Wall clock time and date at job start Tue Mar 31 2020 21:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47263 * 2 1 4 4 N 1.46497 * 109.46889 * 119.99938 * 2 1 3 5 5 C 1.36937 * 120.00374 * 302.23987 * 4 2 1 6 6 H 1.08009 * 119.99414 * 321.91725 * 5 4 2 7 7 C 1.38806 * 120.00285 * 141.91011 * 5 4 2 8 8 N 1.31621 * 120.00113 * 338.46316 * 7 5 4 9 9 Si 1.86803 * 120.00035 * 158.45681 * 7 5 4 10 10 H 1.48503 * 109.47070 * 90.00374 * 9 7 5 11 11 H 1.48493 * 109.47346 * 210.00425 * 9 7 5 12 12 H 1.48501 * 109.47173 * 330.00432 * 9 7 5 13 13 C 1.46502 * 119.99707 * 122.23853 * 4 2 1 14 14 C 1.53002 * 109.46846 * 90.00171 * 13 4 2 15 15 C 1.53003 * 109.46926 * 179.97438 * 14 13 4 16 16 N 1.46498 * 109.47029 * 179.97438 * 15 14 13 17 17 C 1.34777 * 119.99882 * 180.27188 * 16 15 14 18 18 O 1.21541 * 119.99736 * 359.72937 * 17 16 15 19 19 C 1.48001 * 120.00046 * 179.72362 * 17 16 15 20 20 N 1.34181 * 126.69772 * 0.02642 * 19 17 16 21 21 N 1.28986 * 107.25286 * 179.97438 * 20 19 17 22 22 N 1.28721 * 108.98712 * 0.02562 * 21 20 19 23 23 C 1.46502 * 125.31891 * 180.02562 * 22 21 20 24 24 C 1.53001 * 109.47187 * 359.97438 * 23 22 21 25 25 C 1.53005 * 109.46945 * 119.97559 * 23 22 21 26 26 C 1.52996 * 109.46937 * 239.97708 * 23 22 21 27 27 N 1.28866 * 109.35623 * 359.76566 * 22 21 20 28 28 H 1.09005 * 109.47017 * 305.40780 * 1 2 3 29 29 H 1.09000 * 109.46957 * 65.40304 * 1 2 3 30 30 H 1.09000 * 109.47720 * 185.40329 * 1 2 3 31 31 H 1.09001 * 109.46714 * 239.99723 * 2 1 3 32 32 H 1.08996 * 109.47079 * 180.43896 * 3 2 1 33 33 H 1.09000 * 109.47041 * 300.43651 * 3 2 1 34 34 H 1.08998 * 109.47432 * 60.43596 * 3 2 1 35 35 H 0.96993 * 119.99821 * 179.97438 * 8 7 5 36 36 H 1.08998 * 109.47004 * 329.99703 * 13 4 2 37 37 H 1.09002 * 109.47178 * 209.99853 * 13 4 2 38 38 H 1.09003 * 109.47266 * 59.99808 * 14 13 4 39 39 H 1.08995 * 109.46734 * 299.99474 * 14 13 4 40 40 H 1.09003 * 109.47260 * 59.99859 * 15 14 13 41 41 H 1.09002 * 109.47182 * 299.99735 * 15 14 13 42 42 H 0.96999 * 120.00321 * 359.97438 * 16 15 14 43 43 H 1.08998 * 109.47180 * 59.99781 * 24 23 22 44 44 H 1.09002 * 109.46784 * 180.02562 * 24 23 22 45 45 H 1.08999 * 109.46789 * 300.00062 * 24 23 22 46 46 H 1.09000 * 109.46984 * 59.99955 * 25 23 22 47 47 H 1.09003 * 109.46639 * 179.97438 * 25 23 22 48 48 H 1.08998 * 109.47166 * 300.00062 * 25 23 22 49 49 H 1.08999 * 109.47699 * 60.00132 * 26 23 22 50 50 H 1.09007 * 109.46934 * 180.02562 * 26 23 22 51 51 H 1.08998 * 109.46856 * 299.99662 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6501 -0.2502 2.4394 6 1 1.5673 0.8090 2.6344 7 6 1.3831 -1.1647 3.4488 8 7 1.0659 -2.4056 3.1456 9 14 1.4741 -0.6344 5.2377 10 1 0.1444 -0.1389 5.6754 11 1 1.8718 -1.7926 6.0777 12 1 2.4785 0.4498 5.3821 13 6 2.9005 -1.8525 1.0623 14 6 4.3580 -1.3872 1.0483 15 6 5.2794 -2.6006 0.9091 16 7 6.6749 -2.1551 0.8951 17 6 7.6691 -3.0570 0.7744 18 8 7.4080 -4.2405 0.6822 19 6 9.0787 -2.6064 0.7541 20 7 9.5177 -1.3417 0.8463 21 7 10.8057 -1.3787 0.7889 22 7 11.1845 -2.6027 0.6654 23 6 12.5751 -3.0533 0.5680 24 6 13.5091 -1.8434 0.6351 25 6 12.8860 -4.0025 1.7270 26 6 12.7823 -3.7846 -0.7598 27 7 10.1495 -3.3703 0.6464 28 1 -0.3633 0.5955 0.8376 29 1 -0.3633 0.4278 -0.9344 30 1 -0.3634 -1.0231 0.0968 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4424 -0.0079 33 1 1.6703 1.9585 -0.8860 34 1 1.6832 1.9541 0.8938 35 1 0.8797 -3.0448 3.8510 36 1 2.6764 -2.3735 0.1315 37 1 2.7427 -2.5274 1.9035 38 1 4.5820 -0.8661 1.9791 39 1 4.5158 -0.7123 0.2070 40 1 5.0555 -3.1221 -0.0216 41 1 5.1215 -3.2752 1.7506 42 1 6.8833 -1.2106 0.9683 43 1 13.3614 -1.3223 1.5810 44 1 14.5437 -2.1786 0.5621 45 1 13.2875 -1.1672 -0.1906 46 1 12.2205 -4.8645 1.6792 47 1 13.9205 -4.3381 1.6542 48 1 12.7383 -3.4816 2.6730 49 1 12.5608 -3.1084 -1.5855 50 1 13.8169 -4.1202 -0.8321 51 1 12.1169 -4.6466 -0.8075 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267264504.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:40 Heat of formation + Delta-G solvation = 78.761588 kcal Electronic energy + Delta-G solvation = -29377.128284 eV Core-core repulsion = 25349.478365 eV Total energy + Delta-G solvation = -4027.649919 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.217 amu Computer time = 3.26 seconds Orbital eigenvalues (eV) -45.63855 -40.85894 -38.65939 -38.47453 -36.55290 -34.72784 -34.28108 -33.83691 -32.97272 -30.56382 -28.66129 -28.54970 -27.70609 -27.60490 -26.17395 -25.64666 -24.48747 -22.43543 -22.17980 -21.60879 -21.25845 -19.14190 -18.59793 -18.18619 -17.73893 -17.18356 -16.95812 -16.60030 -16.02496 -15.73501 -15.33542 -15.28564 -15.24038 -15.04049 -14.88627 -14.50426 -14.09341 -14.04230 -13.50577 -13.32279 -13.30987 -13.24102 -13.23310 -13.14738 -12.86016 -12.82679 -12.72770 -12.65781 -12.46923 -12.38887 -12.35278 -12.14135 -12.13599 -12.12283 -11.94288 -11.68208 -11.61964 -11.50854 -11.28618 -11.18828 -10.43255 -10.30228 -8.44853 -7.74142 -5.35002 -0.20419 0.21182 0.61278 1.45475 1.50210 1.57429 1.64665 1.82955 2.55062 2.75647 2.92646 3.32416 3.47103 3.55120 3.62581 3.63553 3.94168 4.19346 4.24924 4.30185 4.39392 4.40138 4.51390 4.53964 4.57353 4.59298 4.66636 4.71714 4.72038 4.76208 4.83684 4.89378 4.99967 5.01040 5.09897 5.11785 5.15777 5.18666 5.21070 5.21974 5.25219 5.28188 5.52295 5.65447 5.71922 5.79264 5.92928 6.18154 6.57273 6.78598 7.00093 7.27572 7.98095 8.50420 9.21322 Molecular weight = 338.22amu Principal moments of inertia in cm(-1) A = 0.016440 B = 0.002135 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.753631 B =13111.497926 C =13662.978330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.152 3.848 3 C -0.143 4.143 4 N -0.593 5.593 5 C -0.244 4.244 6 H 0.054 0.946 7 C -0.035 4.035 8 N -0.916 5.916 9 Si 0.943 3.057 10 H -0.288 1.288 11 H -0.296 1.296 12 H -0.272 1.272 13 C 0.152 3.848 14 C -0.125 4.125 15 C 0.133 3.867 16 N -0.688 5.688 17 C 0.614 3.386 18 O -0.546 6.546 19 C 0.114 3.886 20 N -0.267 5.267 21 N -0.057 5.057 22 N -0.108 5.108 23 C 0.158 3.842 24 C -0.150 4.150 25 C -0.158 4.158 26 C -0.157 4.157 27 N -0.257 5.257 28 H 0.034 0.966 29 H 0.064 0.936 30 H 0.024 0.976 31 H 0.060 0.940 32 H 0.047 0.953 33 H 0.065 0.935 34 H 0.036 0.964 35 H 0.248 0.752 36 H 0.031 0.969 37 H 0.061 0.939 38 H 0.054 0.946 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.057 0.943 42 H 0.419 0.581 43 H 0.069 0.931 44 H 0.128 0.872 45 H 0.070 0.930 46 H 0.062 0.938 47 H 0.130 0.870 48 H 0.060 0.940 49 H 0.063 0.937 50 H 0.130 0.870 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.510 0.343 -8.335 28.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.046 3.954 3 C -0.202 4.202 4 N -0.314 5.314 5 C -0.375 4.375 6 H 0.072 0.928 7 C -0.232 4.232 8 N -0.560 5.560 9 Si 0.772 3.228 10 H -0.215 1.215 11 H -0.223 1.223 12 H -0.197 1.197 13 C 0.025 3.975 14 C -0.165 4.165 15 C 0.010 3.990 16 N -0.339 5.339 17 C 0.394 3.606 18 O -0.421 6.421 19 C -0.169 4.169 20 N -0.142 5.142 21 N -0.049 5.049 22 N -0.025 5.025 23 C 0.080 3.920 24 C -0.208 4.208 25 C -0.217 4.217 26 C -0.216 4.216 27 N -0.111 5.111 28 H 0.053 0.947 29 H 0.083 0.917 30 H 0.043 0.957 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.049 0.951 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.076 0.924 42 H 0.256 0.744 43 H 0.088 0.912 44 H 0.146 0.854 45 H 0.089 0.911 46 H 0.081 0.919 47 H 0.149 0.851 48 H 0.079 0.921 49 H 0.082 0.918 50 H 0.148 0.852 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 27.729 -0.231 -8.293 28.943 hybrid contribution -0.873 0.063 1.336 1.597 sum 26.856 -0.168 -6.957 27.743 Atomic orbital electron populations 1.21970 0.97887 0.99711 1.00006 1.20665 0.92523 0.93091 0.89100 1.22035 1.00358 0.97156 1.00603 1.44061 1.52383 1.33550 1.01376 1.19004 1.39709 0.90966 0.87833 0.92837 1.25729 0.99397 0.96622 1.01499 1.70123 1.48933 1.04988 1.31997 0.85668 0.77784 0.77120 0.82212 1.21463 1.22298 1.19743 1.20683 0.86865 0.90223 0.99763 1.22188 0.96300 0.96192 1.01835 1.21396 0.77686 0.97844 1.02113 1.45752 1.05821 1.10865 1.71502 1.16265 0.81388 0.85373 0.77545 1.90829 1.83248 1.17215 1.50809 1.25108 0.96335 0.87597 1.07904 1.76117 1.01474 1.19375 1.17202 1.78804 1.05999 1.04771 1.15301 1.51357 1.09934 1.01608 1.39640 1.22253 0.70050 0.98830 1.00861 1.22185 0.99752 0.94627 1.04208 1.22321 1.05953 0.98195 0.95190 1.22313 1.06358 1.00372 0.92514 1.74951 0.93834 1.23973 1.18328 0.94665 0.91728 0.95713 0.92171 0.93382 0.91611 0.94496 0.94307 0.95079 0.92130 0.92751 0.91168 0.90736 0.92416 0.74388 0.91231 0.85363 0.91056 0.91877 0.85128 0.92054 0.91840 0.85158 0.91857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.40 9.03 71.98 0.65 -4.75 16 2 C 0.15 6.00 3.36 44.99 0.15 6.15 16 3 C -0.14 -4.86 9.20 71.98 0.66 -4.20 16 4 N -0.59 -27.75 2.36 -678.03 -1.60 -29.35 16 5 C -0.24 -12.78 8.23 84.03 0.69 -12.09 16 6 H 0.05 2.83 6.95 -2.91 -0.02 2.81 16 7 C -0.04 -1.93 4.94 84.86 0.42 -1.51 16 8 N -0.92 -52.90 11.52 21.65 0.25 -52.65 16 9 Si 0.94 44.53 29.61 68.60 2.03 46.56 16 10 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 11 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 12 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 13 C 0.15 6.71 5.27 86.38 0.46 7.17 16 14 C -0.12 -4.47 5.65 30.60 0.17 -4.29 16 15 C 0.13 4.40 5.67 86.38 0.49 4.89 16 16 N -0.69 -20.69 5.55 -465.81 -2.59 -23.27 16 17 C 0.61 20.36 7.84 86.83 0.68 21.05 16 18 O -0.55 -21.49 17.10 -3.85 -0.07 -21.55 16 19 C 0.11 3.44 8.14 137.15 1.12 4.55 16 20 N -0.27 -7.52 12.26 -52.37 -0.64 -8.16 16 21 N -0.06 -1.37 12.21 37.02 0.45 -0.92 16 22 N -0.11 -2.30 3.72 -152.25 -0.57 -2.86 16 23 C 0.16 1.72 1.30 3.60 0.00 1.73 16 24 C -0.15 -0.91 7.90 71.98 0.57 -0.34 16 25 C -0.16 -1.33 8.66 71.98 0.62 -0.71 16 26 C -0.16 -1.23 8.66 71.98 0.62 -0.61 16 27 N -0.26 -7.05 11.85 -52.32 -0.62 -7.67 16 28 H 0.03 1.48 7.80 -2.38 -0.02 1.46 16 29 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.06 2.19 7.78 -2.39 -0.02 2.17 16 32 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.04 1.37 7.06 -2.39 -0.02 1.35 16 35 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 36 H 0.03 1.31 7.90 -2.39 -0.02 1.29 16 37 H 0.06 3.15 5.56 -2.39 -0.01 3.14 16 38 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 41 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.42 11.11 8.22 -92.71 -0.76 10.35 16 43 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 44 H 0.13 -0.15 8.14 -2.39 -0.02 -0.17 16 45 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 46 H 0.06 0.77 8.14 -2.39 -0.02 0.76 16 47 H 0.13 0.09 8.14 -2.39 -0.02 0.07 16 48 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 49 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 50 H 0.13 0.03 8.14 -2.38 -0.02 0.01 16 51 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -70.21 419.35 4.11 -66.10 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: 0.15 Total: 16.73 kcal Atomic # 6 Polarization: 9.73 SS G_CDS: 7.31 Total: 17.04 kcal Atomic # 7 Polarization: -119.56 SS G_CDS: -5.31 Total: -124.88 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -0.07 Total: -21.55 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -70.21 4.11 -66.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267264504.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.858 kcal (2) G-P(sol) polarization free energy of solvation -70.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.26 seconds