54908 * 101.58487 * 324.49821 * 19 18 16 21 21 N 1.47020 * 109.88506 * 181.57601 * 16 14 9 22 22 C 1.36939 * 125.64978 * 61.60669 * 21 16 14 23 23 H 1.07993 * 119.99940 * 14.76606 * 22 21 16 24 24 C 1.38815 * 119.99987 * 194.77097 * 22 21 16 25 25 N 1.31619 * 119.99866 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99710 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47171 * 59.99939 * 26 24 22 28 28 H 1.48500 * 109.46984 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.46935 * 299.99729 * 26 24 22 30 30 H 1.09000 * 109.46943 * 299.99492 * 1 2 3 31 31 H 1.08999 * 109.47185 * 59.99641 * 1 2 3 32 32 H 1.09003 * 109.46929 * 180.02562 * 1 2 3 33 33 H 0.97003 * 120.00420 * 179.97438 * 2 1 3 34 34 H 0.97003 * 119.99318 * 359.97438 * 5 3 2 35 35 H 1.09005 * 109.46568 * 60.00204 * 6 5 3 36 36 H 1.08997 * 109.47313 * 299.99927 * 6 5 3 37 37 H 1.08996 * 109.58727 * 353.41535 * 10 9 7 38 38 H 1.08997 * 109.58823 * 113.84820 * 10 9 7 39 39 H 1.09000 * 109.49558 * 65.31736 * 11 10 9 40 40 H 1.09005 * 109.49628 * 185.41484 * 11 10 9 41 41 H 1.09004 * 109.45699 * 301.34413 * 12 11 10 42 42 H 1.09007 * 109.45609 * 181.39135 * 12 11 10 43 43 H 1.09004 * 109.50060 * 178.68421 * 13 12 11 44 44 H 1.08997 * 109.50295 * 58.58330 * 13 12 11 45 45 H 1.09001 * 110.72080 * 259.97695 * 18 16 14 46 46 H 1.08996 * 110.72160 * 23.24786 * 18 16 14 47 47 H 1.09002 * 111.00200 * 206.42088 * 19 18 16 48 48 H 1.09006 * 111.03962 * 82.59007 * 19 18 16 49 49 H 1.09000 * 110.36722 * 278.17238 * 20 19 18 50 50 H 1.09002 * 110.46253 * 155.89152 * 20 19 18 51 51 H 0.97001 * 119.99836 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2202 0.0005 5 7 3.4867 1.1672 -0.0005 6 6 4.2191 2.4359 -0.0011 7 6 5.7008 2.1606 -0.0010 8 8 6.1051 1.0171 0.0000 9 7 6.5766 3.1850 -0.0009 10 6 6.1078 4.5706 0.1376 11 6 6.6654 5.3981 -1.0249 12 6 8.1881 5.2508 -1.0664 13 6 8.5543 3.7833 -1.2991 14 6 8.0182 2.9374 -0.1397 15 1 8.5292 3.2150 0.7821 16 6 8.2581 1.4550 -0.4326 17 1 7.8264 0.8457 0.3615 18 6 7.6262 1.0791 -1.7895 19 6 8.6612 0.0937 -2.3937 20 6 9.9963 0.6991 -1.8930 21 7 9.7011 1.1928 -0.5355 22 6 10.6191 1.3774 0.4637 23 1 10.2881 1.5122 1.4828 24 6 11.9750 1.3913 0.1667 25 7 12.3783 1.2265 -1.0753 26 14 13.2271 1.6437 1.5298 27 1 13.0909 0.5585 2.5342 28 1 14.5962 1.6182 0.9552 29 1 12.9895 2.9559 2.1833 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.9500 -0.8400 0.0004 34 1 3.9716 0.3271 -0.0005 35 1 3.9561 3.0076 0.8890 36 1 3.9555 3.0073 -0.8911 37 1 5.0184 4.5920 0.1118 38 1 6.4613 4.9832 1.0824 39 1 6.2397 5.0411 -1.9626 40 1 6.4051 6.4470 -0.8825 41 1 8.6112 5.5849 -0.1189 42 1 8.5897 5.8584 -1.8775 43 1 9.6384 3.6827 -1.3518 44 1 8.1108 3.4415 -2.2342 45 1 6.6645 0.5871 -1.6440 46 1 7.5179 1.9603 -2.4218 47 1 8.6146 0.0973 -3.4827 48 1 8.5176 -0.9134 -2.0020 49 1 10.3048 1.5223 -2.5373 50 1 10.7721 -0.0658 -1.8580 51 1 13.3258 1.2366 -1.2829 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265693201.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:34 Heat of formation + Delta-G solvation = -27.359432 kcal Electronic energy + Delta-G solvation = -31855.490791 eV Core-core repulsion = 27790.946368 eV Total energy + Delta-G solvation = -4064.544423 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -42.04451 -40.85003 -38.93339 -38.12022 -35.69754 -35.43053 -34.47196 -33.85538 -32.59569 -31.13038 -29.55180 -28.46920 -26.83372 -26.43241 -25.47784 -24.05837 -22.29633 -21.97019 -21.66459 -21.20169 -20.12423 -19.28800 -18.80718 -17.71549 -17.36857 -17.13314 -16.68792 -16.47623 -16.33330 -16.09888 -15.67544 -15.36068 -15.28592 -15.14824 -14.80216 -14.73471 -14.31921 -14.19535 -13.89461 -13.87562 -13.60135 -13.46373 -13.00201 -12.98236 -12.90711 -12.76848 -12.67380 -12.53268 -12.07094 -11.93880 -11.90741 -11.65378 -11.57066 -11.46205 -11.30894 -11.17100 -11.09804 -10.65545 -10.41848 -10.13651 -9.80505 -9.40067 -8.65846 -7.81368 -5.16788 1.44502 1.46598 1.52862 1.54721 1.59225 2.13925 2.15867 2.52550 3.32819 3.38523 3.46765 3.80050 3.93707 3.96300 4.00826 4.14709 4.23335 4.33772 4.36469 4.38960 4.39365 4.48142 4.51174 4.57405 4.70213 4.71694 4.81049 4.87782 4.91830 4.99809 5.03233 5.08195 5.11424 5.23746 5.28460 5.30809 5.34846 5.36460 5.50671 5.52654 5.54361 5.62907 5.70757 5.80444 5.86850 5.97620 6.27817 6.52617 7.04289 7.14103 7.22019 7.55429 7.86484 8.55467 9.29196 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.015181 B = 0.003289 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.989747 B = 8510.996405 C = 9273.823911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.741 5.741 3 C 0.701 3.299 4 O -0.633 6.633 5 N -0.730 5.730 6 C 0.130 3.870 7 C 0.497 3.503 8 O -0.541 6.541 9 N -0.597 5.597 10 C 0.098 3.902 11 C -0.124 4.124 12 C -0.117 4.117 13 C -0.111 4.111 14 C 0.150 3.850 15 H 0.044 0.956 16 C 0.162 3.838 17 H 0.057 0.943 18 C -0.109 4.109 19 C -0.140 4.140 20 C 0.184 3.816 21 N -0.611 5.611 22 C -0.230 4.230 23 H 0.068 0.932 24 C -0.058 4.058 25 N -0.946 5.946 26 Si 0.967 3.033 27 H -0.281 1.281 28 H -0.295 1.295 29 H -0.277 1.277 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.110 0.890 33 H 0.413 0.587 34 H 0.412 0.588 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.112 0.888 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.102 0.898 41 H 0.056 0.944 42 H 0.067 0.933 43 H 0.040 0.960 44 H 0.061 0.939 45 H 0.094 0.906 46 H 0.061 0.939 47 H 0.074 0.926 48 H 0.054 0.946 49 H -0.005 1.005 50 H 0.027 0.973 51 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.936 3.655 -0.098 22.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.396 5.396 3 C 0.401 3.599 4 O -0.514 6.514 5 N -0.388 5.388 6 C 0.002 3.998 7 C 0.286 3.714 8 O -0.420 6.420 9 N -0.330 5.330 10 C -0.024 4.024 11 C -0.162 4.162 12 C -0.155 4.155 13 C -0.150 4.150 14 C 0.044 3.956 15 H 0.062 0.938 16 C 0.056 3.944 17 H 0.074 0.926 18 C -0.146 4.146 19 C -0.178 4.178 20 C 0.059 3.941 21 N -0.336 5.336 22 C -0.359 4.359 23 H 0.086 0.914 24 C -0.252 4.252 25 N -0.594 5.594 26 Si 0.796 3.204 27 H -0.208 1.208 28 H -0.221 1.221 29 H -0.203 1.203 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.128 0.872 33 H 0.249 0.751 34 H 0.250 0.750 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.130 0.870 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.120 0.880 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.058 0.942 44 H 0.080 0.920 45 H 0.112 0.888 46 H 0.079 0.921 47 H 0.093 0.907 48 H 0.073 0.927 49 H 0.013 0.987 50 H 0.046 0.954 51 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -22.071 4.013 -0.060 22.433 hybrid contribution 2.084 -0.626 0.595 2.256 sum -19.987 3.387 0.535 20.279 Atomic orbital electron populations 1.21548 0.77001 1.04045 1.01390 1.44888 1.08470 1.06863 1.79421 1.16024 0.81488 0.84721 0.77705 1.90892 1.68690 1.31804 1.60050 1.44745 1.04414 1.10022 1.79657 1.20908 0.86899 0.86765 1.05223 1.20732 0.88710 0.85072 0.76930 1.90675 1.78601 1.22812 1.49871 1.48173 1.06018 1.07454 1.71337 1.22100 1.01069 0.79611 0.99585 1.21882 0.94226 1.01421 0.98691 1.21526 0.97299 0.94818 1.01860 1.21724 0.99787 0.95717 0.97733 1.21630 0.78875 0.97752 0.97296 0.93767 1.21686 0.82854 0.92049 0.97841 0.92590 1.22946 0.98663 0.98372 0.94604 1.22901 0.96669 0.98570 0.99692 1.21104 0.93181 0.94701 0.85139 1.44881 1.03276 1.75272 1.10171 1.19152 0.86994 1.41590 0.88184 0.91388 1.25587 0.98768 1.02601 0.98244 1.70140 1.13794 1.57234 1.18246 0.85323 0.78193 0.78224 0.78643 1.20777 1.22119 1.20293 0.93266 0.93218 0.87151 0.75143 0.75045 0.87806 0.87648 0.86969 0.90397 0.91258 0.87963 0.92488 0.91413 0.94163 0.92031 0.88760 0.92107 0.90745 0.92733 0.98674 0.95443 0.94537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.23 10.70 127.77 1.37 2.60 16 2 N -0.74 -11.17 5.72 -500.20 -2.86 -14.03 16 3 C 0.70 15.67 8.57 179.05 1.53 17.20 16 4 O -0.63 -18.67 16.34 -4.00 -0.07 -18.74 16 5 N -0.73 -14.98 5.53 -482.30 -2.67 -17.65 16 6 C 0.13 2.63 4.51 85.63 0.39 3.01 16 7 C 0.50 13.02 6.94 87.66 0.61 13.63 16 8 O -0.54 -17.49 8.94 -3.04 -0.03 -17.52 16 9 N -0.60 -15.86 2.94 -795.02 -2.33 -18.20 16 10 C 0.10 1.78 6.35 86.36 0.55 2.33 16 11 C -0.12 -2.21 6.08 30.67 0.19 -2.02 16 12 C -0.12 -3.00 5.88 30.62 0.18 -2.82 16 13 C -0.11 -3.90 4.96 30.67 0.15 -3.75 16 14 C 0.15 5.43 2.67 44.98 0.12 5.55 16 15 H 0.04 1.84 7.94 -2.39 -0.02 1.82 16 16 C 0.16 6.87 2.29 45.34 0.10 6.98 16 17 H 0.06 2.65 5.87 -8.80 -0.05 2.60 16 18 C -0.11 -4.03 4.92 31.78 0.16 -3.88 16 19 C -0.14 -5.65 7.08 31.98 0.23 -5.43 16 20 C 0.18 9.44 5.41 86.85 0.47 9.91 16 21 N -0.61 -31.76 2.61 -668.24 -1.74 -33.50 16 22 C -0.23 -13.01 9.77 84.03 0.82 -12.19 16 23 H 0.07 3.79 7.83 -2.91 -0.02 3.77 16 24 C -0.06 -3.36 5.47 84.86 0.46 -2.90 16 25 N -0.95 -57.35 10.58 21.65 0.23 -57.12 16 26 Si 0.97 46.43 29.55 68.60 2.03 48.46 16 27 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 28 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 29 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 30 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.05 0.68 8.14 -2.39 -0.02 0.67 16 32 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.41 4.04 8.84 -92.71 -0.82 3.22 16 34 H 0.41 8.11 7.45 -92.71 -0.69 7.42 16 35 H 0.10 1.90 7.68 -2.38 -0.02 1.88 16 36 H 0.11 1.93 7.95 -2.39 -0.02 1.91 16 37 H 0.11 1.40 5.93 -2.39 -0.01 1.39 16 38 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16 41 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 42 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 43 H 0.04 1.81 7.87 -2.39 -0.02 1.79 16 44 H 0.06 2.13 5.69 -2.39 -0.01 2.12 16 45 H 0.09 3.30 5.60 -4.06 -0.02 3.28 16 46 H 0.06 2.16 5.43 -2.39 -0.01 2.15 16 47 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 48 H 0.05 2.20 8.14 -2.38 -0.02 2.18 16 49 H 0.00 -0.26 8.06 -2.39 -0.02 -0.28 16 50 H 0.03 1.59 6.93 -2.39 -0.02 1.57 16 51 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -75.53 383.94 -0.72 -76.25 By element: Atomic # 1 Polarization: 24.42 SS G_CDS: -0.60 Total: 23.81 kcal Atomic # 6 Polarization: 20.91 SS G_CDS: 7.33 Total: 28.23 kcal Atomic # 7 Polarization: -131.12 SS G_CDS: -9.37 Total: -140.49 kcal Atomic # 8 Polarization: -36.17 SS G_CDS: -0.09 Total: -36.26 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -75.53 -0.72 -76.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265693201.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.889 kcal (2) G-P(sol) polarization free energy of solvation -75.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds