Wall clock time and date at job start Tue Mar 31 2020 20:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46502 * 119.99702 * 2 1 4 4 C 1.53005 * 109.46713 * 269.99471 * 3 2 1 5 5 N 1.46902 * 109.46916 * 180.02562 * 4 3 2 6 6 C 1.46894 * 110.99986 * 294.30262 * 5 4 3 7 7 C 1.53245 * 109.33890 * 172.74829 * 6 5 4 8 8 N 1.47079 * 108.52173 * 53.83036 * 7 6 5 9 9 C 1.36936 * 120.87859 * 128.79410 * 8 7 6 10 10 H 1.08006 * 119.99550 * 202.06269 * 9 8 7 11 11 C 1.38804 * 120.00116 * 22.06037 * 9 8 7 12 12 N 1.31620 * 120.00361 * 31.25742 * 11 9 8 13 13 Si 1.86808 * 119.99833 * 211.25524 * 11 9 8 14 14 H 1.48508 * 109.46846 * 94.97189 * 13 11 9 15 15 H 1.48501 * 109.47097 * 214.96811 * 13 11 9 16 16 H 1.48494 * 109.47261 * 334.97297 * 13 11 9 17 17 C 1.47079 * 118.23603 * 308.81576 * 8 7 6 18 18 C 1.46899 * 110.99707 * 170.00153 * 5 4 3 19 19 C 1.34771 * 119.99955 * 179.97438 * 2 1 3 20 20 O 1.21287 * 119.99604 * 174.61417 * 19 2 1 21 21 C 1.50697 * 120.00384 * 354.62259 * 19 2 1 22 22 H 1.09000 * 109.40025 * 24.56272 * 21 19 2 23 23 C 1.53077 * 109.39809 * 264.74310 * 21 19 2 24 24 C 1.53344 * 108.42549 * 190.97040 * 23 21 19 25 25 C 1.52917 * 108.67671 * 67.52093 * 24 23 21 26 26 N 1.45746 * 110.49318 * 309.25247 * 25 24 23 27 27 C 1.33239 * 124.06938 * 19.15083 * 26 25 24 28 28 O 1.21282 * 118.16049 * 177.70916 * 27 26 25 29 29 H 1.09000 * 109.47055 * 95.21993 * 1 2 3 30 30 H 1.09001 * 109.46980 * 215.22128 * 1 2 3 31 31 H 1.09000 * 109.47114 * 335.21982 * 1 2 3 32 32 H 1.08999 * 109.47097 * 150.00245 * 3 2 1 33 33 H 1.08994 * 109.47530 * 29.99731 * 3 2 1 34 34 H 1.09002 * 109.47169 * 60.00754 * 4 3 2 35 35 H 1.08994 * 109.47336 * 300.00380 * 4 3 2 36 36 H 1.09002 * 109.49426 * 292.70669 * 6 5 4 37 37 H 1.08996 * 109.49623 * 52.79250 * 6 5 4 38 38 H 1.09001 * 109.62753 * 294.11978 * 7 6 5 39 39 H 1.09000 * 109.63020 * 173.54068 * 7 6 5 40 40 H 0.96998 * 119.99763 * 179.97438 * 12 11 9 41 41 H 1.08999 * 109.62914 * 291.47547 * 17 8 7 42 42 H 1.09002 * 109.62890 * 170.89401 * 17 8 7 43 43 H 1.08994 * 109.49778 * 307.21225 * 18 5 4 44 44 H 1.09004 * 109.49332 * 67.29691 * 18 5 4 45 45 H 1.09000 * 109.66790 * 310.70151 * 23 21 19 46 46 H 1.08993 * 109.67541 * 71.19187 * 23 21 19 47 47 H 1.08994 * 109.60164 * 187.28337 * 24 23 21 48 48 H 1.09006 * 109.60093 * 307.76918 * 24 23 21 49 49 H 1.09010 * 109.29366 * 69.56521 * 25 24 23 50 50 H 1.09001 * 109.30328 * 189.13991 * 25 24 23 51 51 H 0.96997 * 117.95281 * 199.07374 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7103 -1.4426 5 7 3.1875 2.9823 -1.4426 6 6 2.3687 4.0634 -0.8782 7 6 3.2266 5.3244 -0.7285 8 7 3.8445 5.6262 -2.0286 9 6 3.7488 6.8764 -2.5789 10 1 3.8750 7.0089 -3.6434 11 6 3.4895 7.9733 -1.7688 12 7 3.9209 7.9899 -0.5255 13 14 2.5283 9.4261 -2.4434 14 1 1.0928 9.2750 -2.0941 15 1 3.0518 10.6836 -1.8519 16 1 2.6759 9.4746 -3.9202 17 6 4.5675 4.5494 -2.7221 18 6 3.6569 3.3189 -2.7933 19 6 2.1389 -1.1672 0.0005 20 8 3.3477 -1.1694 -0.0981 21 6 1.3904 -2.4693 0.1234 22 1 0.3679 -2.3339 -0.2289 23 6 1.3689 -2.9069 1.5901 24 6 0.8534 -4.3495 1.6580 25 6 1.8888 -5.2705 1.0115 26 7 2.2650 -4.7707 -0.3049 27 6 2.0709 -3.5165 -0.7106 28 8 2.4641 -3.2047 -1.8147 29 1 -0.3633 -0.0935 -1.0234 30 1 -0.3633 -0.8395 0.5927 31 1 -0.3633 0.9330 0.4307 32 1 3.1499 1.1385 0.5138 33 1 1.6084 2.0284 0.5137 34 1 1.5001 1.8407 -1.9564 35 1 3.0416 0.9507 -1.9563 36 1 1.5307 4.2705 -1.5438 37 1 1.9917 3.7619 0.0991 38 1 4.0044 5.1519 0.0154 39 1 2.5986 6.1598 -0.4188 40 1 3.7400 8.7566 0.0404 41 1 5.4742 4.3024 -2.1698 42 1 4.8262 4.8723 -3.7305 43 1 4.2141 2.4775 -3.2050 44 1 2.8010 3.5364 -3.4322 45 1 2.3767 -2.8576 2.0025 46 1 0.7076 -2.2531 2.1585 47 1 0.7075 -4.6371 2.6992 48 1 -0.0911 -4.4260 1.1192 49 1 2.7743 -5.3181 1.6455 50 1 1.4666 -6.2700 0.9070 51 1 2.6836 -5.3895 -0.9236 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267572902.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:26 Heat of formation + Delta-G solvation = -57.766619 kcal Electronic energy + Delta-G solvation = -30344.942479 eV Core-core repulsion = 26279.079501 eV Total energy + Delta-G solvation = -4065.862978 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -42.07782 -40.37809 -39.62230 -37.55323 -37.08829 -35.99725 -34.30000 -33.40069 -31.73392 -31.33710 -30.28914 -28.11684 -27.34514 -25.95897 -24.99337 -24.36009 -23.81866 -22.92431 -20.89133 -20.88098 -19.77342 -18.81379 -18.61792 -18.12722 -17.78072 -17.10147 -16.74728 -16.50085 -16.18755 -15.86492 -15.77386 -15.42383 -15.30594 -15.21089 -15.14518 -14.89460 -14.74370 -14.49738 -14.31611 -13.95786 -13.94046 -13.37718 -13.28286 -13.11034 -13.07819 -12.90545 -12.60238 -12.49532 -12.46634 -12.28321 -12.15933 -12.07826 -11.95172 -11.85746 -11.58422 -11.41658 -10.93365 -10.85897 -10.53791 -10.09083 -9.81406 -9.32282 -8.81485 -7.94731 -5.25221 1.32617 1.45494 1.46374 1.47954 1.57800 1.93895 2.34847 2.50795 2.99992 3.16039 3.27641 3.51511 3.62187 3.69139 3.82199 3.87715 4.03514 4.08553 4.18265 4.21293 4.26926 4.29580 4.41967 4.50336 4.54050 4.55525 4.62955 4.65331 4.71803 4.75527 4.78890 4.84422 4.89116 4.92938 4.97795 5.00959 5.07687 5.12622 5.26321 5.29555 5.43024 5.55567 5.64403 5.78860 6.10355 6.16377 6.22442 6.29511 6.31062 7.02332 7.07658 7.16026 7.80350 8.35903 9.13124 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.029278 B = 0.002120 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.123104 B =13205.224903 C =13600.750712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.610 5.610 3 C 0.128 3.872 4 C 0.055 3.945 5 N -0.543 5.543 6 C 0.052 3.948 7 C 0.182 3.818 8 N -0.612 5.612 9 C -0.273 4.273 10 H 0.066 0.934 11 C -0.044 4.044 12 N -0.922 5.922 13 Si 0.957 3.043 14 H -0.283 1.283 15 H -0.295 1.295 16 H -0.271 1.271 17 C 0.146 3.854 18 C 0.058 3.942 19 C 0.523 3.477 20 O -0.576 6.576 21 C -0.120 4.120 22 H 0.153 0.847 23 C -0.110 4.110 24 C -0.128 4.128 25 C 0.096 3.904 26 N -0.710 5.710 27 C 0.526 3.474 28 O -0.600 6.600 29 H 0.062 0.938 30 H 0.104 0.896 31 H 0.094 0.906 32 H 0.065 0.935 33 H 0.102 0.898 34 H 0.039 0.961 35 H 0.052 0.948 36 H 0.026 0.974 37 H 0.092 0.908 38 H 0.000 1.000 39 H 0.055 0.945 40 H 0.253 0.747 41 H 0.013 0.987 42 H 0.061 0.939 43 H 0.079 0.921 44 H 0.028 0.972 45 H 0.060 0.940 46 H 0.110 0.890 47 H 0.120 0.880 48 H 0.091 0.909 49 H 0.072 0.928 50 H 0.110 0.890 51 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.220 -29.783 8.718 34.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.342 5.342 3 C 0.004 3.996 4 C -0.074 4.074 5 N -0.268 5.268 6 C -0.077 4.077 7 C 0.056 3.944 8 N -0.336 5.336 9 C -0.403 4.403 10 H 0.084 0.916 11 C -0.241 4.241 12 N -0.567 5.567 13 Si 0.785 3.215 14 H -0.210 1.210 15 H -0.222 1.222 16 H -0.195 1.195 17 C 0.020 3.980 18 C -0.072 4.072 19 C 0.311 3.689 20 O -0.454 6.454 21 C -0.143 4.143 22 H 0.170 0.830 23 C -0.148 4.148 24 C -0.165 4.165 25 C -0.026 4.026 26 N -0.360 5.360 27 C 0.312 3.688 28 O -0.481 6.481 29 H 0.080 0.920 30 H 0.123 0.877 31 H 0.113 0.887 32 H 0.084 0.916 33 H 0.120 0.880 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.044 0.956 37 H 0.110 0.890 38 H 0.018 0.982 39 H 0.073 0.927 40 H 0.061 0.939 41 H 0.031 0.969 42 H 0.080 0.920 43 H 0.097 0.903 44 H 0.046 0.954 45 H 0.079 0.921 46 H 0.128 0.872 47 H 0.138 0.862 48 H 0.110 0.890 49 H 0.090 0.910 50 H 0.128 0.872 51 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -14.097 -29.410 8.682 33.750 hybrid contribution -0.204 1.066 -1.261 1.664 sum -14.301 -28.344 7.422 32.603 Atomic orbital electron populations 1.22265 0.76399 1.05894 1.03269 1.47880 1.08808 1.04784 1.72776 1.21356 0.97776 0.84674 0.95762 1.22282 0.96323 0.90832 0.97997 1.61800 1.39856 1.02617 1.22552 1.22637 0.94184 0.91551 0.99327 1.20636 0.93818 0.93720 0.86204 1.44509 1.60518 1.07379 1.21197 1.19450 1.44568 0.84534 0.91708 0.91586 1.25569 1.02063 0.99610 0.96812 1.70362 1.45051 1.31636 1.09672 0.85408 0.79191 0.78599 0.78276 1.20977 1.22186 1.19519 1.21077 0.92962 0.87855 0.96087 1.22414 0.98112 0.97959 0.88680 1.20529 0.87312 0.85833 0.75197 1.90739 1.16718 1.87692 1.50295 1.21510 1.02283 0.90216 1.00336 0.82950 1.21712 1.03527 0.99437 0.90154 1.21945 0.98600 0.91680 1.04300 1.21824 0.99457 0.99470 0.81894 1.45433 1.61654 1.10272 1.18668 1.19815 0.78584 0.84074 0.86336 1.90781 1.52505 1.80449 1.24413 0.91982 0.87713 0.88685 0.91609 0.87993 0.94325 0.92984 0.95596 0.88973 0.98199 0.92692 0.93852 0.96933 0.92031 0.90313 0.95351 0.92115 0.87175 0.86166 0.89046 0.90993 0.87173 0.76005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.67 9.87 127.77 1.26 1.93 16 2 N -0.61 -13.15 2.87 -846.75 -2.43 -15.59 16 3 C 0.13 3.42 5.34 86.38 0.46 3.88 16 4 C 0.05 1.74 5.29 86.30 0.46 2.20 16 5 N -0.54 -20.54 4.63 -895.24 -4.14 -24.68 16 6 C 0.05 2.00 5.46 86.39 0.47 2.48 16 7 C 0.18 9.11 5.59 86.35 0.48 9.59 16 8 N -0.61 -32.64 3.05 -698.11 -2.13 -34.77 16 9 C -0.27 -15.66 9.56 84.03 0.80 -14.85 16 10 H 0.07 3.73 7.97 -2.91 -0.02 3.71 16 11 C -0.04 -2.51 4.56 84.86 0.39 -2.12 16 12 N -0.92 -55.74 11.83 21.65 0.26 -55.48 16 13 Si 0.96 45.35 29.65 68.60 2.03 47.39 16 14 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 15 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 16 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 17 C 0.15 6.72 6.69 86.35 0.58 7.30 16 18 C 0.06 2.26 5.62 86.38 0.49 2.75 16 19 C 0.52 13.71 6.26 87.66 0.55 14.26 16 20 O -0.58 -21.76 15.83 7.65 0.12 -21.64 16 21 C -0.12 -1.96 2.03 -12.43 -0.03 -1.99 16 22 H 0.15 1.50 6.20 -2.39 -0.01 1.48 16 23 C -0.11 -0.92 5.31 30.74 0.16 -0.76 16 24 C -0.13 -0.22 6.02 30.68 0.18 -0.04 16 25 C 0.10 0.43 7.17 86.49 0.62 1.05 16 26 N -0.71 -9.89 5.44 -467.48 -2.54 -12.43 16 27 C 0.53 11.96 6.90 87.73 0.61 12.57 16 28 O -0.60 -20.80 16.94 7.66 0.13 -20.67 16 29 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.10 0.39 6.35 -2.39 -0.02 0.37 16 31 H 0.09 0.78 7.83 -2.39 -0.02 0.76 16 32 H 0.07 2.14 7.50 -2.39 -0.02 2.12 16 33 H 0.10 2.28 6.12 -2.39 -0.01 2.26 16 34 H 0.04 1.14 8.12 -2.39 -0.02 1.12 16 35 H 0.05 1.90 7.97 -2.39 -0.02 1.88 16 36 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.09 2.97 6.16 -2.39 -0.01 2.95 16 38 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 39 H 0.05 2.99 6.25 -2.39 -0.01 2.97 16 40 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 41 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.06 2.71 7.93 -2.39 -0.02 2.69 16 43 H 0.08 2.82 7.99 -2.39 -0.02 2.80 16 44 H 0.03 1.11 8.14 -2.38 -0.02 1.09 16 45 H 0.06 0.80 8.09 -2.39 -0.02 0.78 16 46 H 0.11 0.39 8.01 -2.39 -0.02 0.37 16 47 H 0.12 -0.36 8.14 -2.39 -0.02 -0.38 16 48 H 0.09 -0.03 8.12 -2.38 -0.02 -0.05 16 49 H 0.07 0.33 8.14 -2.38 -0.02 0.31 16 50 H 0.11 -0.11 8.14 -2.39 -0.02 -0.13 16 51 H 0.40 5.28 8.80 -92.71 -0.82 4.47 16 Total: -1.00 -88.18 396.09 -1.12 -89.30 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: 0.11 Total: 10.33 kcal Atomic # 6 Polarization: 30.76 SS G_CDS: 7.48 Total: 38.24 kcal Atomic # 7 Polarization: -131.96 SS G_CDS: -10.99 Total: -142.95 kcal Atomic # 8 Polarization: -42.56 SS G_CDS: 0.25 Total: -42.31 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.39 kcal Total: -88.18 -1.12 -89.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267572902.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.534 kcal (2) G-P(sol) polarization free energy of solvation -88.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds