Wall clock time and date at job start Tue Mar 31 2020 20:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.33357 * 117.94272 * 2 1 4 4 O 1.21281 * 118.24905 * 2.25139 * 3 2 1 5 5 C 1.50178 * 123.50799 * 182.22248 * 3 2 1 6 6 C 1.53064 * 109.89028 * 342.42480 * 5 3 2 7 7 C 1.53348 * 108.43061 * 48.89838 * 6 5 3 8 8 C 1.45748 * 117.94910 * 180.02562 * 2 1 3 9 9 H 1.09002 * 109.13148 * 281.12408 * 8 2 1 10 10 C 1.50697 * 109.30360 * 40.60984 * 8 2 1 11 11 O 1.21285 * 119.99695 * 21.03615 * 10 8 2 12 12 N 1.34773 * 120.00196 * 201.31255 * 10 8 2 13 13 C 1.46499 * 120.00164 * 179.72294 * 12 10 8 14 14 C 1.53002 * 109.47214 * 180.02562 * 13 12 10 15 15 N 1.46899 * 109.47058 * 179.97438 * 14 13 12 16 16 C 1.46901 * 111.00098 * 294.30505 * 15 14 13 17 17 C 1.53245 * 109.33999 * 172.74936 * 16 15 14 18 18 N 1.47078 * 108.52140 * 53.82608 * 17 16 15 19 19 C 1.36934 * 120.88280 * 128.84192 * 18 17 16 20 20 H 1.08001 * 120.00319 * 206.61984 * 19 18 17 21 21 C 1.38820 * 119.99934 * 26.61266 * 19 18 17 22 22 N 1.31623 * 119.99623 * 17.05707 * 21 19 18 23 23 Si 1.86796 * 120.00073 * 197.05561 * 21 19 18 24 24 H 1.48501 * 109.47172 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47219 * 120.00216 * 23 21 19 26 26 H 1.48498 * 109.47118 * 240.00093 * 23 21 19 27 27 C 1.47086 * 118.23656 * 308.81432 * 18 17 16 28 28 C 1.46899 * 110.99887 * 169.99687 * 15 14 13 29 29 H 1.09001 * 109.46913 * 269.99558 * 1 2 3 30 30 H 1.08999 * 109.47492 * 29.99692 * 1 2 3 31 31 H 1.09000 * 109.46983 * 149.99959 * 1 2 3 32 32 H 1.08993 * 109.40559 * 222.29348 * 5 3 2 33 33 H 1.09004 * 109.39601 * 102.55121 * 5 3 2 34 34 H 1.09005 * 109.67358 * 289.16244 * 6 5 3 35 35 H 1.09005 * 109.67645 * 168.63316 * 6 5 3 36 36 H 1.09002 * 109.60665 * 172.71452 * 7 6 5 37 37 H 1.09002 * 109.73661 * 52.30326 * 7 6 5 38 38 H 0.97002 * 120.00229 * 359.72505 * 12 10 8 39 39 H 1.08995 * 109.47060 * 300.00293 * 13 12 10 40 40 H 1.09004 * 109.47105 * 60.00084 * 13 12 10 41 41 H 1.08995 * 109.47324 * 300.00105 * 14 13 12 42 42 H 1.08998 * 109.46857 * 60.00404 * 14 13 12 43 43 H 1.09000 * 109.48777 * 292.70341 * 16 15 14 44 44 H 1.08995 * 109.49478 * 52.78435 * 16 15 14 45 45 H 1.09000 * 109.62262 * 294.11937 * 17 16 15 46 46 H 1.08993 * 109.78644 * 173.63366 * 17 16 15 47 47 H 0.96997 * 119.99499 * 179.97438 * 22 21 19 48 48 H 1.08994 * 109.62969 * 291.47452 * 27 18 17 49 49 H 1.09003 * 109.78538 * 170.99527 * 27 18 17 50 50 H 1.08999 * 109.49653 * 307.21613 * 28 15 14 51 51 H 1.09000 * 109.49218 * 67.30185 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.0899 1.1781 0.0000 4 8 1.4158 2.1854 0.0420 5 6 3.5838 1.3242 -0.0486 6 6 4.2492 0.0015 0.3395 7 6 3.5949 -1.1258 -0.4684 8 6 2.1481 -1.2875 -0.0006 9 1 2.1400 -1.6966 1.0097 10 6 1.4278 -2.2332 -0.9267 11 8 0.7038 -1.7964 -1.7962 12 7 1.5838 -3.5644 -0.7853 13 6 0.8788 -4.4839 -1.6818 14 6 1.2265 -5.9265 -1.3091 15 7 0.5191 -6.8485 -2.2076 16 6 -0.9339 -6.7684 -2.0066 17 6 -1.6414 -7.6039 -3.0789 18 7 -1.0842 -8.9648 -3.0538 19 6 -1.9042 -10.0588 -2.9782 20 1 -1.5407 -10.9770 -2.5410 21 6 -3.2030 -9.9876 -3.4633 22 7 -3.5469 -9.0170 -4.2831 23 14 -4.4623 -11.2693 -2.9526 24 1 -3.8283 -12.2468 -2.0319 25 1 -5.5958 -10.6023 -2.2632 26 1 -4.9637 -11.9781 -4.1574 27 6 0.3773 -9.1195 -3.1129 28 6 1.0054 -8.2244 -2.0393 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 3.8942 2.1035 0.6473 33 1 3.8879 1.6000 -1.0583 34 1 4.1088 -0.1812 1.4049 35 1 5.3143 0.0458 0.1116 36 1 4.1385 -2.0563 -0.3045 37 1 3.6102 -0.8752 -1.5291 38 1 2.1629 -3.9137 -0.0899 39 1 -0.1963 -4.3329 -1.5849 40 1 1.1814 -4.2912 -2.7112 41 1 2.3015 -6.0777 -1.4057 42 1 0.9235 -6.1188 -0.2799 43 1 -1.1863 -7.1548 -1.0192 44 1 -1.2551 -5.7297 -2.0841 45 1 -1.4748 -7.1580 -4.0594 46 1 -2.7106 -7.6421 -2.8709 47 1 -4.4543 -8.9675 -4.6223 48 1 0.7379 -8.8193 -4.0967 49 1 0.6462 -10.1592 -2.9260 50 1 2.0905 -8.2416 -2.1406 51 1 0.7259 -8.5906 -1.0515 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266297154.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:41 Heat of formation + Delta-G solvation = -54.906377 kcal Electronic energy + Delta-G solvation = -29867.317027 eV Core-core repulsion = 25801.578079 eV Total energy + Delta-G solvation = -4065.738948 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.09798 -40.49109 -39.70114 -37.43835 -36.84504 -35.58752 -34.89227 -33.33696 -31.65178 -31.56563 -29.95283 -28.19330 -27.65269 -26.01808 -24.88115 -24.25401 -23.25605 -22.65717 -21.88881 -20.82525 -19.70201 -18.80173 -18.55821 -17.85688 -17.58903 -17.19167 -16.74615 -16.58247 -16.37257 -15.92888 -15.80660 -15.41856 -15.30229 -15.24339 -15.16651 -14.92260 -14.79680 -14.46754 -14.36562 -14.10858 -13.52142 -13.23825 -13.21531 -13.02225 -12.87412 -12.81890 -12.66580 -12.64364 -12.44549 -12.20110 -12.02736 -11.97477 -11.85420 -11.82779 -11.55175 -11.43375 -11.25943 -10.71485 -10.60669 -10.17975 -9.79416 -9.28596 -8.69155 -7.88572 -5.33302 1.36204 1.45130 1.46683 1.46944 1.57385 1.81580 2.12977 2.49936 3.06058 3.27109 3.46665 3.58276 3.65767 3.68052 3.86009 3.87994 4.04145 4.09924 4.21741 4.30682 4.33364 4.35878 4.48754 4.52462 4.55492 4.56742 4.66128 4.72250 4.78757 4.81984 4.85679 4.86770 4.94597 4.96372 5.01411 5.05028 5.06014 5.21384 5.23617 5.30995 5.33966 5.37963 5.60894 5.67843 6.14460 6.25294 6.30232 6.36593 6.48401 7.02935 7.12176 7.15829 7.83630 8.37355 9.18337 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.024816 B = 0.001960 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.030170 B =14281.493159 C =15062.115682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.589 5.589 3 C 0.507 3.493 4 O -0.605 6.605 5 C -0.132 4.132 6 C -0.111 4.111 7 C -0.126 4.126 8 C 0.129 3.871 9 H 0.136 0.864 10 C 0.500 3.500 11 O -0.572 6.572 12 N -0.701 5.701 13 C 0.129 3.871 14 C 0.054 3.946 15 N -0.544 5.544 16 C 0.051 3.949 17 C 0.184 3.816 18 N -0.615 5.615 19 C -0.260 4.260 20 H 0.071 0.929 21 C -0.056 4.056 22 N -0.938 5.938 23 Si 0.968 3.032 24 H -0.264 1.264 25 H -0.291 1.291 26 H -0.294 1.294 27 C 0.140 3.860 28 C 0.059 3.941 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.082 0.918 32 H 0.112 0.888 33 H 0.106 0.894 34 H 0.090 0.910 35 H 0.111 0.889 36 H 0.129 0.871 37 H 0.064 0.936 38 H 0.422 0.578 39 H 0.048 0.952 40 H 0.060 0.940 41 H 0.107 0.893 42 H 0.049 0.951 43 H 0.024 0.976 44 H 0.074 0.926 45 H -0.006 1.006 46 H 0.054 0.946 47 H 0.249 0.751 48 H 0.014 0.986 49 H 0.063 0.937 50 H 0.103 0.897 51 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.930 14.310 15.029 30.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.321 5.321 3 C 0.298 3.702 4 O -0.487 6.487 5 C -0.172 4.172 6 C -0.148 4.148 7 C -0.164 4.164 8 C 0.022 3.978 9 H 0.153 0.847 10 C 0.286 3.714 11 O -0.452 6.452 12 N -0.355 5.355 13 C 0.005 3.995 14 C -0.074 4.074 15 N -0.270 5.270 16 C -0.078 4.078 17 C 0.057 3.943 18 N -0.339 5.339 19 C -0.390 4.390 20 H 0.088 0.912 21 C -0.251 4.251 22 N -0.584 5.584 23 Si 0.797 3.203 24 H -0.188 1.188 25 H -0.218 1.218 26 H -0.221 1.221 27 C 0.015 3.985 28 C -0.070 4.070 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.101 0.899 32 H 0.130 0.870 33 H 0.124 0.876 34 H 0.108 0.892 35 H 0.130 0.870 36 H 0.147 0.853 37 H 0.083 0.917 38 H 0.260 0.740 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.125 0.875 42 H 0.067 0.933 43 H 0.042 0.958 44 H 0.093 0.907 45 H 0.012 0.988 46 H 0.072 0.928 47 H 0.058 0.942 48 H 0.032 0.968 49 H 0.081 0.919 50 H 0.121 0.879 51 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 21.061 15.234 13.889 29.471 hybrid contribution -1.701 -0.909 0.449 1.981 sum 19.359 14.325 14.338 28.028 Atomic orbital electron populations 1.21897 0.80193 1.03691 1.01795 1.47075 1.07438 1.05735 1.71805 1.21100 0.92850 0.81711 0.74540 1.90698 1.68097 1.37160 1.52709 1.21766 0.87453 1.02112 1.05849 1.21678 1.01491 0.90471 1.01154 1.21988 0.90227 1.03284 1.00856 1.21280 0.93886 0.82068 1.00565 0.84671 1.21245 0.81614 0.83574 0.84954 1.90741 1.40157 1.77721 1.36532 1.45670 1.48773 1.04798 1.36214 1.21127 0.96164 0.88384 0.93856 1.22206 1.00456 0.90085 0.94637 1.61738 1.04049 1.07514 1.53653 1.22581 0.88206 0.99510 0.97516 1.20603 0.96539 0.83384 0.93724 1.44430 1.01467 1.02072 1.85940 1.19588 0.94375 0.93227 1.31844 0.91158 1.25839 1.01200 1.00469 0.97578 1.70208 1.18468 1.36140 1.33595 0.85187 0.78997 0.78728 0.77420 1.18804 1.21783 1.22068 1.21181 0.83535 0.97741 0.96091 1.22460 0.99947 0.87204 0.97368 0.91783 0.92843 0.89926 0.86975 0.87572 0.89157 0.87020 0.85271 0.91718 0.73989 0.93345 0.92198 0.87474 0.93318 0.95791 0.90733 0.98807 0.92774 0.94172 0.96816 0.91881 0.87863 0.95245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.57 9.59 127.77 1.23 2.80 16 2 N -0.59 -11.39 2.96 -831.55 -2.46 -13.85 16 3 C 0.51 10.77 7.47 87.71 0.66 11.42 16 4 O -0.60 -18.83 16.21 -3.03 -0.05 -18.88 16 5 C -0.13 -1.37 6.03 29.71 0.18 -1.19 16 6 C -0.11 -0.31 6.03 30.73 0.19 -0.13 16 7 C -0.13 -0.65 5.29 30.68 0.16 -0.49 16 8 C 0.13 1.43 3.14 44.36 0.14 1.57 16 9 H 0.14 0.56 8.14 -2.39 -0.02 0.54 16 10 C 0.50 9.01 6.22 87.66 0.54 9.55 16 11 O -0.57 -16.81 14.10 -3.05 -0.04 -16.85 16 12 N -0.70 -9.30 5.56 -463.06 -2.57 -11.87 16 13 C 0.13 2.72 5.61 86.38 0.48 3.20 16 14 C 0.05 1.05 5.08 86.30 0.44 1.49 16 15 N -0.54 -16.55 4.63 -895.26 -4.14 -20.69 16 16 C 0.05 1.90 5.46 86.38 0.47 2.37 16 17 C 0.18 9.07 5.42 86.35 0.47 9.54 16 18 N -0.61 -31.05 3.04 -698.11 -2.12 -33.17 16 19 C -0.26 -14.31 9.63 84.04 0.81 -13.50 16 20 H 0.07 3.72 7.88 -2.91 -0.02 3.70 16 21 C -0.06 -3.15 4.93 84.86 0.42 -2.73 16 22 N -0.94 -56.51 11.15 21.65 0.24 -56.27 16 23 Si 0.97 45.00 29.59 68.60 2.03 47.03 16 24 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 25 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 26 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 27 C 0.14 5.63 6.69 86.35 0.58 6.20 16 28 C 0.06 1.77 5.62 86.38 0.49 2.26 16 29 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.05 1.51 7.20 -2.39 -0.02 1.49 16 31 H 0.08 2.12 5.01 -2.39 -0.01 2.11 16 32 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.11 1.02 8.14 -2.39 -0.02 1.01 16 34 H 0.09 0.06 8.13 -2.38 -0.02 0.04 16 35 H 0.11 -0.16 8.14 -2.38 -0.02 -0.18 16 36 H 0.13 -0.18 8.14 -2.39 -0.02 -0.20 16 37 H 0.06 0.62 8.10 -2.39 -0.02 0.60 16 38 H 0.42 1.90 8.47 -92.71 -0.79 1.12 16 39 H 0.05 1.28 6.40 -2.39 -0.02 1.26 16 40 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 41 H 0.11 1.46 7.97 -2.39 -0.02 1.44 16 42 H 0.05 0.85 8.12 -2.39 -0.02 0.84 16 43 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.07 2.59 6.16 -2.39 -0.01 2.57 16 45 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 46 H 0.05 3.02 6.11 -2.39 -0.01 3.01 16 47 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 48 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 49 H 0.06 2.40 7.96 -2.39 -0.02 2.38 16 50 H 0.10 2.31 7.99 -2.39 -0.02 2.29 16 51 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -83.57 394.15 -1.74 -85.31 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: 0.14 Total: 6.87 kcal Atomic # 6 Polarization: 25.12 SS G_CDS: 7.24 Total: 32.36 kcal Atomic # 7 Polarization: -124.80 SS G_CDS: -11.06 Total: -135.85 kcal Atomic # 8 Polarization: -35.64 SS G_CDS: -0.09 Total: -35.73 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -83.57 -1.74 -85.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266297154.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.404 kcal (2) G-P(sol) polarization free energy of solvation -83.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds