Wall clock time and date at job start Tue Mar 31 2020 21:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47263 * 2 1 4 4 N 1.46497 * 109.46889 * 119.99938 * 2 1 3 5 5 C 1.36937 * 120.00374 * 302.23987 * 4 2 1 6 6 H 1.08009 * 119.99414 * 321.91725 * 5 4 2 7 7 C 1.38806 * 120.00285 * 141.91011 * 5 4 2 8 8 N 1.31621 * 120.00113 * 338.46316 * 7 5 4 9 9 Si 1.86803 * 120.00035 * 158.45681 * 7 5 4 10 10 H 1.48503 * 109.47070 * 90.00374 * 9 7 5 11 11 H 1.48493 * 109.47346 * 210.00425 * 9 7 5 12 12 H 1.48501 * 109.47173 * 330.00432 * 9 7 5 13 13 C 1.46502 * 119.99707 * 122.23853 * 4 2 1 14 14 C 1.53002 * 109.46846 * 90.00171 * 13 4 2 15 15 C 1.53003 * 109.46926 * 179.97438 * 14 13 4 16 16 N 1.46498 * 109.47029 * 179.97438 * 15 14 13 17 17 C 1.34777 * 119.99882 * 180.27188 * 16 15 14 18 18 O 1.21541 * 119.99736 * 359.72937 * 17 16 15 19 19 C 1.48001 * 120.00046 * 179.72362 * 17 16 15 20 20 N 1.34181 * 126.69772 * 0.02642 * 19 17 16 21 21 N 1.28986 * 107.25286 * 179.97438 * 20 19 17 22 22 N 1.28721 * 108.98712 * 0.02562 * 21 20 19 23 23 C 1.46502 * 125.31891 * 180.02562 * 22 21 20 24 24 C 1.53001 * 109.47187 * 359.97438 * 23 22 21 25 25 C 1.53005 * 109.46945 * 119.97559 * 23 22 21 26 26 C 1.52996 * 109.46937 * 239.97708 * 23 22 21 27 27 N 1.28866 * 109.35623 * 359.76566 * 22 21 20 28 28 H 1.09005 * 109.47017 * 305.40780 * 1 2 3 29 29 H 1.09000 * 109.46957 * 65.40304 * 1 2 3 30 30 H 1.09000 * 109.47720 * 185.40329 * 1 2 3 31 31 H 1.09001 * 109.46714 * 239.99723 * 2 1 3 32 32 H 1.08996 * 109.47079 * 180.43896 * 3 2 1 33 33 H 1.09000 * 109.47041 * 300.43651 * 3 2 1 34 34 H 1.08998 * 109.47432 * 60.43596 * 3 2 1 35 35 H 0.96993 * 119.99821 * 179.97438 * 8 7 5 36 36 H 1.08998 * 109.47004 * 329.99703 * 13 4 2 37 37 H 1.09002 * 109.47178 * 209.99853 * 13 4 2 38 38 H 1.09003 * 109.47266 * 59.99808 * 14 13 4 39 39 H 1.08995 * 109.46734 * 299.99474 * 14 13 4 40 40 H 1.09003 * 109.47260 * 59.99859 * 15 14 13 41 41 H 1.09002 * 109.47182 * 299.99735 * 15 14 13 42 42 H 0.96999 * 120.00321 * 359.97438 * 16 15 14 43 43 H 1.08998 * 109.47180 * 59.99781 * 24 23 22 44 44 H 1.09002 * 109.46784 * 180.02562 * 24 23 22 45 45 H 1.08999 * 109.46789 * 300.00062 * 24 23 22 46 46 H 1.09000 * 109.46984 * 59.99955 * 25 23 22 47 47 H 1.09003 * 109.46639 * 179.97438 * 25 23 22 48 48 H 1.08998 * 109.47166 * 300.00062 * 25 23 22 49 49 H 1.08999 * 109.47699 * 60.00132 * 26 23 22 50 50 H 1.09007 * 109.46934 * 180.02562 * 26 23 22 51 51 H 1.08998 * 109.46856 * 299.99662 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6501 -0.2502 2.4394 6 1 1.5673 0.8090 2.6344 7 6 1.3831 -1.1647 3.4488 8 7 1.0659 -2.4056 3.1456 9 14 1.4741 -0.6344 5.2377 10 1 0.1444 -0.1389 5.6754 11 1 1.8718 -1.7926 6.0777 12 1 2.4785 0.4498 5.3821 13 6 2.9005 -1.8525 1.0623 14 6 4.3580 -1.3872 1.0483 15 6 5.2794 -2.6006 0.9091 16 7 6.6749 -2.1551 0.8951 17 6 7.6691 -3.0570 0.7744 18 8 7.4080 -4.2405 0.6822 19 6 9.0787 -2.6064 0.7541 20 7 9.5177 -1.3417 0.8463 21 7 10.8057 -1.3787 0.7889 22 7 11.1845 -2.6027 0.6654 23 6 12.5751 -3.0533 0.5680 24 6 13.5091 -1.8434 0.6351 25 6 12.8860 -4.0025 1.7270 26 6 12.7823 -3.7846 -0.7598 27 7 10.1495 -3.3703 0.6464 28 1 -0.3633 0.5955 0.8376 29 1 -0.3633 0.4278 -0.9344 30 1 -0.3634 -1.0231 0.0968 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4424 -0.0079 33 1 1.6703 1.9585 -0.8860 34 1 1.6832 1.9541 0.8938 35 1 0.8797 -3.0448 3.8510 36 1 2.6764 -2.3735 0.1315 37 1 2.7427 -2.5274 1.9035 38 1 4.5820 -0.8661 1.9791 39 1 4.5158 -0.7123 0.2070 40 1 5.0555 -3.1221 -0.0216 41 1 5.1215 -3.2752 1.7506 42 1 6.8833 -1.2106 0.9683 43 1 13.3614 -1.3223 1.5810 44 1 14.5437 -2.1786 0.5621 45 1 13.2875 -1.1672 -0.1906 46 1 12.2205 -4.8645 1.6792 47 1 13.9205 -4.3381 1.6542 48 1 12.7383 -3.4816 2.6730 49 1 12.5608 -3.1084 -1.5855 50 1 13.8169 -4.1202 -0.8321 51 1 12.1169 -4.6466 -0.8075 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267264504.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:45 Heat of formation + Delta-G solvation = 99.040964 kcal Electronic energy + Delta-G solvation = -29376.248904 eV Core-core repulsion = 25349.478365 eV Total energy + Delta-G solvation = -4026.770539 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.217 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -44.63722 -39.53623 -38.03022 -36.75943 -35.12344 -33.73106 -32.85043 -32.39395 -31.41751 -28.88428 -28.19714 -28.15508 -26.18292 -26.12293 -24.79293 -24.56429 -22.93759 -21.20352 -20.87985 -20.54360 -19.48132 -18.04510 -17.62875 -16.99936 -16.38661 -15.70342 -15.47250 -14.96096 -14.82507 -14.68909 -14.36818 -14.16908 -13.98839 -13.73114 -13.49214 -13.35355 -13.08674 -12.96837 -12.80811 -12.45958 -12.44822 -12.40516 -12.11297 -11.74412 -11.71102 -11.48767 -11.42930 -11.28416 -11.25385 -11.21960 -10.95531 -10.71242 -10.63610 -10.56300 -10.44036 -10.31535 -10.10653 -9.88725 -9.55652 -9.47207 -8.95438 -8.42705 -6.50404 -5.74305 -3.31740 0.83096 1.32472 1.39687 2.81237 3.09026 3.37969 3.46536 3.49119 3.62559 3.91364 3.93564 4.02956 4.39873 4.51472 4.81678 4.83409 4.84443 5.00216 5.03747 5.05646 5.08524 5.24705 5.32422 5.40186 5.42785 5.48765 5.61112 5.65954 5.78746 5.85657 5.98964 6.03684 6.19914 6.31005 6.38322 6.42289 6.47850 6.68743 6.73650 6.75970 6.83791 6.85445 7.14969 7.24642 7.38596 7.44812 7.70403 7.88906 7.97128 8.12250 8.58263 9.24880 9.87448 10.46697 11.25856 Molecular weight = 338.22amu Principal moments of inertia in cm(-1) A = 0.016440 B = 0.002135 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.753631 B =13111.497926 C =13662.978330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.162 3.838 3 C -0.154 4.154 4 N -0.579 5.579 5 C -0.252 4.252 6 H 0.059 0.941 7 C 0.013 3.987 8 N -0.886 5.886 9 Si 0.891 3.109 10 H -0.287 1.287 11 H -0.290 1.290 12 H -0.278 1.278 13 C 0.153 3.847 14 C -0.147 4.147 15 C 0.121 3.879 16 N -0.699 5.699 17 C 0.610 3.390 18 O -0.512 6.512 19 C 0.130 3.870 20 N -0.256 5.256 21 N -0.057 5.057 22 N -0.127 5.127 23 C 0.176 3.824 24 C -0.153 4.153 25 C -0.161 4.161 26 C -0.160 4.160 27 N -0.247 5.247 28 H 0.053 0.947 29 H 0.028 0.972 30 H 0.051 0.949 31 H 0.045 0.955 32 H 0.043 0.957 33 H 0.035 0.965 34 H 0.053 0.947 35 H 0.254 0.746 36 H 0.026 0.974 37 H 0.095 0.905 38 H 0.068 0.932 39 H 0.052 0.948 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.410 0.590 43 H 0.076 0.924 44 H 0.091 0.909 45 H 0.076 0.924 46 H 0.079 0.921 47 H 0.092 0.908 48 H 0.069 0.931 49 H 0.068 0.932 50 H 0.092 0.908 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.868 -0.816 -7.217 25.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.055 3.945 3 C -0.213 4.213 4 N -0.299 5.299 5 C -0.382 4.382 6 H 0.076 0.924 7 C -0.187 4.187 8 N -0.528 5.528 9 Si 0.720 3.280 10 H -0.214 1.214 11 H -0.216 1.216 12 H -0.204 1.204 13 C 0.025 3.975 14 C -0.188 4.188 15 C -0.001 4.001 16 N -0.350 5.350 17 C 0.389 3.611 18 O -0.384 6.384 19 C -0.154 4.154 20 N -0.131 5.131 21 N -0.049 5.049 22 N -0.041 5.041 23 C 0.096 3.904 24 C -0.211 4.211 25 C -0.219 4.219 26 C -0.219 4.219 27 N -0.100 5.100 28 H 0.072 0.928 29 H 0.047 0.953 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.044 0.956 37 H 0.112 0.888 38 H 0.086 0.914 39 H 0.071 0.929 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.245 0.755 43 H 0.096 0.904 44 H 0.109 0.891 45 H 0.095 0.905 46 H 0.098 0.902 47 H 0.111 0.889 48 H 0.088 0.912 49 H 0.087 0.913 50 H 0.111 0.889 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 25.066 -1.447 -7.163 26.110 hybrid contribution -0.167 0.422 1.075 1.167 sum 24.899 -1.025 -6.088 25.653 Atomic orbital electron populations 1.22060 0.97898 1.01557 0.98915 1.20415 0.92440 0.91801 0.89818 1.22182 1.00154 0.98970 1.00002 1.43830 1.51684 1.33272 1.01081 1.18872 1.41410 0.91255 0.86647 0.92355 1.25162 0.98567 0.96423 0.98581 1.70000 1.47006 1.04174 1.31629 0.86506 0.77982 0.77775 0.85745 1.21395 1.21577 1.20390 1.20780 0.84824 0.90870 1.00999 1.22544 0.98572 0.95777 1.01876 1.21655 0.77174 0.98867 1.02440 1.45944 1.06549 1.10469 1.72070 1.16170 0.80682 0.85863 0.78372 1.90853 1.82557 1.15887 1.49146 1.25461 0.96778 0.87025 1.06177 1.76154 1.00664 1.19623 1.16615 1.78876 1.06700 1.04102 1.15247 1.50755 1.09017 1.02338 1.42035 1.21523 0.72056 0.97335 0.99498 1.22111 0.98405 0.95702 1.04910 1.22269 1.04056 0.99381 0.96226 1.22263 1.04417 1.01435 0.93770 1.74987 0.93394 1.23401 1.18174 0.92793 0.95317 0.93008 0.93686 0.93814 0.94631 0.92787 0.93633 0.95595 0.88754 0.91367 0.92945 0.91339 0.90831 0.75491 0.90449 0.89064 0.90464 0.90156 0.88931 0.91234 0.91253 0.88932 0.90174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 9.03 37.16 0.34 -2.61 16 2 C 0.16 3.32 3.36 -67.93 -0.23 3.09 16 3 C -0.15 -2.81 9.20 37.16 0.34 -2.47 16 4 N -0.58 -13.58 2.36 -165.66 -0.39 -13.97 16 5 C -0.25 -6.55 8.23 -15.06 -0.12 -6.67 16 6 H 0.06 1.54 6.95 -52.48 -0.36 1.17 16 7 C 0.01 0.35 4.94 -17.43 -0.09 0.26 16 8 N -0.89 -24.85 11.52 55.49 0.64 -24.21 16 9 Si 0.89 21.29 29.61 -169.99 -5.03 16.26 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 C 0.15 3.35 5.27 -4.04 -0.02 3.33 16 14 C -0.15 -2.67 5.65 -26.73 -0.15 -2.82 16 15 C 0.12 2.01 5.67 -4.04 -0.02 1.98 16 16 N -0.70 -10.58 5.55 -61.20 -0.34 -10.92 16 17 C 0.61 10.03 7.84 -12.26 -0.10 9.93 16 18 O -0.51 -9.88 17.10 5.33 0.09 -9.79 16 19 C 0.13 1.95 8.14 -156.25 -1.27 0.68 16 20 N -0.26 -3.65 12.26 32.09 0.39 -3.26 16 21 N -0.06 -0.71 12.21 60.35 0.74 0.03 16 22 N -0.13 -1.39 3.72 0.53 0.00 -1.39 16 23 C 0.18 1.13 1.30 -131.82 -0.17 0.96 16 24 C -0.15 -0.67 7.90 37.16 0.29 -0.38 16 25 C -0.16 -0.84 8.66 37.16 0.32 -0.52 16 26 C -0.16 -0.81 8.66 37.16 0.32 -0.49 16 27 N -0.25 -3.40 11.85 32.11 0.38 -3.02 16 28 H 0.05 1.16 7.80 -51.93 -0.40 0.75 16 29 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.04 0.87 7.78 -51.93 -0.40 0.47 16 32 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.05 1.05 7.06 -51.93 -0.37 0.68 16 35 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 36 H 0.03 0.55 7.90 -51.93 -0.41 0.13 16 37 H 0.09 2.38 5.56 -51.93 -0.29 2.09 16 38 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 41 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.41 5.57 8.22 -40.82 -0.34 5.24 16 43 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.09 0.15 8.14 -51.93 -0.42 -0.28 16 45 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 48 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 50 H 0.09 0.19 8.14 -51.92 -0.42 -0.23 16 51 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 419.35 15.07 6.32 6.32 Total: -1.00 -31.58 419.35 -6.65 -38.23 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -8.90 Total: 1.43 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: -0.56 Total: 4.29 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: 1.42 Total: -56.75 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.09 Total: -9.79 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -31.58 -6.65 -38.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267264504.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.274 kcal (2) G-P(sol) polarization free energy of solvation -31.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds