Wall clock time and date at job start Tue Mar 31 2020 20:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.33089 * 117.74204 * 2 1 4 4 O 1.21285 * 118.33184 * 357.76861 * 3 2 1 5 5 C 1.50172 * 123.42533 * 177.61118 * 3 2 1 6 6 C 1.53077 * 109.88898 * 17.76509 * 5 3 2 7 7 C 1.53341 * 108.42483 * 311.09683 * 6 5 3 8 8 C 1.45753 * 117.94757 * 180.20197 * 2 1 3 9 9 H 1.08993 * 109.29945 * 78.97259 * 8 2 1 10 10 C 1.50703 * 109.29899 * 319.38734 * 8 2 1 11 11 O 1.21276 * 120.00332 * 339.58295 * 10 8 2 12 12 N 1.34778 * 119.99252 * 159.58158 * 10 8 2 13 13 C 1.46511 * 119.99594 * 179.97438 * 12 10 8 14 14 C 1.52999 * 109.47121 * 180.02562 * 13 12 10 15 15 N 1.46895 * 109.47276 * 180.02562 * 14 13 12 16 16 C 1.46896 * 110.99994 * 294.30422 * 15 14 13 17 17 C 1.53242 * 109.33915 * 172.74621 * 16 15 14 18 18 N 1.47074 * 108.52472 * 53.82406 * 17 16 15 19 19 C 1.36940 * 120.88099 * 128.78916 * 18 17 16 20 20 H 1.08002 * 120.00279 * 206.60469 * 19 18 17 21 21 C 1.38812 * 119.99445 * 26.60929 * 19 18 17 22 22 N 1.31620 * 120.00523 * 16.99975 * 21 19 18 23 23 Si 1.86806 * 119.99617 * 196.99564 * 21 19 18 24 24 H 1.48504 * 109.46841 * 90.00429 * 23 21 19 25 25 H 1.48502 * 109.47071 * 209.99912 * 23 21 19 26 26 H 1.48499 * 109.47488 * 330.00452 * 23 21 19 27 27 C 1.47081 * 118.23892 * 308.81963 * 18 17 16 28 28 C 1.46901 * 111.00312 * 169.99693 * 15 14 13 29 29 H 1.09001 * 109.46820 * 269.79436 * 1 2 3 30 30 H 1.08996 * 109.47074 * 29.79480 * 1 2 3 31 31 H 1.08997 * 109.46529 * 149.79842 * 1 2 3 32 32 H 1.08994 * 109.40528 * 257.63552 * 5 3 2 33 33 H 1.09007 * 109.40385 * 137.89047 * 5 3 2 34 34 H 1.09004 * 109.66967 * 191.36213 * 6 5 3 35 35 H 1.08995 * 109.67426 * 70.83958 * 6 5 3 36 36 H 1.08996 * 109.60812 * 307.77813 * 7 6 5 37 37 H 1.08996 * 109.73589 * 187.36475 * 7 6 5 38 38 H 0.96996 * 120.00554 * 0.02562 * 12 10 8 39 39 H 1.09002 * 109.46810 * 60.00277 * 13 12 10 40 40 H 1.08994 * 109.47199 * 300.00202 * 13 12 10 41 41 H 1.08997 * 109.47302 * 59.99848 * 14 13 12 42 42 H 1.09003 * 109.46834 * 300.00595 * 14 13 12 43 43 H 1.08993 * 109.49398 * 292.70294 * 16 15 14 44 44 H 1.09000 * 109.49317 * 52.78584 * 16 15 14 45 45 H 1.09010 * 109.62708 * 294.11628 * 17 16 15 46 46 H 1.09001 * 109.62658 * 173.54168 * 17 16 15 47 47 H 0.97000 * 119.99781 * 180.02562 * 22 21 19 48 48 H 1.08995 * 109.62622 * 291.47015 * 27 18 17 49 49 H 1.09003 * 109.62424 * 170.88841 * 27 18 17 50 50 H 1.09004 * 109.49173 * 307.21833 * 28 15 14 51 51 H 1.08999 * 109.48630 * 67.29594 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.0846 1.1779 0.0000 4 8 1.4084 2.1839 -0.0416 5 6 3.5780 1.3271 0.0522 6 6 4.2472 0.0066 -0.3370 7 6 3.5936 -1.1236 0.4673 8 6 2.1482 -1.2875 -0.0045 9 1 2.1432 -1.6944 -1.0157 10 6 1.4278 -2.2368 0.9180 11 8 0.6951 -1.8039 1.7820 12 7 1.5979 -3.5670 0.7827 13 6 0.8980 -4.4899 1.6799 14 6 1.2629 -5.9304 1.3155 15 7 0.5607 -6.8557 2.2147 16 6 1.0338 -6.7068 3.5974 17 6 0.1573 -7.5526 4.5274 18 7 0.1371 -8.9337 4.0223 19 6 0.4205 -9.9884 4.8484 20 1 0.8209 -10.9036 4.4379 21 6 0.1929 -9.8813 6.2136 22 7 -0.5879 -8.9289 6.6780 23 14 0.9949 -11.0890 7.3917 24 1 2.3139 -10.5592 7.8217 25 1 0.1242 -11.2732 8.5805 26 1 1.1843 -12.3944 6.7096 27 6 -0.1949 -9.1520 2.6062 28 6 0.6954 -8.2434 1.7518 29 1 -0.3633 -0.0037 1.0277 30 1 -0.3633 0.8918 -0.5106 31 1 -0.3632 -0.8882 -0.5170 32 1 3.8794 1.6016 1.0631 33 1 3.8884 2.1086 -0.6415 34 1 5.3117 0.0528 -0.1067 35 1 4.1096 -0.1744 -1.4030 36 1 3.6058 -0.8722 1.5278 37 1 4.1387 -2.0534 0.3055 38 1 2.1842 -3.9132 0.0919 39 1 -0.1781 -4.3502 1.5773 40 1 1.1939 -4.2899 2.7097 41 1 2.3390 -6.0697 1.4183 42 1 0.9674 -6.1305 0.2856 43 1 2.0680 -7.0439 3.6663 44 1 0.9717 -5.6593 3.8922 45 1 -0.8565 -7.1522 4.5394 46 1 0.5720 -7.5373 5.5354 47 1 -0.7466 -8.8539 7.6319 48 1 -1.2425 -8.9055 2.4335 49 1 -0.0130 -10.1943 2.3440 50 1 0.3881 -8.3102 0.7081 51 1 1.7344 -8.5590 1.8464 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266297156.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:46 Heat of formation + Delta-G solvation = -31.560629 kcal Electronic energy + Delta-G solvation = -29870.070496 eV Core-core repulsion = 25805.343896 eV Total energy + Delta-G solvation = -4064.726601 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.33627 -39.59010 -38.29099 -36.66131 -35.60792 -34.44567 -34.00535 -31.63679 -30.69487 -29.99335 -28.79713 -27.43038 -26.20724 -25.14510 -23.32728 -22.74946 -22.63896 -21.46468 -21.03808 -19.16501 -19.10857 -17.85997 -17.12633 -16.85885 -16.79801 -16.02374 -15.77372 -15.53737 -14.96492 -14.87771 -14.64914 -14.44161 -14.24800 -14.09487 -13.91583 -13.63394 -13.50809 -13.46502 -12.97301 -12.80845 -12.64938 -12.47779 -12.33157 -12.02164 -11.73132 -11.58074 -11.48961 -11.47845 -11.36445 -11.09192 -10.78384 -10.50534 -10.45179 -10.34618 -10.09316 -9.94389 -9.79134 -9.66914 -9.28901 -8.97379 -8.53708 -7.95802 -6.70337 -5.80337 -3.22096 2.16811 2.25277 2.54647 2.89615 3.35872 3.42707 3.44253 4.03021 4.04359 4.09991 4.23574 4.35409 4.47755 4.50064 4.62777 4.85380 4.88296 5.07032 5.08471 5.15473 5.17849 5.31577 5.35016 5.36364 5.37764 5.42112 5.47760 5.58933 5.74766 5.79706 5.84243 5.86853 5.94592 5.97294 6.04455 6.13146 6.19739 6.27341 6.49014 6.63485 6.87931 7.01732 7.16269 7.19622 7.47559 7.58477 7.65426 7.78233 7.80056 7.89824 8.40827 9.18587 9.81853 10.40075 11.28437 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.023381 B = 0.001933 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.281709 B =14483.875065 C =14630.690708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.587 5.587 3 C 0.519 3.481 4 O -0.552 6.552 5 C -0.137 4.137 6 C -0.121 4.121 7 C -0.129 4.129 8 C 0.129 3.871 9 H 0.098 0.902 10 C 0.501 3.499 11 O -0.519 6.519 12 N -0.723 5.723 13 C 0.121 3.879 14 C 0.045 3.955 15 N -0.529 5.529 16 C 0.031 3.969 17 C 0.177 3.823 18 N -0.596 5.596 19 C -0.253 4.253 20 H 0.066 0.934 21 C 0.001 3.999 22 N -0.902 5.902 23 Si 0.903 3.097 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.279 1.279 27 C 0.148 3.852 28 C 0.046 3.954 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.399 0.601 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.032 0.968 42 H 0.073 0.927 43 H 0.026 0.974 44 H 0.064 0.936 45 H 0.027 0.973 46 H 0.089 0.911 47 H 0.254 0.746 48 H 0.026 0.974 49 H 0.056 0.944 50 H 0.062 0.938 51 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.996 15.196 -18.325 26.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.319 5.319 3 C 0.307 3.693 4 O -0.430 6.430 5 C -0.176 4.176 6 C -0.158 4.158 7 C -0.167 4.167 8 C 0.021 3.979 9 H 0.116 0.884 10 C 0.285 3.715 11 O -0.394 6.394 12 N -0.376 5.376 13 C -0.003 4.003 14 C -0.084 4.084 15 N -0.255 5.255 16 C -0.098 4.098 17 C 0.051 3.949 18 N -0.319 5.319 19 C -0.383 4.383 20 H 0.084 0.916 21 C -0.198 4.198 22 N -0.547 5.547 23 Si 0.733 3.267 24 H -0.215 1.215 25 H -0.217 1.217 26 H -0.205 1.205 27 C 0.021 3.979 28 C -0.083 4.083 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.103 0.897 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.112 0.888 38 H 0.233 0.767 39 H 0.097 0.903 40 H 0.091 0.909 41 H 0.050 0.950 42 H 0.092 0.908 43 H 0.044 0.956 44 H 0.082 0.918 45 H 0.046 0.954 46 H 0.107 0.893 47 H 0.064 0.936 48 H 0.044 0.956 49 H 0.075 0.925 50 H 0.080 0.920 51 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 9.545 16.147 -17.514 25.663 hybrid contribution 1.524 -1.170 0.383 1.959 sum 11.069 14.976 -17.132 25.304 Atomic orbital electron populations 1.21805 0.78651 1.02386 1.03541 1.46845 1.07992 1.04522 1.72586 1.20055 0.90994 0.82395 0.75847 1.90731 1.66414 1.35463 1.50390 1.21700 0.91007 0.99749 1.05174 1.21657 1.00595 0.93037 1.00551 1.21891 0.91949 1.01042 1.01832 1.20950 0.93234 0.84174 0.99519 0.88417 1.20663 0.82512 0.82964 0.85380 1.90770 1.37336 1.76963 1.34297 1.45936 1.48996 1.05759 1.36888 1.21430 0.97756 0.87434 0.93639 1.22190 0.96476 0.91884 0.97839 1.61870 1.55926 1.05203 1.02473 1.23005 0.98123 1.00239 0.88403 1.20872 0.96055 0.82293 0.95649 1.44128 1.80427 1.02523 1.04820 1.19195 1.35675 0.94862 0.88555 0.91603 1.25040 0.98171 0.98522 0.98017 1.70028 1.36770 1.34929 1.12942 0.86281 0.78887 0.80753 0.80785 1.21507 1.21714 1.20470 1.20979 0.95504 0.95818 0.85565 1.22629 0.99195 0.88062 0.98404 0.90779 0.90406 0.91883 0.88016 0.87915 0.89722 0.90674 0.89955 0.88838 0.76696 0.90265 0.90909 0.94951 0.90844 0.95581 0.91820 0.95440 0.89292 0.93553 0.95574 0.92523 0.91957 0.95326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.85 8.69 59.85 0.52 1.37 16 2 N -0.59 -5.77 2.95 -176.58 -0.52 -6.30 16 3 C 0.52 5.52 7.46 -11.99 -0.09 5.43 16 4 O -0.55 -8.11 16.16 5.55 0.09 -8.02 16 5 C -0.14 -0.86 6.03 -28.10 -0.17 -1.03 16 6 C -0.12 -0.46 6.03 -26.51 -0.16 -0.62 16 7 C -0.13 -0.63 5.29 -26.59 -0.14 -0.77 16 8 C 0.13 0.90 3.09 -69.52 -0.21 0.69 16 9 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 10 C 0.50 4.99 6.30 -10.98 -0.07 4.92 16 11 O -0.52 -7.58 14.36 5.56 0.08 -7.50 16 12 N -0.72 -6.02 5.56 -60.29 -0.33 -6.35 16 13 C 0.12 1.40 5.61 -4.04 -0.02 1.38 16 14 C 0.05 0.53 5.08 -3.83 -0.02 0.51 16 15 N -0.53 -8.68 4.63 -234.33 -1.08 -9.76 16 16 C 0.03 0.58 5.46 -3.70 -0.02 0.56 16 17 C 0.18 4.23 5.42 -3.60 -0.02 4.21 16 18 N -0.60 -14.85 3.04 -172.01 -0.52 -15.37 16 19 C -0.25 -6.89 9.63 -15.06 -0.15 -7.03 16 20 H 0.07 1.75 7.88 -52.49 -0.41 1.34 16 21 C 0.00 0.03 4.94 -17.43 -0.09 -0.06 16 22 N -0.90 -26.14 11.15 55.49 0.62 -25.52 16 23 Si 0.90 21.52 29.59 -169.99 -5.03 16.49 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 C 0.15 3.05 6.69 -3.60 -0.02 3.02 16 28 C 0.05 0.77 5.62 -3.70 -0.02 0.75 16 29 H 0.07 0.96 6.96 -51.93 -0.36 0.60 16 30 H 0.08 0.86 7.11 -51.93 -0.37 0.50 16 31 H 0.06 0.58 7.75 -51.93 -0.40 0.18 16 32 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 35 H 0.07 0.23 8.13 -51.93 -0.42 -0.19 16 36 H 0.08 0.54 8.10 -51.93 -0.42 0.12 16 37 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.40 1.97 8.47 -40.82 -0.35 1.62 16 39 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.07 0.99 6.40 -51.93 -0.33 0.66 16 41 H 0.03 0.36 8.12 -51.93 -0.42 -0.06 16 42 H 0.07 0.74 7.97 -51.93 -0.41 0.32 16 43 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.06 1.10 6.16 -51.93 -0.32 0.78 16 45 H 0.03 0.71 8.14 -51.92 -0.42 0.29 16 46 H 0.09 2.36 6.12 -51.93 -0.32 2.04 16 47 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 48 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.06 1.12 7.95 -51.93 -0.41 0.70 16 50 H 0.06 0.86 7.99 -51.93 -0.41 0.45 16 51 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 394.93 15.07 5.95 5.95 Total: -1.00 -35.06 394.93 -10.17 -45.22 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -8.73 Total: -2.18 kcal Atomic # 6 Polarization: 14.02 SS G_CDS: -0.68 Total: 13.34 kcal Atomic # 7 Polarization: -61.46 SS G_CDS: -1.84 Total: -63.31 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: 0.17 Total: -15.52 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.06 -10.17 -45.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266297156.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.663 kcal (2) G-P(sol) polarization free energy of solvation -35.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds