Wall clock time and date at job start Tue Mar 31 2020 20:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.33089 * 117.74204 * 2 1 4 4 O 1.21285 * 118.33184 * 357.76861 * 3 2 1 5 5 C 1.50172 * 123.42533 * 177.61118 * 3 2 1 6 6 C 1.53077 * 109.88898 * 17.76509 * 5 3 2 7 7 C 1.53341 * 108.42483 * 311.09683 * 6 5 3 8 8 C 1.45753 * 117.94757 * 180.20197 * 2 1 3 9 9 H 1.08993 * 109.29945 * 78.97259 * 8 2 1 10 10 C 1.50703 * 109.29899 * 319.38734 * 8 2 1 11 11 O 1.21276 * 120.00332 * 339.58295 * 10 8 2 12 12 N 1.34778 * 119.99252 * 159.58158 * 10 8 2 13 13 C 1.46511 * 119.99594 * 179.97438 * 12 10 8 14 14 C 1.52999 * 109.47121 * 180.02562 * 13 12 10 15 15 N 1.46895 * 109.47276 * 180.02562 * 14 13 12 16 16 C 1.46896 * 110.99994 * 294.30422 * 15 14 13 17 17 C 1.53242 * 109.33915 * 172.74621 * 16 15 14 18 18 N 1.47074 * 108.52472 * 53.82406 * 17 16 15 19 19 C 1.36940 * 120.88099 * 128.78916 * 18 17 16 20 20 H 1.08002 * 120.00279 * 206.60469 * 19 18 17 21 21 C 1.38812 * 119.99445 * 26.60929 * 19 18 17 22 22 N 1.31620 * 120.00523 * 16.99975 * 21 19 18 23 23 Si 1.86806 * 119.99617 * 196.99564 * 21 19 18 24 24 H 1.48504 * 109.46841 * 90.00429 * 23 21 19 25 25 H 1.48502 * 109.47071 * 209.99912 * 23 21 19 26 26 H 1.48499 * 109.47488 * 330.00452 * 23 21 19 27 27 C 1.47081 * 118.23892 * 308.81963 * 18 17 16 28 28 C 1.46901 * 111.00312 * 169.99693 * 15 14 13 29 29 H 1.09001 * 109.46820 * 269.79436 * 1 2 3 30 30 H 1.08996 * 109.47074 * 29.79480 * 1 2 3 31 31 H 1.08997 * 109.46529 * 149.79842 * 1 2 3 32 32 H 1.08994 * 109.40528 * 257.63552 * 5 3 2 33 33 H 1.09007 * 109.40385 * 137.89047 * 5 3 2 34 34 H 1.09004 * 109.66967 * 191.36213 * 6 5 3 35 35 H 1.08995 * 109.67426 * 70.83958 * 6 5 3 36 36 H 1.08996 * 109.60812 * 307.77813 * 7 6 5 37 37 H 1.08996 * 109.73589 * 187.36475 * 7 6 5 38 38 H 0.96996 * 120.00554 * 0.02562 * 12 10 8 39 39 H 1.09002 * 109.46810 * 60.00277 * 13 12 10 40 40 H 1.08994 * 109.47199 * 300.00202 * 13 12 10 41 41 H 1.08997 * 109.47302 * 59.99848 * 14 13 12 42 42 H 1.09003 * 109.46834 * 300.00595 * 14 13 12 43 43 H 1.08993 * 109.49398 * 292.70294 * 16 15 14 44 44 H 1.09000 * 109.49317 * 52.78584 * 16 15 14 45 45 H 1.09010 * 109.62708 * 294.11628 * 17 16 15 46 46 H 1.09001 * 109.62658 * 173.54168 * 17 16 15 47 47 H 0.97000 * 119.99781 * 180.02562 * 22 21 19 48 48 H 1.08995 * 109.62622 * 291.47015 * 27 18 17 49 49 H 1.09003 * 109.62424 * 170.88841 * 27 18 17 50 50 H 1.09004 * 109.49173 * 307.21833 * 28 15 14 51 51 H 1.08999 * 109.48630 * 67.29594 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.0846 1.1779 0.0000 4 8 1.4084 2.1839 -0.0416 5 6 3.5780 1.3271 0.0522 6 6 4.2472 0.0066 -0.3370 7 6 3.5936 -1.1236 0.4673 8 6 2.1482 -1.2875 -0.0045 9 1 2.1432 -1.6944 -1.0157 10 6 1.4278 -2.2368 0.9180 11 8 0.6951 -1.8039 1.7820 12 7 1.5979 -3.5670 0.7827 13 6 0.8980 -4.4899 1.6799 14 6 1.2629 -5.9304 1.3155 15 7 0.5607 -6.8557 2.2147 16 6 1.0338 -6.7068 3.5974 17 6 0.1573 -7.5526 4.5274 18 7 0.1371 -8.9337 4.0223 19 6 0.4205 -9.9884 4.8484 20 1 0.8209 -10.9036 4.4379 21 6 0.1929 -9.8813 6.2136 22 7 -0.5879 -8.9289 6.6780 23 14 0.9949 -11.0890 7.3917 24 1 2.3139 -10.5592 7.8217 25 1 0.1242 -11.2732 8.5805 26 1 1.1843 -12.3944 6.7096 27 6 -0.1949 -9.1520 2.6062 28 6 0.6954 -8.2434 1.7518 29 1 -0.3633 -0.0037 1.0277 30 1 -0.3633 0.8918 -0.5106 31 1 -0.3632 -0.8882 -0.5170 32 1 3.8794 1.6016 1.0631 33 1 3.8884 2.1086 -0.6415 34 1 5.3117 0.0528 -0.1067 35 1 4.1096 -0.1744 -1.4030 36 1 3.6058 -0.8722 1.5278 37 1 4.1387 -2.0534 0.3055 38 1 2.1842 -3.9132 0.0919 39 1 -0.1781 -4.3502 1.5773 40 1 1.1939 -4.2899 2.7097 41 1 2.3390 -6.0697 1.4183 42 1 0.9674 -6.1305 0.2856 43 1 2.0680 -7.0439 3.6663 44 1 0.9717 -5.6593 3.8922 45 1 -0.8565 -7.1522 4.5394 46 1 0.5720 -7.5373 5.5354 47 1 -0.7466 -8.8539 7.6319 48 1 -1.2425 -8.9055 2.4335 49 1 -0.0130 -10.1943 2.3440 50 1 0.3881 -8.3102 0.7081 51 1 1.7344 -8.5590 1.8464 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266297156.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:44 Heat of formation + Delta-G solvation = -58.754010 kcal Electronic energy + Delta-G solvation = -29871.249690 eV Core-core repulsion = 25805.343896 eV Total energy + Delta-G solvation = -4065.905794 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.07081 -40.47702 -39.69435 -37.44312 -36.82585 -35.56399 -34.91951 -33.33499 -31.65215 -31.56771 -29.95056 -28.19546 -27.65121 -26.02497 -24.87870 -24.25553 -23.26228 -22.65687 -21.87026 -20.82458 -19.71426 -18.80034 -18.54875 -17.84322 -17.57263 -17.12954 -16.79824 -16.52575 -16.36841 -16.01454 -15.74069 -15.35021 -15.31167 -15.24873 -15.07955 -14.95045 -14.82410 -14.41438 -14.28192 -14.13289 -13.55686 -13.23073 -13.19382 -13.01638 -12.99295 -12.82106 -12.63437 -12.62650 -12.52080 -12.21614 -12.03399 -11.99699 -11.85250 -11.83489 -11.55567 -11.43655 -11.29767 -10.71352 -10.59860 -10.17037 -9.79297 -9.28460 -8.69276 -7.88148 -5.33253 1.40116 1.46336 1.47191 1.47882 1.56612 1.81539 2.13440 2.50255 3.06259 3.27240 3.46361 3.58142 3.64515 3.68393 3.84944 3.88377 4.02797 4.11046 4.20788 4.29036 4.30762 4.35880 4.48654 4.53408 4.55747 4.56424 4.65913 4.72073 4.77592 4.82273 4.84630 4.88450 4.94696 4.95204 5.01559 5.03525 5.05913 5.21298 5.23039 5.29891 5.34496 5.37987 5.60774 5.67496 6.14667 6.25386 6.29760 6.36638 6.50512 7.03195 7.12332 7.18495 7.83701 8.37483 9.18593 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.023381 B = 0.001933 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.281709 B =14483.875065 C =14630.690708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.589 5.589 3 C 0.508 3.492 4 O -0.604 6.604 5 C -0.133 4.133 6 C -0.110 4.110 7 C -0.127 4.127 8 C 0.130 3.870 9 H 0.140 0.860 10 C 0.499 3.501 11 O -0.574 6.574 12 N -0.703 5.703 13 C 0.130 3.870 14 C 0.054 3.946 15 N -0.545 5.545 16 C 0.052 3.948 17 C 0.184 3.816 18 N -0.615 5.615 19 C -0.261 4.261 20 H 0.071 0.929 21 C -0.055 4.055 22 N -0.938 5.938 23 Si 0.969 3.031 24 H -0.285 1.285 25 H -0.297 1.297 26 H -0.266 1.266 27 C 0.140 3.860 28 C 0.059 3.941 29 H 0.044 0.956 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.104 0.896 33 H 0.113 0.887 34 H 0.109 0.891 35 H 0.092 0.908 36 H 0.061 0.939 37 H 0.127 0.873 38 H 0.422 0.578 39 H 0.057 0.943 40 H 0.048 0.952 41 H 0.051 0.949 42 H 0.105 0.895 43 H 0.025 0.975 44 H 0.074 0.926 45 H -0.007 1.007 46 H 0.054 0.946 47 H 0.249 0.751 48 H 0.014 0.986 49 H 0.063 0.937 50 H 0.102 0.898 51 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.189 14.232 -21.436 29.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.320 5.320 3 C 0.299 3.701 4 O -0.487 6.487 5 C -0.173 4.173 6 C -0.148 4.148 7 C -0.165 4.165 8 C 0.024 3.976 9 H 0.157 0.843 10 C 0.285 3.715 11 O -0.452 6.452 12 N -0.357 5.357 13 C 0.006 3.994 14 C -0.074 4.074 15 N -0.270 5.270 16 C -0.078 4.078 17 C 0.058 3.942 18 N -0.339 5.339 19 C -0.391 4.391 20 H 0.089 0.911 21 C -0.250 4.250 22 N -0.584 5.584 23 Si 0.797 3.203 24 H -0.212 1.212 25 H -0.224 1.224 26 H -0.191 1.191 27 C 0.015 3.985 28 C -0.070 4.070 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.122 0.878 33 H 0.131 0.869 34 H 0.128 0.872 35 H 0.110 0.890 36 H 0.080 0.920 37 H 0.145 0.855 38 H 0.260 0.740 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.123 0.877 43 H 0.043 0.957 44 H 0.092 0.908 45 H 0.012 0.988 46 H 0.072 0.928 47 H 0.058 0.942 48 H 0.032 0.968 49 H 0.081 0.919 50 H 0.120 0.880 51 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 12.795 15.131 -20.704 28.658 hybrid contribution 0.447 -0.882 1.308 1.640 sum 13.242 14.248 -19.396 27.470 Atomic orbital electron populations 1.21633 0.79986 1.02653 1.01713 1.47014 1.07578 1.05724 1.71720 1.20958 0.92797 0.81762 0.74603 1.90699 1.67916 1.37208 1.52832 1.21769 0.87704 1.02062 1.05754 1.21672 1.01369 0.90482 1.01244 1.21990 0.90581 1.03198 1.00764 1.21293 0.93622 0.81989 1.00728 0.84305 1.21275 0.81724 0.83568 0.84946 1.90771 1.39826 1.77890 1.36714 1.45658 1.48561 1.04835 1.36599 1.21109 0.96839 0.88308 0.93185 1.22199 0.97040 0.90119 0.98000 1.61734 1.57311 1.06134 1.01864 1.22580 0.96432 0.99482 0.89283 1.20607 0.94957 0.83080 0.95603 1.44427 1.80766 1.02309 1.06409 1.19564 1.34813 0.95519 0.89226 0.91141 1.25842 0.98997 1.00533 0.99676 1.70204 1.38532 1.36983 1.12711 0.85234 0.77583 0.79135 0.78301 1.21175 1.22397 1.19070 1.21185 0.95847 0.97566 0.83941 1.22459 0.98153 0.87083 0.99283 0.93724 0.91375 0.90240 0.87779 0.86892 0.87244 0.88952 0.92008 0.85495 0.74037 0.92411 0.93323 0.93100 0.87717 0.95707 0.90760 0.98840 0.92752 0.94166 0.96847 0.91874 0.87982 0.95153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.86 8.69 127.77 1.11 2.97 16 2 N -0.59 -11.12 2.95 -831.90 -2.46 -13.58 16 3 C 0.51 10.66 7.46 87.75 0.65 11.32 16 4 O -0.60 -18.51 16.16 -3.04 -0.05 -18.55 16 5 C -0.13 -1.42 6.03 29.71 0.18 -1.24 16 6 C -0.11 -0.37 6.03 30.73 0.19 -0.18 16 7 C -0.13 -0.76 5.29 30.68 0.16 -0.60 16 8 C 0.13 1.44 3.09 44.36 0.14 1.57 16 9 H 0.14 0.48 8.14 -2.39 -0.02 0.46 16 10 C 0.50 9.08 6.30 87.66 0.55 9.63 16 11 O -0.57 -17.06 14.36 -3.02 -0.04 -17.11 16 12 N -0.70 -9.47 5.56 -463.04 -2.57 -12.04 16 13 C 0.13 2.78 5.61 86.38 0.48 3.26 16 14 C 0.05 1.07 5.08 86.30 0.44 1.50 16 15 N -0.54 -16.68 4.63 -895.28 -4.14 -20.82 16 16 C 0.05 1.91 5.46 86.39 0.47 2.38 16 17 C 0.18 9.08 5.42 86.35 0.47 9.55 16 18 N -0.61 -31.08 3.04 -698.13 -2.12 -33.20 16 19 C -0.26 -14.34 9.63 84.03 0.81 -13.54 16 20 H 0.07 3.72 7.88 -2.91 -0.02 3.70 16 21 C -0.06 -3.12 4.94 84.86 0.42 -2.70 16 22 N -0.94 -56.51 11.15 21.65 0.24 -56.27 16 23 Si 0.97 44.89 29.59 68.60 2.03 46.92 16 24 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 25 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 26 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 27 C 0.14 5.65 6.69 86.35 0.58 6.23 16 28 C 0.06 1.79 5.62 86.38 0.49 2.27 16 29 H 0.04 1.26 6.96 -2.39 -0.02 1.24 16 30 H 0.07 1.62 7.11 -2.39 -0.02 1.60 16 31 H 0.08 1.45 7.75 -2.39 -0.02 1.43 16 32 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.11 0.98 8.14 -2.38 -0.02 0.96 16 34 H 0.11 -0.06 8.14 -2.38 -0.02 -0.08 16 35 H 0.09 0.07 8.13 -2.39 -0.02 0.05 16 36 H 0.06 0.67 8.10 -2.39 -0.02 0.65 16 37 H 0.13 -0.03 8.14 -2.39 -0.02 -0.05 16 38 H 0.42 1.97 8.47 -92.71 -0.79 1.18 16 39 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.05 1.29 6.40 -2.39 -0.02 1.28 16 41 H 0.05 0.88 8.12 -2.39 -0.02 0.86 16 42 H 0.10 1.50 7.97 -2.39 -0.02 1.48 16 43 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.07 2.58 6.16 -2.39 -0.01 2.56 16 45 H -0.01 -0.36 8.14 -2.38 -0.02 -0.38 16 46 H 0.05 3.03 6.12 -2.39 -0.01 3.02 16 47 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 48 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 49 H 0.06 2.41 7.95 -2.39 -0.02 2.39 16 50 H 0.10 2.32 7.99 -2.38 -0.02 2.31 16 51 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -83.40 394.93 -1.85 -85.24 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: 0.14 Total: 6.98 kcal Atomic # 6 Polarization: 25.30 SS G_CDS: 7.13 Total: 32.43 kcal Atomic # 7 Polarization: -124.86 SS G_CDS: -11.05 Total: -135.91 kcal Atomic # 8 Polarization: -35.57 SS G_CDS: -0.09 Total: -35.66 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -83.40 -1.85 -85.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266297156.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.489 kcal (2) G-P(sol) polarization free energy of solvation -83.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds