Wall clock time and date at job start Tue Mar 31 2020 20:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.33357 * 117.94272 * 2 1 4 4 O 1.21281 * 118.24905 * 2.25139 * 3 2 1 5 5 C 1.50178 * 123.50799 * 182.22248 * 3 2 1 6 6 C 1.53064 * 109.89028 * 342.42480 * 5 3 2 7 7 C 1.53348 * 108.43061 * 48.89838 * 6 5 3 8 8 C 1.45748 * 117.94910 * 180.02562 * 2 1 3 9 9 H 1.09002 * 109.13148 * 281.12408 * 8 2 1 10 10 C 1.50697 * 109.30360 * 40.60984 * 8 2 1 11 11 O 1.21285 * 119.99695 * 21.03615 * 10 8 2 12 12 N 1.34773 * 120.00196 * 201.31255 * 10 8 2 13 13 C 1.46499 * 120.00164 * 179.72294 * 12 10 8 14 14 C 1.53002 * 109.47214 * 180.02562 * 13 12 10 15 15 N 1.46899 * 109.47058 * 179.97438 * 14 13 12 16 16 C 1.46901 * 111.00098 * 294.30505 * 15 14 13 17 17 C 1.53245 * 109.33999 * 172.74936 * 16 15 14 18 18 N 1.47078 * 108.52140 * 53.82608 * 17 16 15 19 19 C 1.36934 * 120.88280 * 128.84192 * 18 17 16 20 20 H 1.08001 * 120.00319 * 206.61984 * 19 18 17 21 21 C 1.38820 * 119.99934 * 26.61266 * 19 18 17 22 22 N 1.31623 * 119.99623 * 17.05707 * 21 19 18 23 23 Si 1.86796 * 120.00073 * 197.05561 * 21 19 18 24 24 H 1.48501 * 109.47172 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47219 * 120.00216 * 23 21 19 26 26 H 1.48498 * 109.47118 * 240.00093 * 23 21 19 27 27 C 1.47086 * 118.23656 * 308.81432 * 18 17 16 28 28 C 1.46899 * 110.99887 * 169.99687 * 15 14 13 29 29 H 1.09001 * 109.46913 * 269.99558 * 1 2 3 30 30 H 1.08999 * 109.47492 * 29.99692 * 1 2 3 31 31 H 1.09000 * 109.46983 * 149.99959 * 1 2 3 32 32 H 1.08993 * 109.40559 * 222.29348 * 5 3 2 33 33 H 1.09004 * 109.39601 * 102.55121 * 5 3 2 34 34 H 1.09005 * 109.67358 * 289.16244 * 6 5 3 35 35 H 1.09005 * 109.67645 * 168.63316 * 6 5 3 36 36 H 1.09002 * 109.60665 * 172.71452 * 7 6 5 37 37 H 1.09002 * 109.73661 * 52.30326 * 7 6 5 38 38 H 0.97002 * 120.00229 * 359.72505 * 12 10 8 39 39 H 1.08995 * 109.47060 * 300.00293 * 13 12 10 40 40 H 1.09004 * 109.47105 * 60.00084 * 13 12 10 41 41 H 1.08995 * 109.47324 * 300.00105 * 14 13 12 42 42 H 1.08998 * 109.46857 * 60.00404 * 14 13 12 43 43 H 1.09000 * 109.48777 * 292.70341 * 16 15 14 44 44 H 1.08995 * 109.49478 * 52.78435 * 16 15 14 45 45 H 1.09000 * 109.62262 * 294.11937 * 17 16 15 46 46 H 1.08993 * 109.78644 * 173.63366 * 17 16 15 47 47 H 0.96997 * 119.99499 * 179.97438 * 22 21 19 48 48 H 1.08994 * 109.62969 * 291.47452 * 27 18 17 49 49 H 1.09003 * 109.78538 * 170.99527 * 27 18 17 50 50 H 1.08999 * 109.49653 * 307.21613 * 28 15 14 51 51 H 1.09000 * 109.49218 * 67.30185 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.0899 1.1781 0.0000 4 8 1.4158 2.1854 0.0420 5 6 3.5838 1.3242 -0.0486 6 6 4.2492 0.0015 0.3395 7 6 3.5949 -1.1258 -0.4684 8 6 2.1481 -1.2875 -0.0006 9 1 2.1400 -1.6966 1.0097 10 6 1.4278 -2.2332 -0.9267 11 8 0.7038 -1.7964 -1.7962 12 7 1.5838 -3.5644 -0.7853 13 6 0.8788 -4.4839 -1.6818 14 6 1.2265 -5.9265 -1.3091 15 7 0.5191 -6.8485 -2.2076 16 6 -0.9339 -6.7684 -2.0066 17 6 -1.6414 -7.6039 -3.0789 18 7 -1.0842 -8.9648 -3.0538 19 6 -1.9042 -10.0588 -2.9782 20 1 -1.5407 -10.9770 -2.5410 21 6 -3.2030 -9.9876 -3.4633 22 7 -3.5469 -9.0170 -4.2831 23 14 -4.4623 -11.2693 -2.9526 24 1 -3.8283 -12.2468 -2.0319 25 1 -5.5958 -10.6023 -2.2632 26 1 -4.9637 -11.9781 -4.1574 27 6 0.3773 -9.1195 -3.1129 28 6 1.0054 -8.2244 -2.0393 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 3.8942 2.1035 0.6473 33 1 3.8879 1.6000 -1.0583 34 1 4.1088 -0.1812 1.4049 35 1 5.3143 0.0458 0.1116 36 1 4.1385 -2.0563 -0.3045 37 1 3.6102 -0.8752 -1.5291 38 1 2.1629 -3.9137 -0.0899 39 1 -0.1963 -4.3329 -1.5849 40 1 1.1814 -4.2912 -2.7112 41 1 2.3015 -6.0777 -1.4057 42 1 0.9235 -6.1188 -0.2799 43 1 -1.1863 -7.1548 -1.0192 44 1 -1.2551 -5.7297 -2.0841 45 1 -1.4748 -7.1580 -4.0594 46 1 -2.7106 -7.6421 -2.8709 47 1 -4.4543 -8.9675 -4.6223 48 1 0.7379 -8.8193 -4.0967 49 1 0.6462 -10.1592 -2.9260 50 1 2.0905 -8.2416 -2.1406 51 1 0.7259 -8.5906 -1.0515 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266297154.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:42 Heat of formation + Delta-G solvation = -27.661393 kcal Electronic energy + Delta-G solvation = -29866.135596 eV Core-core repulsion = 25801.578079 eV Total energy + Delta-G solvation = -4064.557517 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.36148 -39.61320 -38.30075 -36.66128 -35.64991 -34.42894 -34.00902 -31.64218 -30.69719 -29.99560 -28.80787 -27.41286 -26.20916 -25.14205 -23.33332 -22.75038 -22.64260 -21.47181 -21.06444 -19.17116 -19.09737 -17.87221 -17.14970 -16.84393 -16.81146 -16.14814 -15.66767 -15.56976 -15.00112 -14.82114 -14.65238 -14.53348 -14.40568 -13.99567 -13.86749 -13.77629 -13.52920 -13.47337 -12.99697 -12.76807 -12.63584 -12.56082 -12.12870 -12.05036 -11.74036 -11.56020 -11.50307 -11.48988 -11.29514 -11.10163 -10.78533 -10.49874 -10.42273 -10.33899 -10.09673 -9.95031 -9.79600 -9.67194 -9.30118 -8.97978 -8.54076 -7.96210 -6.70238 -5.80670 -3.22147 2.11891 2.24789 2.54580 2.88846 3.35240 3.43121 3.45054 4.02447 4.04106 4.09569 4.23207 4.34794 4.47544 4.49292 4.62746 4.84688 4.88220 5.05564 5.12184 5.15369 5.21818 5.30900 5.36235 5.37005 5.37397 5.41395 5.45628 5.58149 5.73968 5.79053 5.83859 5.85697 5.94068 5.99354 6.04010 6.12502 6.18696 6.27013 6.48492 6.63288 6.87724 7.01924 7.14471 7.19006 7.46949 7.58135 7.65622 7.78235 7.79266 7.87087 8.40650 9.18394 9.81716 10.39944 11.28170 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.024816 B = 0.001960 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.030170 B =14281.493159 C =15062.115682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.586 5.586 3 C 0.518 3.482 4 O -0.550 6.550 5 C -0.136 4.136 6 C -0.121 4.121 7 C -0.128 4.128 8 C 0.128 3.872 9 H 0.098 0.902 10 C 0.501 3.499 11 O -0.518 6.518 12 N -0.721 5.721 13 C 0.120 3.880 14 C 0.045 3.955 15 N -0.529 5.529 16 C 0.031 3.969 17 C 0.177 3.823 18 N -0.596 5.596 19 C -0.253 4.253 20 H 0.066 0.934 21 C 0.001 3.999 22 N -0.902 5.902 23 Si 0.902 3.098 24 H -0.278 1.278 25 H -0.289 1.289 26 H -0.290 1.290 27 C 0.148 3.852 28 C 0.047 3.953 29 H 0.050 0.950 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.400 0.600 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.032 0.968 43 H 0.026 0.974 44 H 0.064 0.936 45 H 0.027 0.973 46 H 0.089 0.911 47 H 0.254 0.746 48 H 0.026 0.974 49 H 0.056 0.944 50 H 0.062 0.938 51 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.308 15.229 12.277 26.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.319 5.319 3 C 0.307 3.693 4 O -0.428 6.428 5 C -0.176 4.176 6 C -0.158 4.158 7 C -0.166 4.166 8 C 0.020 3.980 9 H 0.115 0.885 10 C 0.286 3.714 11 O -0.394 6.394 12 N -0.374 5.374 13 C -0.003 4.003 14 C -0.084 4.084 15 N -0.255 5.255 16 C -0.098 4.098 17 C 0.051 3.949 18 N -0.319 5.319 19 C -0.382 4.382 20 H 0.084 0.916 21 C -0.198 4.198 22 N -0.547 5.547 23 Si 0.732 3.268 24 H -0.203 1.203 25 H -0.216 1.216 26 H -0.217 1.217 27 C 0.021 3.979 28 C -0.083 4.083 29 H 0.069 0.931 30 H 0.098 0.902 31 H 0.111 0.889 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.112 0.888 37 H 0.101 0.899 38 H 0.234 0.766 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.092 0.908 42 H 0.051 0.949 43 H 0.044 0.956 44 H 0.082 0.918 45 H 0.045 0.955 46 H 0.107 0.893 47 H 0.064 0.936 48 H 0.044 0.956 49 H 0.075 0.925 50 H 0.080 0.920 51 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 17.349 16.205 11.086 26.201 hybrid contribution -0.621 -1.189 1.365 1.914 sum 16.729 15.016 12.451 25.697 Atomic orbital electron populations 1.22059 0.78644 1.05561 1.01561 1.46902 1.07962 1.04423 1.72617 1.20155 0.90964 0.82413 0.75809 1.90729 1.66558 1.35372 1.50184 1.21692 0.90954 0.99756 1.05169 1.21658 1.00586 0.93038 1.00563 1.21882 0.91866 1.01068 1.01803 1.20925 0.93271 0.84309 0.99475 0.88459 1.20661 0.82408 0.82981 0.85395 1.90746 1.37729 1.76796 1.34119 1.45952 1.49237 1.05726 1.36468 1.21446 0.97257 0.87545 0.94097 1.22191 0.99318 0.91856 0.95035 1.61874 1.05557 1.06624 1.51416 1.23002 0.86469 1.00227 1.00062 1.20869 0.97671 0.82709 0.93648 1.44134 0.99628 1.02378 1.85748 1.19224 0.93745 0.92475 1.32777 0.91586 1.25044 0.99274 0.98273 0.97199 1.70038 1.18500 1.34080 1.32037 0.86227 0.81643 0.80960 0.77962 1.20328 1.21565 1.21697 1.20972 0.85857 0.96033 0.95009 1.22627 0.98166 0.88145 0.99344 0.93117 0.90204 0.88904 0.87921 0.88010 0.90667 0.89708 0.88821 0.89929 0.76625 0.90862 0.90208 0.90809 0.94945 0.95561 0.91810 0.95466 0.89256 0.93609 0.95618 0.92531 0.91953 0.95316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.72 9.59 59.85 0.57 1.29 16 2 N -0.59 -5.88 2.96 -176.51 -0.52 -6.40 16 3 C 0.52 5.58 7.47 -11.87 -0.09 5.49 16 4 O -0.55 -8.21 16.21 5.56 0.09 -8.12 16 5 C -0.14 -0.85 6.03 -28.10 -0.17 -1.02 16 6 C -0.12 -0.44 6.03 -26.52 -0.16 -0.60 16 7 C -0.13 -0.59 5.29 -26.60 -0.14 -0.73 16 8 C 0.13 0.90 3.14 -69.53 -0.22 0.68 16 9 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 10 C 0.50 4.94 6.22 -10.99 -0.07 4.87 16 11 O -0.52 -7.48 14.10 5.55 0.08 -7.40 16 12 N -0.72 -5.90 5.56 -60.30 -0.33 -6.24 16 13 C 0.12 1.37 5.61 -4.04 -0.02 1.35 16 14 C 0.05 0.52 5.08 -3.82 -0.02 0.51 16 15 N -0.53 -8.63 4.63 -234.32 -1.08 -9.71 16 16 C 0.03 0.58 5.46 -3.70 -0.02 0.56 16 17 C 0.18 4.21 5.42 -3.60 -0.02 4.19 16 18 N -0.60 -14.82 3.04 -172.01 -0.52 -15.35 16 19 C -0.25 -6.87 9.63 -15.06 -0.15 -7.01 16 20 H 0.07 1.76 7.88 -52.49 -0.41 1.35 16 21 C 0.00 0.02 4.93 -17.43 -0.09 -0.07 16 22 N -0.90 -26.12 11.15 55.49 0.62 -25.50 16 23 Si 0.90 21.52 29.59 -169.99 -5.03 16.49 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 C 0.15 3.04 6.69 -3.60 -0.02 3.02 16 28 C 0.05 0.77 5.62 -3.70 -0.02 0.75 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.08 1.02 7.20 -51.93 -0.37 0.65 16 31 H 0.09 1.13 5.01 -51.93 -0.26 0.87 16 32 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.23 8.13 -51.93 -0.42 -0.20 16 35 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 36 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 37 H 0.08 0.51 8.10 -51.93 -0.42 0.08 16 38 H 0.40 1.92 8.47 -40.82 -0.35 1.57 16 39 H 0.07 0.98 6.40 -51.93 -0.33 0.65 16 40 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 41 H 0.07 0.72 7.97 -51.93 -0.41 0.31 16 42 H 0.03 0.37 8.12 -51.93 -0.42 -0.06 16 43 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.06 1.09 6.16 -51.93 -0.32 0.77 16 45 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.09 2.37 6.11 -51.93 -0.32 2.05 16 47 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 48 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.06 1.11 7.96 -51.93 -0.41 0.70 16 50 H 0.06 0.86 7.99 -51.93 -0.41 0.44 16 51 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 394.15 15.07 5.94 5.94 Total: -1.00 -35.07 394.15 -10.05 -45.12 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -8.66 Total: -2.11 kcal Atomic # 6 Polarization: 13.90 SS G_CDS: -0.63 Total: 13.27 kcal Atomic # 7 Polarization: -61.36 SS G_CDS: -1.85 Total: -63.20 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: 0.17 Total: -15.51 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.07 -10.05 -45.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266297154.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.463 kcal (2) G-P(sol) polarization free energy of solvation -35.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds