Wall clock time and date at job start Tue Mar 31 2020 21:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34786 * 119.99853 * 2 1 4 4 O 1.21586 * 119.99936 * 0.02562 * 3 2 1 5 5 N 1.34770 * 119.99923 * 180.02562 * 3 2 1 6 6 C 1.46500 * 120.00293 * 180.02562 * 5 3 2 7 7 C 1.50697 * 109.47411 * 180.02562 * 6 5 3 8 8 O 1.21288 * 120.00075 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00062 * 179.97438 * 7 6 5 10 10 C 1.46920 * 120.62922 * 354.72704 * 9 7 6 11 11 C 1.53628 * 108.54621 * 126.36933 * 10 9 7 12 12 C 1.53045 * 109.24139 * 54.85416 * 11 10 9 13 13 C 1.53040 * 109.53635 * 298.51250 * 12 11 10 14 14 C 1.46932 * 120.63040 * 175.00526 * 9 7 6 15 15 H 1.08996 * 109.58399 * 113.65358 * 14 9 7 16 16 C 1.53002 * 109.58661 * 353.37326 * 14 9 7 17 17 H 1.09002 * 109.86936 * 320.29974 * 16 14 9 18 18 C 1.54323 * 109.88251 * 81.47524 * 16 14 9 19 19 C 1.55158 * 102.93876 * 141.60987 * 18 16 14 20 20 C 1.54910 * 101.58332 * 324.49997 * 19 18 16 21 21 N 1.47023 * 109.88178 * 199.28938 * 16 14 9 22 22 C 1.36939 * 125.65196 * 61.67236 * 21 16 14 23 23 H 1.08000 * 119.99606 * 18.76922 * 22 21 16 24 24 C 1.38812 * 119.99945 * 198.76200 * 22 21 16 25 25 N 1.31615 * 120.00022 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99703 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.46957 * 0.02562 * 26 24 22 28 28 H 1.48504 * 109.46939 * 120.00530 * 26 24 22 29 29 H 1.48507 * 109.47134 * 240.00002 * 26 24 22 30 30 H 1.08995 * 109.47087 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47324 * 59.99235 * 1 2 3 32 32 H 1.09006 * 109.46533 * 299.99575 * 1 2 3 33 33 H 0.96992 * 120.00169 * 180.02562 * 2 1 3 34 34 H 0.97003 * 119.99907 * 0.02562 * 5 3 2 35 35 H 1.09001 * 109.46669 * 299.99943 * 6 5 3 36 36 H 1.08996 * 109.47085 * 59.99571 * 6 5 3 37 37 H 1.09003 * 109.58714 * 246.19789 * 10 9 7 38 38 H 1.08993 * 109.58861 * 6.62036 * 10 9 7 39 39 H 1.09000 * 109.63190 * 294.86442 * 11 10 9 40 40 H 1.08998 * 109.45694 * 174.73824 * 11 10 9 41 41 H 1.08996 * 109.45753 * 178.49287 * 12 11 10 42 42 H 1.08997 * 109.45878 * 58.53193 * 12 11 10 43 43 H 1.08999 * 109.50271 * 301.41309 * 13 12 11 44 44 H 1.09003 * 109.52563 * 181.33226 * 13 12 11 45 45 H 1.08992 * 110.72133 * 259.97309 * 18 16 14 46 46 H 1.09001 * 110.71737 * 23.24764 * 18 16 14 47 47 H 1.09003 * 111.00583 * 206.42281 * 19 18 16 48 48 H 1.08996 * 111.00546 * 82.57397 * 19 18 16 49 49 H 1.09000 * 110.36641 * 278.17157 * 20 19 18 50 50 H 1.09004 * 110.36614 * 155.85202 * 20 19 18 51 51 H 0.97003 * 119.99691 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5309 2.2202 0.0005 5 7 3.4866 1.1673 -0.0005 6 6 4.2191 2.4360 0.0000 7 6 5.7007 2.1607 -0.0013 8 8 6.1051 1.0172 -0.0022 9 7 6.5766 3.1851 -0.0016 10 6 6.1060 4.5721 -0.1168 11 6 6.6846 5.3831 1.0527 12 6 8.2079 5.2353 1.0640 13 6 8.5779 3.7645 1.2686 14 6 8.0204 2.9356 0.1071 15 1 8.5123 3.2261 -0.8212 16 6 8.2654 1.4490 0.3739 17 1 7.5176 1.0694 1.0702 18 6 8.2017 0.6605 -0.9512 19 6 9.3289 -0.3924 -0.7834 20 6 10.3902 0.4115 0.0084 21 7 9.6118 1.2565 0.9322 22 6 10.0671 1.7754 2.1149 23 1 9.3646 2.1174 2.8605 24 6 11.4315 1.8618 2.3553 25 7 12.2876 1.4454 1.4464 26 14 12.0526 2.5691 3.9688 27 1 10.8969 2.9613 4.8148 28 1 12.8609 1.5457 4.6793 29 1 12.8939 3.7619 3.6953 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 -0.8898 32 1 -0.3632 0.5138 0.8901 33 1 1.9500 -0.8400 -0.0004 34 1 3.9716 0.3272 -0.0013 35 1 3.9555 3.0081 -0.8895 36 1 3.9561 3.0070 0.8904 37 1 6.4454 4.9958 -1.0620 38 1 5.0171 4.5933 -0.0746 39 1 6.2762 5.0124 1.9929 40 1 6.4219 6.4339 0.9310 41 1 8.6244 5.8309 1.8763 42 1 8.6135 5.5831 0.1140 43 1 8.1517 3.4091 2.2067 44 1 9.6628 3.6627 1.3003 45 1 7.2331 0.1738 -1.0642 46 1 8.4075 1.3140 -1.7990 47 1 9.7185 -0.7055 -1.7521 48 1 8.9798 -1.2503 -0.2088 49 1 10.9789 1.0314 -0.6679 50 1 11.0387 -0.2636 0.5669 51 1 13.2410 1.5062 1.6143 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265693202.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:38 Heat of formation + Delta-G solvation = -24.983018 kcal Electronic energy + Delta-G solvation = -31860.184041 eV Core-core repulsion = 27795.742667 eV Total energy + Delta-G solvation = -4064.441374 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.93254 -40.84036 -38.93936 -38.12009 -35.69613 -35.43889 -34.52013 -33.81370 -32.74864 -31.04005 -29.45973 -28.51898 -26.81023 -26.51127 -25.48523 -23.77242 -22.34810 -21.97065 -21.45129 -20.93871 -20.46343 -19.48237 -18.84109 -17.73256 -17.34424 -17.18722 -16.80997 -16.48351 -16.12292 -16.00178 -15.63723 -15.34126 -15.28692 -15.13410 -14.75802 -14.32751 -14.26433 -14.03007 -13.89505 -13.74103 -13.60822 -13.56493 -13.39403 -12.99989 -12.98835 -12.71540 -12.70102 -12.36944 -12.11956 -11.93679 -11.88521 -11.69895 -11.47415 -11.39559 -11.35860 -11.20628 -10.85273 -10.50152 -10.42463 -10.10421 -9.81257 -9.43174 -8.58665 -7.80464 -5.15210 1.43965 1.45811 1.54057 1.55352 1.60706 2.13045 2.17774 2.52895 3.32780 3.38356 3.48295 3.78840 3.95217 4.05484 4.08831 4.17787 4.27034 4.34603 4.37685 4.38009 4.46215 4.49899 4.52402 4.60012 4.70936 4.71440 4.82105 4.90617 4.98082 4.98780 5.01077 5.09839 5.14219 5.22239 5.32884 5.33717 5.39257 5.46284 5.51983 5.57015 5.60811 5.69671 5.77672 5.80883 5.91407 5.98173 6.29796 6.53108 7.04304 7.15836 7.25963 7.54836 7.86079 8.56938 9.31520 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.014472 B = 0.003411 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.286957 B = 8206.427013 C = 9043.210666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.741 5.741 3 C 0.701 3.299 4 O -0.633 6.633 5 N -0.729 5.729 6 C 0.129 3.871 7 C 0.495 3.505 8 O -0.540 6.540 9 N -0.597 5.597 10 C 0.100 3.900 11 C -0.126 4.126 12 C -0.121 4.121 13 C -0.113 4.113 14 C 0.150 3.850 15 H 0.050 0.950 16 C 0.165 3.835 17 H 0.053 0.947 18 C -0.100 4.100 19 C -0.139 4.139 20 C 0.182 3.818 21 N -0.614 5.614 22 C -0.207 4.207 23 H 0.073 0.927 24 C -0.061 4.061 25 N -0.946 5.946 26 Si 0.958 3.042 27 H -0.267 1.267 28 H -0.298 1.298 29 H -0.292 1.292 30 H 0.111 0.889 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.413 0.587 34 H 0.412 0.588 35 H 0.107 0.893 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.109 0.891 39 H 0.059 0.941 40 H 0.100 0.900 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.039 0.961 44 H 0.071 0.929 45 H 0.102 0.898 46 H 0.046 0.954 47 H 0.074 0.926 48 H 0.056 0.944 49 H -0.003 1.003 50 H 0.022 0.978 51 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.574 2.185 -5.696 21.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.396 5.396 3 C 0.400 3.600 4 O -0.515 6.515 5 N -0.388 5.388 6 C 0.001 3.999 7 C 0.284 3.716 8 O -0.419 6.419 9 N -0.331 5.331 10 C -0.022 4.022 11 C -0.164 4.164 12 C -0.159 4.159 13 C -0.152 4.152 14 C 0.045 3.955 15 H 0.068 0.932 16 C 0.059 3.941 17 H 0.070 0.930 18 C -0.137 4.137 19 C -0.178 4.178 20 C 0.056 3.944 21 N -0.339 5.339 22 C -0.336 4.336 23 H 0.091 0.909 24 C -0.254 4.254 25 N -0.595 5.595 26 Si 0.787 3.213 27 H -0.191 1.191 28 H -0.225 1.225 29 H -0.219 1.219 30 H 0.129 0.871 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.249 0.751 34 H 0.250 0.750 35 H 0.124 0.876 36 H 0.117 0.883 37 H 0.102 0.898 38 H 0.128 0.872 39 H 0.078 0.922 40 H 0.118 0.882 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.058 0.942 44 H 0.089 0.911 45 H 0.120 0.880 46 H 0.065 0.935 47 H 0.092 0.908 48 H 0.075 0.925 49 H 0.015 0.985 50 H 0.040 0.960 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -20.751 2.576 -5.588 21.644 hybrid contribution 1.745 -0.360 0.965 2.027 sum -19.006 2.216 -4.623 19.685 Atomic orbital electron populations 1.21549 0.76999 1.04065 1.01375 1.44884 1.08470 1.06843 1.79431 1.16035 0.81511 0.84727 0.77712 1.90891 1.68707 1.31845 1.60071 1.44735 1.04396 1.10030 1.79611 1.20902 0.87213 0.86738 1.05019 1.20772 0.88616 0.85327 0.76862 1.90677 1.78470 1.22636 1.50126 1.48212 1.06071 1.07292 1.71478 1.22159 1.00800 0.79655 0.99538 1.21959 0.94620 1.01404 0.98444 1.21607 0.96911 0.95637 1.01752 1.22034 1.01967 0.94528 0.96645 1.21754 0.78786 0.97741 0.97238 0.93245 1.21592 0.85965 0.91474 0.95053 0.93003 1.22780 0.98965 0.96878 0.95090 1.22909 0.97332 0.97886 0.99632 1.21089 0.91662 0.91180 0.90428 1.44994 1.10814 1.57306 1.20795 1.19145 0.90160 1.32154 0.92149 0.90921 1.25586 0.96466 1.02642 1.00719 1.70139 1.00793 1.53357 1.35236 0.85300 0.78243 0.77512 0.80198 1.19110 1.22535 1.21891 0.87097 0.93159 0.93368 0.75119 0.75002 0.87561 0.88316 0.89772 0.87249 0.92183 0.88152 0.92083 0.91987 0.94189 0.91053 0.87992 0.93509 0.90769 0.92529 0.98507 0.95961 0.94635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.26 10.70 127.77 1.37 2.63 16 2 N -0.74 -11.43 5.72 -500.19 -2.86 -14.29 16 3 C 0.70 16.04 8.57 179.05 1.53 17.58 16 4 O -0.63 -19.13 16.34 -3.99 -0.07 -19.19 16 5 N -0.73 -15.35 5.53 -482.31 -2.67 -18.02 16 6 C 0.13 2.71 4.51 85.63 0.39 3.10 16 7 C 0.50 13.18 7.48 87.66 0.66 13.84 16 8 O -0.54 -17.20 8.53 -3.05 -0.03 -17.22 16 9 N -0.60 -16.12 2.97 -794.18 -2.36 -18.48 16 10 C 0.10 1.89 6.38 86.51 0.55 2.44 16 11 C -0.13 -2.53 6.10 30.82 0.19 -2.35 16 12 C -0.12 -3.36 5.88 30.62 0.18 -3.18 16 13 C -0.11 -4.27 3.76 30.67 0.12 -4.16 16 14 C 0.15 5.39 2.77 44.98 0.12 5.51 16 15 H 0.05 1.88 7.63 -2.39 -0.02 1.87 16 16 C 0.16 6.92 2.37 45.34 0.11 7.03 16 17 H 0.05 2.38 5.78 -6.72 -0.04 2.34 16 18 C -0.10 -3.76 5.56 31.78 0.18 -3.58 16 19 C -0.14 -5.59 7.08 31.99 0.23 -5.36 16 20 C 0.18 9.27 5.36 86.86 0.47 9.73 16 21 N -0.61 -31.28 3.03 -668.24 -2.02 -33.30 16 22 C -0.21 -11.21 6.59 84.03 0.55 -10.65 16 23 H 0.07 3.89 6.33 -2.91 -0.02 3.87 16 24 C -0.06 -3.42 5.46 84.86 0.46 -2.95 16 25 N -0.95 -56.78 10.75 21.65 0.23 -56.55 16 26 Si 0.96 45.58 29.55 68.60 2.03 47.60 16 27 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 28 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 29 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 30 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 33 H 0.41 4.13 8.84 -92.71 -0.82 3.31 16 34 H 0.41 8.22 7.45 -92.71 -0.69 7.53 16 35 H 0.11 1.95 7.73 -2.39 -0.02 1.93 16 36 H 0.10 2.00 7.91 -2.39 -0.02 1.99 16 37 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.11 1.48 5.93 -2.39 -0.01 1.47 16 39 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.10 1.44 8.14 -2.39 -0.02 1.43 16 41 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.04 1.62 6.88 -2.39 -0.02 1.61 16 44 H 0.07 3.36 5.81 -2.39 -0.01 3.34 16 45 H 0.10 3.63 5.58 -9.55 -0.05 3.57 16 46 H 0.05 1.71 7.53 -2.39 -0.02 1.69 16 47 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 48 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 49 H 0.00 -0.17 7.96 -2.39 -0.02 -0.19 16 50 H 0.02 1.26 7.23 -2.38 -0.02 1.25 16 51 H 0.24 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -73.45 380.65 -1.26 -74.71 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: -0.62 Total: 25.13 kcal Atomic # 6 Polarization: 22.52 SS G_CDS: 7.10 Total: 29.62 kcal Atomic # 7 Polarization: -130.97 SS G_CDS: -9.67 Total: -140.64 kcal Atomic # 8 Polarization: -36.33 SS G_CDS: -0.09 Total: -36.42 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.60 kcal Total: -73.45 -1.26 -74.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265693202.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.730 kcal (2) G-P(sol) polarization free energy of solvation -73.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds