Wall clock time and date at job start Tue Mar 31 2020 20:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46904 * 110.99987 * 2 1 4 4 C 1.53000 * 109.47226 * 293.95387 * 3 2 1 5 5 N 1.46498 * 109.47121 * 180.02562 * 4 3 2 6 6 C 1.34767 * 120.00071 * 180.02562 * 5 4 3 7 7 O 1.21281 * 120.00366 * 359.97438 * 6 5 4 8 8 C 1.50700 * 120.00145 * 179.97438 * 6 5 4 9 9 C 1.54136 * 110.75025 * 206.01140 * 8 6 5 10 10 C 1.55167 * 102.88651 * 98.16228 * 9 8 6 11 11 C 1.54839 * 101.65616 * 36.15655 * 10 9 8 12 12 N 1.47860 * 111.38143 * 325.29591 * 8 6 5 13 13 C 1.47955 * 108.37129 * 120.68565 * 12 8 6 14 14 C 1.54838 * 105.06727 * 337.18331 * 13 12 8 15 15 C 1.54138 * 110.74328 * 84.57230 * 8 6 5 16 16 C 1.46899 * 111.00161 * 123.95911 * 2 1 3 17 17 C 1.50691 * 109.47337 * 66.04190 * 16 2 1 18 18 O 1.21299 * 120.00145 * 0.02562 * 17 16 2 19 19 N 1.34778 * 120.00373 * 180.02562 * 17 16 2 20 20 C 1.37097 * 120.00529 * 180.02562 * 19 17 16 21 21 H 1.08004 * 119.99632 * 359.97438 * 20 19 17 22 22 C 1.38945 * 120.00026 * 179.97438 * 20 19 17 23 23 N 1.31410 * 120.00138 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99646 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.46949 * 60.00606 * 24 22 20 26 26 H 1.48501 * 109.46909 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47552 * 300.00149 * 24 22 20 28 28 H 1.08998 * 109.47231 * 59.99503 * 1 2 3 29 29 H 1.09004 * 109.47203 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46877 * 299.99614 * 1 2 3 31 31 H 1.09003 * 109.46717 * 173.95664 * 3 2 1 32 32 H 1.08999 * 109.47002 * 53.95690 * 3 2 1 33 33 H 1.09006 * 109.46651 * 60.00139 * 4 3 2 34 34 H 1.09000 * 109.47016 * 300.00476 * 4 3 2 35 35 H 0.97001 * 119.99695 * 0.02562 * 5 4 3 36 36 H 1.08998 * 110.72897 * 339.81954 * 9 8 6 37 37 H 1.08992 * 110.73658 * 216.50984 * 9 8 6 38 38 H 1.08996 * 110.99289 * 154.25063 * 10 9 8 39 39 H 1.09007 * 110.98542 * 278.06801 * 10 9 8 40 40 H 1.09001 * 110.32292 * 82.22949 * 11 10 9 41 41 H 1.08999 * 110.32238 * 204.43614 * 11 10 9 42 42 H 1.09008 * 110.31806 * 218.28753 * 13 12 8 43 43 H 1.08998 * 110.40931 * 96.13165 * 13 12 8 44 44 H 1.08995 * 110.98861 * 278.58014 * 14 13 12 45 45 H 1.09003 * 110.98607 * 154.76795 * 14 13 12 46 46 H 1.08997 * 110.73153 * 20.19181 * 15 8 6 47 47 H 1.09007 * 110.73010 * 143.48855 * 15 8 6 48 48 H 1.09000 * 109.47002 * 186.04266 * 16 2 1 49 49 H 1.09004 * 109.46514 * 306.04118 * 16 2 1 50 50 H 0.97000 * 119.99441 * 359.97438 * 19 17 16 51 51 H 0.96999 * 119.99664 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6315 2.0575 -1.3183 5 7 2.1570 3.4250 -1.3185 6 6 1.9558 4.2240 -2.3849 7 8 1.3400 3.8110 -3.3446 8 6 2.4959 5.6309 -2.3849 9 6 1.6610 6.5364 -3.3117 10 6 0.7012 7.2513 -2.3241 11 6 1.6122 7.4444 -1.0870 12 7 2.4498 6.2260 -1.0321 13 6 3.8274 6.5940 -0.6374 14 6 4.7470 5.6980 -1.5028 15 6 3.9674 5.6508 -2.8434 16 6 1.9955 -0.7661 1.1375 17 6 1.6369 -2.2204 0.9727 18 8 1.0053 -2.5833 0.0028 19 7 2.0180 -3.1181 1.9031 20 6 1.6923 -4.4413 1.7529 21 1 1.1299 -4.7643 0.8893 22 6 2.0857 -5.3667 2.7118 23 7 2.7704 -4.9737 3.7623 24 14 1.6412 -7.1696 2.5075 25 1 2.2329 -7.6855 1.2471 26 1 2.1729 -7.9438 3.6578 27 1 0.1640 -7.3125 2.4557 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.0798 1.3444 0.1082 32 1 1.5611 1.9273 0.8309 33 1 0.5471 2.0845 -1.4264 34 1 2.0658 1.5015 -2.1492 35 1 2.6498 3.7552 -0.5510 36 1 1.1001 5.9397 -4.0309 37 1 2.2981 7.2589 -3.8216 38 1 0.3753 8.2119 -2.7227 39 1 -0.1540 6.6193 -2.0843 40 1 2.2376 8.3284 -1.2117 41 1 1.0096 7.5304 -0.1828 42 1 3.9856 6.3881 0.4213 43 1 4.0154 7.6464 -0.8499 44 1 4.8407 4.7019 -1.0703 45 1 5.7263 6.1576 -1.6365 46 1 4.2105 4.7454 -3.3996 47 1 4.1733 6.5389 -3.4410 48 1 3.0798 -0.6612 1.1755 49 1 1.5611 -0.3873 2.0627 50 1 2.5234 -2.8279 2.6785 51 1 3.0446 -5.6198 4.4319 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267205501.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:17 Heat of formation + Delta-G solvation = -80.912768 kcal Electronic energy + Delta-G solvation = -29701.498514 eV Core-core repulsion = 25634.631844 eV Total energy + Delta-G solvation = -4066.866670 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.97568 -40.40975 -39.55238 -38.14295 -36.03318 -35.56423 -34.78817 -33.26649 -32.39405 -30.82917 -29.36085 -28.83100 -27.01665 -26.42828 -25.50290 -23.24142 -22.51976 -22.26730 -21.66142 -20.98301 -20.27379 -19.84303 -18.43289 -17.74256 -17.41257 -17.01088 -16.76360 -16.58313 -16.27067 -16.05313 -15.86445 -15.52396 -15.22361 -15.19006 -15.01428 -14.70694 -14.40386 -14.32882 -13.94331 -13.77207 -13.44546 -13.35574 -13.15428 -13.03265 -12.92816 -12.58651 -12.55674 -12.52500 -12.44633 -12.40886 -12.16498 -12.10032 -12.06326 -11.92529 -11.79116 -11.44599 -11.36059 -10.96554 -10.28506 -10.07652 -9.98445 -9.51940 -9.24824 -8.45027 -5.93284 1.40414 1.42125 1.52816 1.56285 2.03873 2.07533 2.31509 2.84395 2.92632 3.21851 3.42170 3.43940 3.51300 3.73054 3.82943 3.99822 4.01348 4.07130 4.10077 4.20596 4.25917 4.36220 4.42907 4.45485 4.52934 4.53392 4.62596 4.63208 4.64240 4.71012 4.84688 4.85049 4.89530 4.93820 4.97745 5.06090 5.06804 5.14802 5.19357 5.20382 5.23974 5.42148 5.43263 5.72218 5.85455 5.97187 6.04894 6.15785 6.58553 6.63023 7.15018 7.26061 7.58655 8.15187 8.72086 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.026325 B = 0.001842 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.378335 B =15199.335302 C =15576.863877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.538 5.538 3 C 0.056 3.944 4 C 0.129 3.871 5 N -0.700 5.700 6 C 0.535 3.465 7 O -0.590 6.590 8 C 0.072 3.928 9 C -0.128 4.128 10 C -0.132 4.132 11 C 0.038 3.962 12 N -0.517 5.517 13 C 0.032 3.968 14 C -0.130 4.130 15 C -0.126 4.126 16 C 0.060 3.940 17 C 0.440 3.560 18 O -0.616 6.616 19 N -0.574 5.574 20 C -0.332 4.332 21 H 0.077 0.923 22 C -0.013 4.013 23 N -0.920 5.920 24 Si 0.992 3.008 25 H -0.273 1.273 26 H -0.270 1.270 27 H -0.273 1.273 28 H 0.070 0.930 29 H 0.057 0.943 30 H 0.034 0.966 31 H 0.098 0.902 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.416 0.584 36 H 0.066 0.934 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.054 0.946 40 H 0.074 0.926 41 H 0.087 0.913 42 H 0.095 0.905 43 H 0.070 0.930 44 H 0.073 0.927 45 H 0.098 0.902 46 H 0.064 0.936 47 H 0.097 0.903 48 H 0.115 0.885 49 H 0.073 0.927 50 H 0.397 0.603 51 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.169 31.109 -5.120 31.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.263 5.263 3 C -0.072 4.072 4 C 0.004 3.996 5 N -0.351 5.351 6 C 0.321 3.679 7 O -0.470 6.470 8 C -0.021 4.021 9 C -0.167 4.167 10 C -0.170 4.170 11 C -0.090 4.090 12 N -0.242 5.242 13 C -0.095 4.095 14 C -0.168 4.168 15 C -0.164 4.164 16 C -0.071 4.071 17 C 0.227 3.773 18 O -0.502 6.502 19 N -0.211 5.211 20 C -0.462 4.462 21 H 0.095 0.905 22 C -0.213 4.213 23 N -0.561 5.561 24 Si 0.815 3.185 25 H -0.198 1.198 26 H -0.194 1.194 27 H -0.198 1.198 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.053 0.947 31 H 0.116 0.884 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.253 0.747 36 H 0.085 0.915 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.073 0.927 40 H 0.092 0.908 41 H 0.105 0.895 42 H 0.114 0.886 43 H 0.088 0.912 44 H 0.092 0.908 45 H 0.117 0.883 46 H 0.082 0.918 47 H 0.116 0.884 48 H 0.133 0.867 49 H 0.090 0.910 50 H 0.231 0.769 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.324 29.838 -6.270 30.794 hybrid contribution 0.009 -0.228 0.673 0.711 sum 4.333 29.609 -5.597 30.444 Atomic orbital electron populations 1.22451 0.86947 1.02362 1.00476 1.61342 1.08853 1.13049 1.43040 1.22211 1.01724 0.87345 0.95934 1.21098 0.98542 0.81839 0.98083 1.45680 1.56797 1.12734 1.19922 1.20648 0.78119 0.87616 0.81521 1.90683 1.43235 1.76675 1.36401 1.22293 0.97672 0.90980 0.91168 1.22854 0.98314 0.97891 0.97653 1.22787 0.97671 1.01320 0.95204 1.23337 0.95714 0.91159 0.98767 1.65216 1.11789 1.25789 1.21413 1.23430 0.85886 0.99070 1.01091 1.22849 0.99386 1.01025 0.93571 1.22882 0.90862 1.03589 0.99112 1.21738 1.02356 0.89944 0.93022 1.20809 0.83735 0.88868 0.83870 1.90477 1.45201 1.81476 1.33054 1.41914 1.50098 1.06978 1.22159 1.19600 1.34428 0.84118 1.08025 0.90461 1.26010 0.96324 1.04230 0.94732 1.69660 1.38067 1.37192 1.11141 0.85011 0.78576 0.76910 0.77969 1.19843 1.19435 1.19808 0.91088 0.92411 0.94727 0.88389 0.92369 0.92816 0.92696 0.74659 0.91522 0.88456 0.88529 0.92697 0.90776 0.89479 0.88640 0.91219 0.90836 0.88310 0.91754 0.88406 0.86687 0.90963 0.76937 0.91321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.86 8.96 127.69 1.14 2.00 16 2 N -0.54 -17.54 4.50 -927.04 -4.17 -21.71 16 3 C 0.06 1.29 5.07 86.30 0.44 1.73 16 4 C 0.13 3.29 5.60 86.38 0.48 3.77 16 5 N -0.70 -14.82 5.48 -463.07 -2.54 -17.35 16 6 C 0.53 13.07 6.68 87.66 0.59 13.66 16 7 O -0.59 -19.76 15.66 -3.03 -0.05 -19.81 16 8 C 0.07 1.18 0.91 3.37 0.00 1.18 16 9 C -0.13 -2.01 5.99 31.72 0.19 -1.82 16 10 C -0.13 -1.69 7.07 31.97 0.23 -1.47 16 11 C 0.04 0.38 6.72 86.73 0.58 0.97 16 12 N -0.52 -6.48 4.79 -831.16 -3.98 -10.46 16 13 C 0.03 0.25 6.72 86.73 0.58 0.83 16 14 C -0.13 -1.07 7.07 31.96 0.23 -0.85 16 15 C -0.13 -1.56 6.03 31.72 0.19 -1.36 16 16 C 0.06 2.05 5.45 85.55 0.47 2.52 16 17 C 0.44 21.03 7.47 87.65 0.66 21.69 16 18 O -0.62 -34.51 13.91 -3.09 -0.04 -34.56 16 19 N -0.57 -29.48 5.29 -306.98 -1.62 -31.10 16 20 C -0.33 -18.98 9.68 84.04 0.81 -18.16 16 21 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 22 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 23 N -0.92 -49.58 13.05 21.66 0.28 -49.30 16 24 Si 0.99 43.30 29.55 68.60 2.03 45.33 16 25 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 26 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 27 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 28 H 0.07 2.21 6.47 -2.39 -0.02 2.20 16 29 H 0.06 2.41 5.83 -2.39 -0.01 2.40 16 30 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.10 1.91 7.93 -2.39 -0.02 1.89 16 32 H 0.06 1.15 8.12 -2.39 -0.02 1.13 16 33 H 0.05 1.54 6.55 -2.38 -0.02 1.52 16 34 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.42 6.72 7.92 -92.71 -0.73 5.99 16 36 H 0.07 1.45 6.85 -2.39 -0.02 1.43 16 37 H 0.10 1.08 7.30 -2.39 -0.02 1.06 16 38 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.05 0.93 8.14 -2.38 -0.02 0.92 16 40 H 0.07 0.49 7.08 -2.39 -0.02 0.47 16 41 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.10 0.61 8.14 -2.38 -0.02 0.59 16 43 H 0.07 0.36 7.08 -2.39 -0.02 0.35 16 44 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 46 H 0.06 1.01 7.84 -2.39 -0.02 0.99 16 47 H 0.10 0.89 7.30 -2.38 -0.02 0.87 16 48 H 0.12 3.32 7.93 -2.39 -0.02 3.31 16 49 H 0.07 2.15 8.12 -2.38 -0.02 2.13 16 50 H 0.40 19.18 7.90 -92.71 -0.73 18.45 16 51 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 Total: -1.00 -74.47 399.31 -3.55 -78.03 By element: Atomic # 1 Polarization: 37.02 SS G_CDS: -0.52 Total: 36.50 kcal Atomic # 6 Polarization: 17.37 SS G_CDS: 7.05 Total: 24.42 kcal Atomic # 7 Polarization: -117.89 SS G_CDS: -12.03 Total: -129.92 kcal Atomic # 8 Polarization: -54.28 SS G_CDS: -0.09 Total: -54.37 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -74.47 -3.55 -78.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267205501.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.884 kcal (2) G-P(sol) polarization free energy of solvation -74.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds