Wall clock time and date at job start Tue Mar 31 2020 21:02:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46500 * 1
3 3 C 1.34786 * 119.99853 * 2 1
4 4 O 1.21586 * 119.99936 * 0.02562 * 3 2 1
5 5 N 1.34770 * 119.99923 * 180.02562 * 3 2 1
6 6 C 1.46500 * 120.00293 * 180.02562 * 5 3 2
7 7 C 1.50697 * 109.47411 * 180.02562 * 6 5 3
8 8 O 1.21288 * 120.00075 * 359.97438 * 7 6 5
9 9 N 1.34776 * 120.00062 * 179.97438 * 7 6 5
10 10 C 1.46920 * 120.62922 * 354.72704 * 9 7 6
11 11 C 1.53628 * 108.54621 * 126.36933 * 10 9 7
12 12 C 1.53045 * 109.24139 * 54.85416 * 11 10 9
13 13 C 1.53040 * 109.53635 * 298.51250 * 12 11 10
14 14 C 1.46932 * 120.63040 * 175.00526 * 9 7 6
15 15 H 1.08996 * 109.58399 * 113.65358 * 14 9 7
16 16 C 1.53002 * 109.58661 * 353.37326 * 14 9 7
17 17 H 1.09002 * 109.86936 * 320.29974 * 16 14 9
18 18 C 1.54323 * 109.88251 * 81.47524 * 16 14 9
19 19 C 1.55158 * 102.93876 * 141.60987 * 18 16 14
20 20 C 1.54910 * 101.58332 * 324.49997 * 19 18 16
21 21 N 1.47023 * 109.88178 * 199.28938 * 16 14 9
22 22 C 1.36939 * 125.65196 * 61.67236 * 21 16 14
23 23 H 1.08000 * 119.99606 * 18.76922 * 22 21 16
24 24 C 1.38812 * 119.99945 * 198.76200 * 22 21 16
25 25 N 1.31615 * 120.00022 * 0.02562 * 24 22 21
26 26 Si 1.86801 * 119.99703 * 180.02562 * 24 22 21
27 27 H 1.48495 * 109.46957 * 0.02562 * 26 24 22
28 28 H 1.48504 * 109.46939 * 120.00530 * 26 24 22
29 29 H 1.48507 * 109.47134 * 240.00002 * 26 24 22
30 30 H 1.08995 * 109.47087 * 179.97438 * 1 2 3
31 31 H 1.08994 * 109.47324 * 59.99235 * 1 2 3
32 32 H 1.09006 * 109.46533 * 299.99575 * 1 2 3
33 33 H 0.96992 * 120.00169 * 180.02562 * 2 1 3
34 34 H 0.97003 * 119.99907 * 0.02562 * 5 3 2
35 35 H 1.09001 * 109.46669 * 299.99943 * 6 5 3
36 36 H 1.08996 * 109.47085 * 59.99571 * 6 5 3
37 37 H 1.09003 * 109.58714 * 246.19789 * 10 9 7
38 38 H 1.08993 * 109.58861 * 6.62036 * 10 9 7
39 39 H 1.09000 * 109.63190 * 294.86442 * 11 10 9
40 40 H 1.08998 * 109.45694 * 174.73824 * 11 10 9
41 41 H 1.08996 * 109.45753 * 178.49287 * 12 11 10
42 42 H 1.08997 * 109.45878 * 58.53193 * 12 11 10
43 43 H 1.08999 * 109.50271 * 301.41309 * 13 12 11
44 44 H 1.09003 * 109.52563 * 181.33226 * 13 12 11
45 45 H 1.08992 * 110.72133 * 259.97309 * 18 16 14
46 46 H 1.09001 * 110.71737 * 23.24764 * 18 16 14
47 47 H 1.09003 * 111.00583 * 206.42281 * 19 18 16
48 48 H 1.08996 * 111.00546 * 82.57397 * 19 18 16
49 49 H 1.09000 * 110.36641 * 278.17157 * 20 19 18
50 50 H 1.09004 * 110.36614 * 155.85202 * 20 19 18
51 51 H 0.97003 * 119.99691 * 179.97438 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1389 1.1673 0.0000
4 8 1.5309 2.2202 0.0005
5 7 3.4866 1.1673 -0.0005
6 6 4.2191 2.4360 0.0000
7 6 5.7007 2.1607 -0.0013
8 8 6.1051 1.0172 -0.0022
9 7 6.5766 3.1851 -0.0016
10 6 6.1060 4.5721 -0.1168
11 6 6.6846 5.3831 1.0527
12 6 8.2079 5.2353 1.0640
13 6 8.5779 3.7645 1.2686
14 6 8.0204 2.9356 0.1071
15 1 8.5123 3.2261 -0.8212
16 6 8.2654 1.4490 0.3739
17 1 7.5176 1.0694 1.0702
18 6 8.2017 0.6605 -0.9512
19 6 9.3289 -0.3924 -0.7834
20 6 10.3902 0.4115 0.0084
21 7 9.6118 1.2565 0.9322
22 6 10.0671 1.7754 2.1149
23 1 9.3646 2.1174 2.8605
24 6 11.4315 1.8618 2.3553
25 7 12.2876 1.4454 1.4464
26 14 12.0526 2.5691 3.9688
27 1 10.8969 2.9613 4.8148
28 1 12.8609 1.5457 4.6793
29 1 12.8939 3.7619 3.6953
30 1 -0.3633 -1.0276 -0.0005
31 1 -0.3633 0.5139 -0.8898
32 1 -0.3632 0.5138 0.8901
33 1 1.9500 -0.8400 -0.0004
34 1 3.9716 0.3272 -0.0013
35 1 3.9555 3.0081 -0.8895
36 1 3.9561 3.0070 0.8904
37 1 6.4454 4.9958 -1.0620
38 1 5.0171 4.5933 -0.0746
39 1 6.2762 5.0124 1.9929
40 1 6.4219 6.4339 0.9310
41 1 8.6244 5.8309 1.8763
42 1 8.6135 5.5831 0.1140
43 1 8.1517 3.4091 2.2067
44 1 9.6628 3.6627 1.3003
45 1 7.2331 0.1738 -1.0642
46 1 8.4075 1.3140 -1.7990
47 1 9.7185 -0.7055 -1.7521
48 1 8.9798 -1.2503 -0.2088
49 1 10.9789 1.0314 -0.6679
50 1 11.0387 -0.2636 0.5669
51 1 13.2410 1.5062 1.6143
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001265693202.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:02:38
Heat of formation + Delta-G solvation = -24.983018 kcal
Electronic energy + Delta-G solvation = -31860.184041 eV
Core-core repulsion = 27795.742667 eV
Total energy + Delta-G solvation = -4064.441374 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 0.99 seconds
Orbital eigenvalues (eV)
-41.93254 -40.84036 -38.93936 -38.12009 -35.69613 -35.43889 -34.52013 -33.81370
-32.74864 -31.04005 -29.45973 -28.51898 -26.81023 -26.51127 -25.48523 -23.77242
-22.34810 -21.97065 -21.45129 -20.93871 -20.46343 -19.48237 -18.84109 -17.73256
-17.34424 -17.18722 -16.80997 -16.48351 -16.12292 -16.00178 -15.63723 -15.34126
-15.28692 -15.13410 -14.75802 -14.32751 -14.26433 -14.03007 -13.89505 -13.74103
-13.60822 -13.56493 -13.39403 -12.99989 -12.98835 -12.71540 -12.70102 -12.36944
-12.11956 -11.93679 -11.88521 -11.69895 -11.47415 -11.39559 -11.35860 -11.20628
-10.85273 -10.50152 -10.42463 -10.10421 -9.81257 -9.43174 -8.58665 -7.80464
-5.15210 1.43965 1.45811 1.54057 1.55352 1.60706 2.13045 2.17774
2.52895 3.32780 3.38356 3.48295 3.78840 3.95217 4.05484 4.08831
4.17787 4.27034 4.34603 4.37685 4.38009 4.46215 4.49899 4.52402
4.60012 4.70936 4.71440 4.82105 4.90617 4.98082 4.98780 5.01077
5.09839 5.14219 5.22239 5.32884 5.33717 5.39257 5.46284 5.51983
5.57015 5.60811 5.69671 5.77672 5.80883 5.91407 5.98173 6.29796
6.53108 7.04304 7.15836 7.25963 7.54836 7.86079 8.56938 9.31520
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.014472 B = 0.003411 C = 0.003096
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1934.286957 B = 8206.427013 C = 9043.210666
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.104 3.896
2 N -0.741 5.741
3 C 0.701 3.299
4 O -0.633 6.633
5 N -0.729 5.729
6 C 0.129 3.871
7 C 0.495 3.505
8 O -0.540 6.540
9 N -0.597 5.597
10 C 0.100 3.900
11 C -0.126 4.126
12 C -0.121 4.121
13 C -0.113 4.113
14 C 0.150 3.850
15 H 0.050 0.950
16 C 0.165 3.835
17 H 0.053 0.947
18 C -0.100 4.100
19 C -0.139 4.139
20 C 0.182 3.818
21 N -0.614 5.614
22 C -0.207 4.207
23 H 0.073 0.927
24 C -0.061 4.061
25 N -0.946 5.946
26 Si 0.958 3.042
27 H -0.267 1.267
28 H -0.298 1.298
29 H -0.292 1.292
30 H 0.111 0.889
31 H 0.050 0.950
32 H 0.048 0.952
33 H 0.413 0.587
34 H 0.412 0.588
35 H 0.107 0.893
36 H 0.099 0.901
37 H 0.084 0.916
38 H 0.109 0.891
39 H 0.059 0.941
40 H 0.100 0.900
41 H 0.060 0.940
42 H 0.061 0.939
43 H 0.039 0.961
44 H 0.071 0.929
45 H 0.102 0.898
46 H 0.046 0.954
47 H 0.074 0.926
48 H 0.056 0.944
49 H -0.003 1.003
50 H 0.022 0.978
51 H 0.244 0.756
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.574 2.185 -5.696 21.459
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.040 4.040
2 N -0.396 5.396
3 C 0.400 3.600
4 O -0.515 6.515
5 N -0.388 5.388
6 C 0.001 3.999
7 C 0.284 3.716
8 O -0.419 6.419
9 N -0.331 5.331
10 C -0.022 4.022
11 C -0.164 4.164
12 C -0.159 4.159
13 C -0.152 4.152
14 C 0.045 3.955
15 H 0.068 0.932
16 C 0.059 3.941
17 H 0.070 0.930
18 C -0.137 4.137
19 C -0.178 4.178
20 C 0.056 3.944
21 N -0.339 5.339
22 C -0.336 4.336
23 H 0.091 0.909
24 C -0.254 4.254
25 N -0.595 5.595
26 Si 0.787 3.213
27 H -0.191 1.191
28 H -0.225 1.225
29 H -0.219 1.219
30 H 0.129 0.871
31 H 0.068 0.932
32 H 0.066 0.934
33 H 0.249 0.751
34 H 0.250 0.750
35 H 0.124 0.876
36 H 0.117 0.883
37 H 0.102 0.898
38 H 0.128 0.872
39 H 0.078 0.922
40 H 0.118 0.882
41 H 0.079 0.921
42 H 0.080 0.920
43 H 0.058 0.942
44 H 0.089 0.911
45 H 0.120 0.880
46 H 0.065 0.935
47 H 0.092 0.908
48 H 0.075 0.925
49 H 0.015 0.985
50 H 0.040 0.960
51 H 0.054 0.946
Dipole moment (debyes) X Y Z Total
from point charges -20.751 2.576 -5.588 21.644
hybrid contribution 1.745 -0.360 0.965 2.027
sum -19.006 2.216 -4.623 19.685
Atomic orbital electron populations
1.21549 0.76999 1.04065 1.01375 1.44884 1.08470 1.06843 1.79431
1.16035 0.81511 0.84727 0.77712 1.90891 1.68707 1.31845 1.60071
1.44735 1.04396 1.10030 1.79611 1.20902 0.87213 0.86738 1.05019
1.20772 0.88616 0.85327 0.76862 1.90677 1.78470 1.22636 1.50126
1.48212 1.06071 1.07292 1.71478 1.22159 1.00800 0.79655 0.99538
1.21959 0.94620 1.01404 0.98444 1.21607 0.96911 0.95637 1.01752
1.22034 1.01967 0.94528 0.96645 1.21754 0.78786 0.97741 0.97238
0.93245 1.21592 0.85965 0.91474 0.95053 0.93003 1.22780 0.98965
0.96878 0.95090 1.22909 0.97332 0.97886 0.99632 1.21089 0.91662
0.91180 0.90428 1.44994 1.10814 1.57306 1.20795 1.19145 0.90160
1.32154 0.92149 0.90921 1.25586 0.96466 1.02642 1.00719 1.70139
1.00793 1.53357 1.35236 0.85300 0.78243 0.77512 0.80198 1.19110
1.22535 1.21891 0.87097 0.93159 0.93368 0.75119 0.75002 0.87561
0.88316 0.89772 0.87249 0.92183 0.88152 0.92083 0.91987 0.94189
0.91053 0.87992 0.93509 0.90769 0.92529 0.98507 0.95961 0.94635
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.10 1.26 10.70 127.77 1.37 2.63 16
2 N -0.74 -11.43 5.72 -500.19 -2.86 -14.29 16
3 C 0.70 16.04 8.57 179.05 1.53 17.58 16
4 O -0.63 -19.13 16.34 -3.99 -0.07 -19.19 16
5 N -0.73 -15.35 5.53 -482.31 -2.67 -18.02 16
6 C 0.13 2.71 4.51 85.63 0.39 3.10 16
7 C 0.50 13.18 7.48 87.66 0.66 13.84 16
8 O -0.54 -17.20 8.53 -3.05 -0.03 -17.22 16
9 N -0.60 -16.12 2.97 -794.18 -2.36 -18.48 16
10 C 0.10 1.89 6.38 86.51 0.55 2.44 16
11 C -0.13 -2.53 6.10 30.82 0.19 -2.35 16
12 C -0.12 -3.36 5.88 30.62 0.18 -3.18 16
13 C -0.11 -4.27 3.76 30.67 0.12 -4.16 16
14 C 0.15 5.39 2.77 44.98 0.12 5.51 16
15 H 0.05 1.88 7.63 -2.39 -0.02 1.87 16
16 C 0.16 6.92 2.37 45.34 0.11 7.03 16
17 H 0.05 2.38 5.78 -6.72 -0.04 2.34 16
18 C -0.10 -3.76 5.56 31.78 0.18 -3.58 16
19 C -0.14 -5.59 7.08 31.99 0.23 -5.36 16
20 C 0.18 9.27 5.36 86.86 0.47 9.73 16
21 N -0.61 -31.28 3.03 -668.24 -2.02 -33.30 16
22 C -0.21 -11.21 6.59 84.03 0.55 -10.65 16
23 H 0.07 3.89 6.33 -2.91 -0.02 3.87 16
24 C -0.06 -3.42 5.46 84.86 0.46 -2.95 16
25 N -0.95 -56.78 10.75 21.65 0.23 -56.55 16
26 Si 0.96 45.58 29.55 68.60 2.03 47.60 16
27 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16
28 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16
29 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16
30 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16
31 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16
32 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16
33 H 0.41 4.13 8.84 -92.71 -0.82 3.31 16
34 H 0.41 8.22 7.45 -92.71 -0.69 7.53 16
35 H 0.11 1.95 7.73 -2.39 -0.02 1.93 16
36 H 0.10 2.00 7.91 -2.39 -0.02 1.99 16
37 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16
38 H 0.11 1.48 5.93 -2.39 -0.01 1.47 16
39 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16
40 H 0.10 1.44 8.14 -2.39 -0.02 1.43 16
41 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16
42 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16
43 H 0.04 1.62 6.88 -2.39 -0.02 1.61 16
44 H 0.07 3.36 5.81 -2.39 -0.01 3.34 16
45 H 0.10 3.63 5.58 -9.55 -0.05 3.57 16
46 H 0.05 1.71 7.53 -2.39 -0.02 1.69 16
47 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16
48 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16
49 H 0.00 -0.17 7.96 -2.39 -0.02 -0.19 16
50 H 0.02 1.26 7.23 -2.38 -0.02 1.25 16
51 H 0.24 14.35 8.31 -92.71 -0.77 13.58 16
Total: -1.00 -73.45 380.65 -1.26 -74.71
By element:
Atomic # 1 Polarization: 25.75 SS G_CDS: -0.62 Total: 25.13 kcal
Atomic # 6 Polarization: 22.52 SS G_CDS: 7.10 Total: 29.62 kcal
Atomic # 7 Polarization: -130.97 SS G_CDS: -9.67 Total: -140.64 kcal
Atomic # 8 Polarization: -36.33 SS G_CDS: -0.09 Total: -36.42 kcal
Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.60 kcal
Total: -73.45 -1.26 -74.71 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001265693202.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 49.730 kcal
(2) G-P(sol) polarization free energy of solvation -73.451 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.721 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.262 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.713 kcal
(6) G-S(sol) free energy of system = (1) + (5) -24.983 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds