Wall clock time and date at job start Tue Mar 31 2020 20:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46904 * 110.99987 * 2 1 4 4 C 1.53000 * 109.47226 * 293.95387 * 3 2 1 5 5 N 1.46498 * 109.47121 * 180.02562 * 4 3 2 6 6 C 1.34767 * 120.00071 * 180.02562 * 5 4 3 7 7 O 1.21281 * 120.00366 * 359.97438 * 6 5 4 8 8 C 1.50700 * 120.00145 * 179.97438 * 6 5 4 9 9 C 1.54136 * 110.75025 * 206.01140 * 8 6 5 10 10 C 1.55167 * 102.88651 * 98.16228 * 9 8 6 11 11 C 1.54839 * 101.65616 * 36.15655 * 10 9 8 12 12 N 1.47860 * 111.38143 * 325.29591 * 8 6 5 13 13 C 1.47955 * 108.37129 * 120.68565 * 12 8 6 14 14 C 1.54838 * 105.06727 * 337.18331 * 13 12 8 15 15 C 1.54138 * 110.74328 * 84.57230 * 8 6 5 16 16 C 1.46899 * 111.00161 * 123.95911 * 2 1 3 17 17 C 1.50691 * 109.47337 * 66.04190 * 16 2 1 18 18 O 1.21299 * 120.00145 * 0.02562 * 17 16 2 19 19 N 1.34778 * 120.00373 * 180.02562 * 17 16 2 20 20 C 1.37097 * 120.00529 * 180.02562 * 19 17 16 21 21 H 1.08004 * 119.99632 * 359.97438 * 20 19 17 22 22 C 1.38945 * 120.00026 * 179.97438 * 20 19 17 23 23 N 1.31410 * 120.00138 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99646 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.46949 * 60.00606 * 24 22 20 26 26 H 1.48501 * 109.46909 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47552 * 300.00149 * 24 22 20 28 28 H 1.08998 * 109.47231 * 59.99503 * 1 2 3 29 29 H 1.09004 * 109.47203 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46877 * 299.99614 * 1 2 3 31 31 H 1.09003 * 109.46717 * 173.95664 * 3 2 1 32 32 H 1.08999 * 109.47002 * 53.95690 * 3 2 1 33 33 H 1.09006 * 109.46651 * 60.00139 * 4 3 2 34 34 H 1.09000 * 109.47016 * 300.00476 * 4 3 2 35 35 H 0.97001 * 119.99695 * 0.02562 * 5 4 3 36 36 H 1.08998 * 110.72897 * 339.81954 * 9 8 6 37 37 H 1.08992 * 110.73658 * 216.50984 * 9 8 6 38 38 H 1.08996 * 110.99289 * 154.25063 * 10 9 8 39 39 H 1.09007 * 110.98542 * 278.06801 * 10 9 8 40 40 H 1.09001 * 110.32292 * 82.22949 * 11 10 9 41 41 H 1.08999 * 110.32238 * 204.43614 * 11 10 9 42 42 H 1.09008 * 110.31806 * 218.28753 * 13 12 8 43 43 H 1.08998 * 110.40931 * 96.13165 * 13 12 8 44 44 H 1.08995 * 110.98861 * 278.58014 * 14 13 12 45 45 H 1.09003 * 110.98607 * 154.76795 * 14 13 12 46 46 H 1.08997 * 110.73153 * 20.19181 * 15 8 6 47 47 H 1.09007 * 110.73010 * 143.48855 * 15 8 6 48 48 H 1.09000 * 109.47002 * 186.04266 * 16 2 1 49 49 H 1.09004 * 109.46514 * 306.04118 * 16 2 1 50 50 H 0.97000 * 119.99441 * 359.97438 * 19 17 16 51 51 H 0.96999 * 119.99664 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6315 2.0575 -1.3183 5 7 2.1570 3.4250 -1.3185 6 6 1.9558 4.2240 -2.3849 7 8 1.3400 3.8110 -3.3446 8 6 2.4959 5.6309 -2.3849 9 6 1.6610 6.5364 -3.3117 10 6 0.7012 7.2513 -2.3241 11 6 1.6122 7.4444 -1.0870 12 7 2.4498 6.2260 -1.0321 13 6 3.8274 6.5940 -0.6374 14 6 4.7470 5.6980 -1.5028 15 6 3.9674 5.6508 -2.8434 16 6 1.9955 -0.7661 1.1375 17 6 1.6369 -2.2204 0.9727 18 8 1.0053 -2.5833 0.0028 19 7 2.0180 -3.1181 1.9031 20 6 1.6923 -4.4413 1.7529 21 1 1.1299 -4.7643 0.8893 22 6 2.0857 -5.3667 2.7118 23 7 2.7704 -4.9737 3.7623 24 14 1.6412 -7.1696 2.5075 25 1 2.2329 -7.6855 1.2471 26 1 2.1729 -7.9438 3.6578 27 1 0.1640 -7.3125 2.4557 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.0798 1.3444 0.1082 32 1 1.5611 1.9273 0.8309 33 1 0.5471 2.0845 -1.4264 34 1 2.0658 1.5015 -2.1492 35 1 2.6498 3.7552 -0.5510 36 1 1.1001 5.9397 -4.0309 37 1 2.2981 7.2589 -3.8216 38 1 0.3753 8.2119 -2.7227 39 1 -0.1540 6.6193 -2.0843 40 1 2.2376 8.3284 -1.2117 41 1 1.0096 7.5304 -0.1828 42 1 3.9856 6.3881 0.4213 43 1 4.0154 7.6464 -0.8499 44 1 4.8407 4.7019 -1.0703 45 1 5.7263 6.1576 -1.6365 46 1 4.2105 4.7454 -3.3996 47 1 4.1733 6.5389 -3.4410 48 1 3.0798 -0.6612 1.1755 49 1 1.5611 -0.3873 2.0627 50 1 2.5234 -2.8279 2.6785 51 1 3.0446 -5.6198 4.4319 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267205501.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:19 Heat of formation + Delta-G solvation = -54.520413 kcal Electronic energy + Delta-G solvation = -29700.354056 eV Core-core repulsion = 25634.631844 eV Total energy + Delta-G solvation = -4065.722212 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.27899 -38.89403 -38.44309 -36.72798 -34.78918 -34.20339 -33.74763 -31.80114 -31.23142 -29.74232 -28.45999 -27.60659 -25.92644 -25.33756 -24.03611 -22.33325 -21.94297 -21.16925 -21.12702 -19.43910 -19.13486 -17.83184 -17.70368 -16.61623 -16.20187 -15.91348 -15.68977 -15.45058 -14.93643 -14.72969 -14.61391 -14.53583 -14.26682 -13.92960 -13.82915 -13.48960 -13.39994 -13.27193 -12.98589 -12.73874 -12.48765 -12.09319 -12.03360 -11.91694 -11.79882 -11.55864 -11.50601 -11.39413 -11.35959 -11.27148 -11.21467 -10.98620 -10.89784 -10.83746 -10.42401 -10.19637 -10.05412 -9.44948 -9.04991 -8.96891 -8.44529 -7.96396 -7.85404 -6.39857 -3.80496 2.47633 3.01123 3.21790 3.27201 3.31982 3.42686 3.92476 3.98873 4.01773 4.12003 4.29523 4.32342 4.50102 4.56359 4.67138 4.72344 4.88788 4.91062 5.03317 5.05696 5.10945 5.17349 5.23463 5.27161 5.32274 5.39664 5.43523 5.46928 5.51044 5.54951 5.66275 5.68000 5.71321 5.73860 5.81898 5.91252 5.95946 5.97293 6.06619 6.25303 6.29834 6.40805 6.44299 6.59853 7.24502 7.36681 7.48132 7.57050 8.08267 8.17583 8.64041 9.20167 9.56417 10.08586 10.77865 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.026325 B = 0.001842 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.378335 B =15199.335302 C =15576.863877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.515 5.515 3 C 0.046 3.954 4 C 0.120 3.880 5 N -0.712 5.712 6 C 0.542 3.458 7 O -0.543 6.543 8 C 0.069 3.931 9 C -0.127 4.127 10 C -0.133 4.133 11 C 0.035 3.965 12 N -0.506 5.506 13 C 0.031 3.969 14 C -0.135 4.135 15 C -0.126 4.126 16 C 0.047 3.953 17 C 0.444 3.556 18 O -0.576 6.576 19 N -0.565 5.565 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.903 5.903 24 Si 0.931 3.069 25 H -0.273 1.273 26 H -0.285 1.285 27 H -0.274 1.274 28 H 0.063 0.937 29 H 0.097 0.903 30 H 0.015 0.985 31 H 0.077 0.923 32 H 0.037 0.963 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.404 0.596 36 H 0.095 0.905 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.054 0.946 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.055 0.945 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.080 0.920 47 H 0.081 0.919 48 H 0.088 0.912 49 H 0.048 0.952 50 H 0.392 0.608 51 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.619 28.868 -6.517 29.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.239 5.239 3 C -0.083 4.083 4 C -0.003 4.003 5 N -0.363 5.363 6 C 0.326 3.674 7 O -0.420 6.420 8 C -0.024 4.024 9 C -0.165 4.165 10 C -0.171 4.171 11 C -0.092 4.092 12 N -0.231 5.231 13 C -0.097 4.097 14 C -0.173 4.173 15 C -0.165 4.165 16 C -0.084 4.084 17 C 0.229 3.771 18 O -0.460 6.460 19 N -0.201 5.201 20 C -0.428 4.428 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 H 0.081 0.919 29 H 0.116 0.884 30 H 0.034 0.966 31 H 0.096 0.904 32 H 0.055 0.945 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.239 0.761 36 H 0.113 0.887 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.072 0.928 41 H 0.103 0.897 42 H 0.105 0.895 43 H 0.073 0.927 44 H 0.097 0.903 45 H 0.099 0.901 46 H 0.099 0.901 47 H 0.099 0.901 48 H 0.106 0.894 49 H 0.066 0.934 50 H 0.225 0.775 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.743 27.557 -7.714 28.747 hybrid contribution 0.515 0.415 1.156 1.332 sum 3.258 27.972 -6.558 28.914 Atomic orbital electron populations 1.22618 0.86511 1.04652 0.99127 1.61448 1.08931 1.10528 1.43012 1.22238 1.00612 0.89654 0.95809 1.21343 0.99592 0.80937 0.98461 1.45802 1.57231 1.13666 1.19636 1.19898 0.79001 0.86190 0.82263 1.90708 1.41127 1.75470 1.34707 1.22392 0.96782 0.93220 0.89994 1.22841 0.97968 0.97818 0.97908 1.22795 0.98435 1.01015 0.94886 1.23299 0.95763 0.90920 0.99255 1.65273 1.10321 1.24934 1.22549 1.23361 0.87269 0.98307 1.00741 1.22843 0.98704 1.01000 0.94770 1.22860 0.91907 1.03620 0.98112 1.21862 1.00653 0.94190 0.91700 1.19718 0.85488 0.86618 0.85250 1.90494 1.43837 1.80108 1.31569 1.41855 1.49495 1.07347 1.21439 1.19650 1.32945 0.82285 1.07895 0.87955 1.25256 0.96845 1.00563 0.95324 1.69604 1.38081 1.35838 1.10900 0.85916 0.78896 0.81709 0.77688 1.19888 1.21022 1.19935 0.91873 0.88432 0.96640 0.90424 0.94514 0.91289 0.90419 0.76112 0.88652 0.90559 0.90412 0.90518 0.92757 0.89741 0.89501 0.92677 0.90287 0.90101 0.90095 0.90051 0.89354 0.93369 0.77508 0.91861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 8.96 60.07 0.54 0.85 16 2 N -0.51 -8.66 4.50 -244.37 -1.10 -9.76 16 3 C 0.05 0.58 5.07 -3.82 -0.02 0.56 16 4 C 0.12 1.55 5.60 -4.04 -0.02 1.53 16 5 N -0.71 -7.80 5.48 -60.30 -0.33 -8.13 16 6 C 0.54 6.57 6.68 -10.99 -0.07 6.50 16 7 O -0.54 -8.66 15.66 5.56 0.09 -8.57 16 8 C 0.07 0.60 0.91 -131.04 -0.12 0.48 16 9 C -0.13 -1.04 5.99 -24.99 -0.15 -1.19 16 10 C -0.13 -0.94 7.07 -24.61 -0.17 -1.11 16 11 C 0.04 0.23 6.72 -2.27 -0.02 0.21 16 12 N -0.51 -3.75 4.79 -214.06 -1.03 -4.78 16 13 C 0.03 0.17 6.72 -2.27 -0.02 0.16 16 14 C -0.14 -0.75 7.07 -24.62 -0.17 -0.92 16 15 C -0.13 -0.89 6.03 -24.99 -0.15 -1.04 16 16 C 0.05 0.84 5.45 -4.98 -0.03 0.82 16 17 C 0.44 10.50 7.47 -10.99 -0.08 10.42 16 18 O -0.58 -15.60 13.91 5.54 0.08 -15.53 16 19 N -0.56 -14.32 5.29 -10.96 -0.06 -14.37 16 20 C -0.30 -8.33 9.68 -14.94 -0.14 -8.47 16 21 H 0.10 2.99 7.16 -52.48 -0.38 2.62 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.56 13.05 55.50 0.72 -23.84 16 24 Si 0.93 21.16 29.55 -169.99 -5.02 16.14 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 28 H 0.06 0.97 6.47 -51.93 -0.34 0.63 16 29 H 0.10 1.97 5.83 -51.93 -0.30 1.67 16 30 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.08 0.88 7.93 -51.93 -0.41 0.47 16 32 H 0.04 0.43 8.12 -51.93 -0.42 0.01 16 33 H 0.07 0.97 6.55 -51.93 -0.34 0.63 16 34 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.40 3.66 7.92 -40.82 -0.32 3.33 16 36 H 0.09 0.98 6.85 -51.93 -0.36 0.63 16 37 H 0.08 0.50 7.30 -51.93 -0.38 0.12 16 38 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.05 0.28 7.08 -51.93 -0.37 -0.09 16 41 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.09 0.44 8.14 -51.92 -0.42 0.01 16 43 H 0.05 0.26 7.08 -51.93 -0.37 -0.11 16 44 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.08 0.66 7.84 -51.93 -0.41 0.25 16 47 H 0.08 0.47 7.30 -51.93 -0.38 0.09 16 48 H 0.09 1.40 7.93 -51.93 -0.41 0.99 16 49 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 50 H 0.39 9.47 7.90 -40.82 -0.32 9.14 16 51 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 399.31 15.07 6.02 6.02 Total: -1.00 -32.99 399.31 -9.80 -42.79 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: -8.44 Total: 10.76 kcal Atomic # 6 Polarization: 10.00 SS G_CDS: -0.73 Total: 9.28 kcal Atomic # 7 Polarization: -59.10 SS G_CDS: -1.79 Total: -60.88 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: 0.16 Total: -24.09 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.99 -9.80 -42.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267205501.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.730 kcal (2) G-P(sol) polarization free energy of solvation -32.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds