Wall clock time and date at job start Tue Mar 31 2020 20:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46502 * 119.99702 * 2 1 4 4 C 1.53005 * 109.46713 * 269.99471 * 3 2 1 5 5 N 1.46902 * 109.46916 * 180.02562 * 4 3 2 6 6 C 1.46894 * 110.99986 * 294.30262 * 5 4 3 7 7 C 1.53245 * 109.33890 * 172.74829 * 6 5 4 8 8 N 1.47079 * 108.52173 * 53.83036 * 7 6 5 9 9 C 1.36936 * 120.87859 * 128.79410 * 8 7 6 10 10 H 1.08006 * 119.99550 * 202.06269 * 9 8 7 11 11 C 1.38804 * 120.00116 * 22.06037 * 9 8 7 12 12 N 1.31620 * 120.00361 * 31.25742 * 11 9 8 13 13 Si 1.86808 * 119.99833 * 211.25524 * 11 9 8 14 14 H 1.48508 * 109.46846 * 94.97189 * 13 11 9 15 15 H 1.48501 * 109.47097 * 214.96811 * 13 11 9 16 16 H 1.48494 * 109.47261 * 334.97297 * 13 11 9 17 17 C 1.47079 * 118.23603 * 308.81576 * 8 7 6 18 18 C 1.46899 * 110.99707 * 170.00153 * 5 4 3 19 19 C 1.34771 * 119.99955 * 179.97438 * 2 1 3 20 20 O 1.21287 * 119.99604 * 174.61417 * 19 2 1 21 21 C 1.50697 * 120.00384 * 354.62259 * 19 2 1 22 22 H 1.09000 * 109.40025 * 24.56272 * 21 19 2 23 23 C 1.53077 * 109.39809 * 264.74310 * 21 19 2 24 24 C 1.53344 * 108.42549 * 190.97040 * 23 21 19 25 25 C 1.52917 * 108.67671 * 67.52093 * 24 23 21 26 26 N 1.45746 * 110.49318 * 309.25247 * 25 24 23 27 27 C 1.33239 * 124.06938 * 19.15083 * 26 25 24 28 28 O 1.21282 * 118.16049 * 177.70916 * 27 26 25 29 29 H 1.09000 * 109.47055 * 95.21993 * 1 2 3 30 30 H 1.09001 * 109.46980 * 215.22128 * 1 2 3 31 31 H 1.09000 * 109.47114 * 335.21982 * 1 2 3 32 32 H 1.08999 * 109.47097 * 150.00245 * 3 2 1 33 33 H 1.08994 * 109.47530 * 29.99731 * 3 2 1 34 34 H 1.09002 * 109.47169 * 60.00754 * 4 3 2 35 35 H 1.08994 * 109.47336 * 300.00380 * 4 3 2 36 36 H 1.09002 * 109.49426 * 292.70669 * 6 5 4 37 37 H 1.08996 * 109.49623 * 52.79250 * 6 5 4 38 38 H 1.09001 * 109.62753 * 294.11978 * 7 6 5 39 39 H 1.09000 * 109.63020 * 173.54068 * 7 6 5 40 40 H 0.96998 * 119.99763 * 179.97438 * 12 11 9 41 41 H 1.08999 * 109.62914 * 291.47547 * 17 8 7 42 42 H 1.09002 * 109.62890 * 170.89401 * 17 8 7 43 43 H 1.08994 * 109.49778 * 307.21225 * 18 5 4 44 44 H 1.09004 * 109.49332 * 67.29691 * 18 5 4 45 45 H 1.09000 * 109.66790 * 310.70151 * 23 21 19 46 46 H 1.08993 * 109.67541 * 71.19187 * 23 21 19 47 47 H 1.08994 * 109.60164 * 187.28337 * 24 23 21 48 48 H 1.09006 * 109.60093 * 307.76918 * 24 23 21 49 49 H 1.09010 * 109.29366 * 69.56521 * 25 24 23 50 50 H 1.09001 * 109.30328 * 189.13991 * 25 24 23 51 51 H 0.96997 * 117.95281 * 199.07374 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7103 -1.4426 5 7 3.1875 2.9823 -1.4426 6 6 2.3687 4.0634 -0.8782 7 6 3.2266 5.3244 -0.7285 8 7 3.8445 5.6262 -2.0286 9 6 3.7488 6.8764 -2.5789 10 1 3.8750 7.0089 -3.6434 11 6 3.4895 7.9733 -1.7688 12 7 3.9209 7.9899 -0.5255 13 14 2.5283 9.4261 -2.4434 14 1 1.0928 9.2750 -2.0941 15 1 3.0518 10.6836 -1.8519 16 1 2.6759 9.4746 -3.9202 17 6 4.5675 4.5494 -2.7221 18 6 3.6569 3.3189 -2.7933 19 6 2.1389 -1.1672 0.0005 20 8 3.3477 -1.1694 -0.0981 21 6 1.3904 -2.4693 0.1234 22 1 0.3679 -2.3339 -0.2289 23 6 1.3689 -2.9069 1.5901 24 6 0.8534 -4.3495 1.6580 25 6 1.8888 -5.2705 1.0115 26 7 2.2650 -4.7707 -0.3049 27 6 2.0709 -3.5165 -0.7106 28 8 2.4641 -3.2047 -1.8147 29 1 -0.3633 -0.0935 -1.0234 30 1 -0.3633 -0.8395 0.5927 31 1 -0.3633 0.9330 0.4307 32 1 3.1499 1.1385 0.5138 33 1 1.6084 2.0284 0.5137 34 1 1.5001 1.8407 -1.9564 35 1 3.0416 0.9507 -1.9563 36 1 1.5307 4.2705 -1.5438 37 1 1.9917 3.7619 0.0991 38 1 4.0044 5.1519 0.0154 39 1 2.5986 6.1598 -0.4188 40 1 3.7400 8.7566 0.0404 41 1 5.4742 4.3024 -2.1698 42 1 4.8262 4.8723 -3.7305 43 1 4.2141 2.4775 -3.2050 44 1 2.8010 3.5364 -3.4322 45 1 2.3767 -2.8576 2.0025 46 1 0.7076 -2.2531 2.1585 47 1 0.7075 -4.6371 2.6992 48 1 -0.0911 -4.4260 1.1192 49 1 2.7743 -5.3181 1.6455 50 1 1.4666 -6.2700 0.9070 51 1 2.6836 -5.3895 -0.9236 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267572902.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:27 Heat of formation + Delta-G solvation = -28.757990 kcal Electronic energy + Delta-G solvation = -30343.684570 eV Core-core repulsion = 26279.079501 eV Total energy + Delta-G solvation = -4064.605069 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.27112 -39.38240 -38.05113 -36.87966 -35.86689 -34.38661 -33.54710 -31.57841 -30.51106 -29.93438 -29.11330 -26.98088 -26.16262 -25.10386 -23.46520 -23.11810 -22.55192 -21.58032 -20.09724 -19.09492 -19.02907 -17.89211 -17.39468 -16.94728 -16.70487 -16.01338 -15.60923 -15.26353 -14.90380 -14.56756 -14.52781 -14.42151 -14.32789 -13.95553 -13.73244 -13.53523 -13.45333 -13.44089 -13.20561 -12.91633 -12.78388 -12.40167 -12.18668 -12.02959 -11.85611 -11.79598 -11.55774 -11.35329 -11.19844 -10.90187 -10.69008 -10.38097 -10.28230 -10.11452 -10.04278 -9.90454 -9.66531 -9.58849 -9.47027 -8.82437 -8.39169 -7.76808 -6.73441 -5.80027 -3.06373 2.20057 2.34166 2.78412 3.00924 3.40906 3.49667 3.51295 3.94405 4.06497 4.15116 4.20763 4.44038 4.50976 4.57735 4.66849 4.79402 4.81771 4.97941 5.07049 5.10440 5.14981 5.23536 5.28346 5.31797 5.37153 5.40862 5.47575 5.58227 5.64368 5.87728 5.94792 6.04708 6.12522 6.19952 6.25414 6.33701 6.38543 6.43394 6.55971 6.71840 6.89060 6.98385 7.15974 7.21413 7.55454 7.65339 7.73226 7.85604 7.88204 8.02221 8.40599 9.20740 9.88736 10.47121 11.29038 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.029278 B = 0.002120 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.123104 B =13205.224903 C =13600.750712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.613 5.613 3 C 0.121 3.879 4 C 0.043 3.957 5 N -0.530 5.530 6 C 0.034 3.966 7 C 0.177 3.823 8 N -0.594 5.594 9 C -0.257 4.257 10 H 0.068 0.932 11 C 0.004 3.996 12 N -0.888 5.888 13 Si 0.887 3.113 14 H -0.289 1.289 15 H -0.293 1.293 16 H -0.279 1.279 17 C 0.149 3.851 18 C 0.047 3.953 19 C 0.533 3.467 20 O -0.514 6.514 21 C -0.127 4.127 22 H 0.123 0.877 23 C -0.113 4.113 24 C -0.135 4.135 25 C 0.107 3.893 26 N -0.720 5.720 27 C 0.537 3.463 28 O -0.534 6.534 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.025 0.975 35 H 0.073 0.927 36 H 0.026 0.974 37 H 0.061 0.939 38 H 0.028 0.972 39 H 0.079 0.921 40 H 0.253 0.747 41 H 0.027 0.973 42 H 0.056 0.944 43 H 0.063 0.937 44 H 0.027 0.973 45 H 0.081 0.919 46 H 0.084 0.916 47 H 0.092 0.908 48 H 0.076 0.924 49 H 0.069 0.931 50 H 0.079 0.921 51 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.867 -28.029 7.689 31.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.348 5.348 3 C -0.001 4.001 4 C -0.086 4.086 5 N -0.255 5.255 6 C -0.095 4.095 7 C 0.051 3.949 8 N -0.318 5.318 9 C -0.386 4.386 10 H 0.086 0.914 11 C -0.195 4.195 12 N -0.531 5.531 13 Si 0.716 3.284 14 H -0.216 1.216 15 H -0.220 1.220 16 H -0.204 1.204 17 C 0.022 3.978 18 C -0.082 4.082 19 C 0.318 3.682 20 O -0.388 6.388 21 C -0.151 4.151 22 H 0.141 0.859 23 C -0.151 4.151 24 C -0.173 4.173 25 C -0.017 4.017 26 N -0.373 5.373 27 C 0.322 3.678 28 O -0.409 6.409 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.111 0.889 33 H 0.099 0.901 34 H 0.044 0.956 35 H 0.091 0.909 36 H 0.044 0.956 37 H 0.079 0.921 38 H 0.046 0.954 39 H 0.097 0.903 40 H 0.063 0.937 41 H 0.045 0.955 42 H 0.075 0.925 43 H 0.081 0.919 44 H 0.046 0.954 45 H 0.100 0.900 46 H 0.103 0.897 47 H 0.110 0.890 48 H 0.094 0.906 49 H 0.087 0.913 50 H 0.098 0.902 51 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -10.685 -27.593 7.618 30.554 hybrid contribution -1.329 0.596 -0.967 1.748 sum -12.013 -26.996 6.652 30.288 Atomic orbital electron populations 1.21898 0.79569 1.03407 1.02077 1.47778 1.06959 1.06125 1.73894 1.21563 0.97983 0.82909 0.97650 1.22372 0.96732 0.93179 0.96331 1.61863 1.39005 1.01738 1.22907 1.22914 0.95509 0.93516 0.97577 1.20791 0.94486 0.92278 0.87396 1.44211 1.59742 1.07190 1.20627 1.19159 1.44496 0.83361 0.91589 0.91381 1.24791 1.01447 0.96864 0.96393 1.70254 1.43860 1.30648 1.08327 0.86496 0.80914 0.82252 0.78704 1.21601 1.21976 1.20389 1.20977 0.92968 0.87349 0.96459 1.22601 0.98570 0.98983 0.88089 1.19722 0.87692 0.84190 0.76551 1.90773 1.13903 1.86709 1.47449 1.21457 1.02098 0.93345 0.98246 0.85896 1.21629 1.03822 0.96908 0.92782 1.21888 0.98717 0.94195 1.02459 1.21435 0.98588 0.97796 0.83901 1.45321 1.63308 1.11408 1.17262 1.19283 0.78927 0.82716 0.86881 1.90819 1.49401 1.79095 1.21608 0.92338 0.91235 0.90207 0.88947 0.90124 0.95632 0.90851 0.95612 0.92073 0.95437 0.90278 0.93716 0.95535 0.92515 0.91901 0.95425 0.89988 0.89697 0.88988 0.90555 0.91317 0.90244 0.76129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.53 9.87 59.85 0.59 1.12 16 2 N -0.61 -7.08 2.87 -181.57 -0.52 -7.61 16 3 C 0.12 1.68 5.34 -4.04 -0.02 1.66 16 4 C 0.04 0.70 5.29 -3.82 -0.02 0.68 16 5 N -0.53 -10.09 4.63 -234.32 -1.08 -11.18 16 6 C 0.03 0.67 5.46 -3.70 -0.02 0.65 16 7 C 0.18 4.32 5.59 -3.60 -0.02 4.30 16 8 N -0.59 -15.54 3.05 -172.01 -0.52 -16.06 16 9 C -0.26 -7.27 9.56 -15.06 -0.14 -7.41 16 10 H 0.07 1.90 7.97 -52.48 -0.42 1.49 16 11 C 0.00 0.13 4.56 -17.43 -0.08 0.05 16 12 N -0.89 -26.26 11.83 55.49 0.66 -25.60 16 13 Si 0.89 21.87 29.65 -169.99 -5.04 16.83 16 14 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 15 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 17 C 0.15 3.36 6.69 -3.60 -0.02 3.34 16 18 C 0.05 0.92 5.62 -3.70 -0.02 0.90 16 19 C 0.53 7.05 6.26 -10.99 -0.07 6.98 16 20 O -0.51 -9.26 15.83 -5.64 -0.09 -9.35 16 21 C -0.13 -1.15 2.03 -93.14 -0.19 -1.34 16 22 H 0.12 0.81 6.20 -51.93 -0.32 0.49 16 23 C -0.11 -0.64 5.31 -26.51 -0.14 -0.78 16 24 C -0.13 -0.40 6.02 -26.60 -0.16 -0.56 16 25 C 0.11 0.40 7.17 -4.49 -0.03 0.37 16 26 N -0.72 -5.40 5.44 -61.42 -0.33 -5.73 16 27 C 0.54 6.16 6.90 -11.92 -0.08 6.08 16 28 O -0.53 -8.84 16.94 -5.63 -0.10 -8.94 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.30 6.35 -51.93 -0.33 -0.03 16 31 H 0.08 0.50 7.83 -51.93 -0.41 0.09 16 32 H 0.09 1.47 7.50 -51.93 -0.39 1.08 16 33 H 0.08 1.00 6.12 -51.93 -0.32 0.68 16 34 H 0.03 0.40 8.12 -51.93 -0.42 -0.02 16 35 H 0.07 1.32 7.97 -51.93 -0.41 0.90 16 36 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 1.04 6.16 -51.93 -0.32 0.72 16 38 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 2.10 6.25 -51.93 -0.32 1.78 16 40 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 41 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 1.23 7.93 -51.93 -0.41 0.82 16 43 H 0.06 1.13 7.99 -51.93 -0.41 0.71 16 44 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.08 0.59 8.09 -51.93 -0.42 0.17 16 46 H 0.08 0.34 8.01 -51.93 -0.42 -0.08 16 47 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 48 H 0.08 0.18 8.12 -51.93 -0.42 -0.24 16 49 H 0.07 0.24 8.14 -51.92 -0.42 -0.18 16 50 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 51 H 0.40 2.70 8.80 -40.82 -0.36 2.34 16 LS Contribution 396.09 15.07 5.97 5.97 Total: -1.00 -37.78 396.09 -10.12 -47.90 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -8.62 Total: -2.26 kcal Atomic # 6 Polarization: 16.45 SS G_CDS: -0.43 Total: 16.02 kcal Atomic # 7 Polarization: -64.37 SS G_CDS: -1.81 Total: -66.18 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.18 Total: -18.28 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.04 Total: 16.83 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -37.78 -10.12 -47.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267572902.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.140 kcal (2) G-P(sol) polarization free energy of solvation -37.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds