Wall clock time and date at job start Tue Mar 31 2020 20:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46493 * 120.00170 * 2 1 4 4 C 1.53002 * 109.47384 * 270.00223 * 3 2 1 5 5 N 1.46899 * 109.47010 * 179.97438 * 4 3 2 6 6 C 1.46892 * 111.00388 * 294.30459 * 5 4 3 7 7 C 1.53240 * 109.34060 * 172.75006 * 6 5 4 8 8 N 1.47080 * 108.52373 * 53.82718 * 7 6 5 9 9 C 1.36937 * 120.88040 * 128.84122 * 8 7 6 10 10 H 1.08003 * 119.99269 * 206.56007 * 9 8 7 11 11 C 1.38809 * 120.00287 * 26.55629 * 9 8 7 12 12 N 1.31623 * 119.99779 * 17.03149 * 11 9 8 13 13 Si 1.86794 * 119.99946 * 197.02724 * 11 9 8 14 14 H 1.48497 * 109.47573 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.46892 * 120.00130 * 13 11 9 16 16 H 1.48501 * 109.47209 * 239.99998 * 13 11 9 17 17 C 1.47081 * 118.23555 * 308.81391 * 8 7 6 18 18 C 1.46906 * 110.99645 * 169.99751 * 5 4 3 19 19 C 1.34779 * 119.99577 * 180.02562 * 2 1 3 20 20 O 1.21281 * 119.99682 * 180.02562 * 19 2 1 21 21 C 1.50695 * 120.00287 * 359.72220 * 19 2 1 22 22 N 1.46507 * 109.47007 * 180.27754 * 21 19 2 23 23 C 1.46756 * 124.34545 * 269.72360 * 22 21 19 24 24 C 1.54672 * 105.37830 * 162.85693 * 23 22 21 25 25 C 1.54625 * 101.68567 * 25.76599 * 24 23 22 26 26 C 1.34423 * 124.34644 * 90.02665 * 22 21 19 27 27 O 1.21272 * 124.94545 * 0.42435 * 26 22 21 28 28 H 1.09004 * 109.47069 * 269.99919 * 1 2 3 29 29 H 1.08998 * 109.47220 * 29.99352 * 1 2 3 30 30 H 1.09001 * 109.47068 * 149.99983 * 1 2 3 31 31 H 1.09009 * 109.47111 * 30.00306 * 3 2 1 32 32 H 1.08994 * 109.47165 * 149.99947 * 3 2 1 33 33 H 1.08993 * 109.46823 * 300.00117 * 4 3 2 34 34 H 1.09001 * 109.46843 * 59.99722 * 4 3 2 35 35 H 1.09005 * 109.49021 * 292.70579 * 6 5 4 36 36 H 1.08992 * 109.49749 * 52.78523 * 6 5 4 37 37 H 1.09002 * 109.62893 * 294.11913 * 7 6 5 38 38 H 1.09001 * 109.63292 * 173.54076 * 7 6 5 39 39 H 0.96994 * 119.99588 * 180.02562 * 12 11 9 40 40 H 1.08988 * 109.63245 * 291.47804 * 17 8 7 41 41 H 1.09000 * 109.78836 * 170.98353 * 17 8 7 42 42 H 1.08994 * 109.49401 * 307.21508 * 18 5 4 43 43 H 1.09001 * 109.48787 * 67.30093 * 18 5 4 44 44 H 1.09001 * 109.47192 * 300.27648 * 21 19 2 45 45 H 1.08991 * 109.47031 * 60.27585 * 21 19 2 46 46 H 1.08996 * 110.24907 * 281.97899 * 23 22 21 47 47 H 1.09002 * 110.24777 * 43.98914 * 23 22 21 48 48 H 1.09003 * 111.18598 * 267.59091 * 24 23 22 49 49 H 1.08996 * 110.81583 * 143.77946 * 24 23 22 50 50 H 1.08999 * 110.48846 * 216.31392 * 25 24 23 51 51 H 1.09000 * 110.59993 * 93.72175 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4525 1.7104 -1.4425 5 7 3.1865 2.9829 -1.4424 6 6 2.3670 4.0634 -0.8781 7 6 3.2238 5.3250 -0.7283 8 7 3.8418 5.6272 -2.0283 9 6 3.7461 6.8776 -2.5782 10 1 3.7998 7.0017 -3.6498 11 6 3.5800 7.9855 -1.7586 12 7 3.8453 7.8983 -0.4724 13 14 2.9800 9.6002 -2.4812 14 1 2.7542 9.4364 -3.9397 15 1 1.7072 9.9936 -1.8249 16 1 4.0009 10.6543 -2.2531 17 6 4.5658 4.5509 -2.7216 18 6 3.6561 3.3198 -2.7930 19 6 2.1388 -1.1673 -0.0005 20 8 3.3517 -1.1673 -0.0001 21 6 1.3854 -2.4723 0.0052 22 7 2.3374 -3.5859 0.0101 23 6 2.8710 -4.2243 -1.1988 24 6 4.1218 -5.0054 -0.7321 25 6 3.7906 -5.2673 0.7554 26 6 2.8299 -4.1578 1.1225 27 8 2.5452 -3.8320 2.2554 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5137 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6085 2.0284 0.5139 32 1 3.1499 1.1383 0.5138 33 1 3.0415 0.9508 -1.9563 34 1 1.5001 1.8407 -1.9563 35 1 1.5289 4.2699 -1.5439 36 1 1.9899 3.7617 0.0990 37 1 4.0016 5.1531 0.0158 38 1 2.5952 6.1600 -0.4187 39 1 3.7288 8.6723 0.1004 40 1 5.4725 4.3046 -2.1692 41 1 4.8271 4.8719 -3.7299 42 1 4.2140 2.4787 -3.2045 43 1 2.8001 3.5367 -3.4320 44 1 0.7587 -2.5261 0.8955 45 1 0.7587 -2.5339 -0.8844 46 1 2.1335 -4.9061 -1.6221 47 1 3.1517 -3.4683 -1.9321 48 1 5.0233 -4.4005 -0.8305 49 1 4.2205 -5.9420 -1.2806 50 1 4.6931 -5.2071 1.3635 51 1 3.3141 -6.2401 0.8766 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267573892.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:48 Heat of formation + Delta-G solvation = -18.781662 kcal Electronic energy + Delta-G solvation = -30039.646002 eV Core-core repulsion = 25975.473539 eV Total energy + Delta-G solvation = -4064.172463 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -40.92078 -39.65890 -38.10611 -36.65015 -35.86554 -34.36580 -33.26140 -31.57962 -29.92247 -29.67415 -27.91138 -27.76634 -26.92947 -25.51405 -23.39743 -22.55469 -22.31210 -21.58846 -20.18482 -19.14736 -19.07244 -17.67451 -17.14653 -16.82800 -16.71920 -16.14631 -15.75472 -15.40355 -14.90764 -14.58643 -14.35111 -14.08714 -13.97281 -13.83803 -13.58156 -13.50560 -13.44356 -13.34949 -13.21952 -12.95651 -12.88002 -12.65555 -12.40524 -12.22726 -11.85190 -11.78610 -11.41417 -11.39739 -11.06994 -10.95363 -10.74627 -10.40668 -10.31001 -10.22681 -10.09725 -10.03409 -9.74366 -9.60997 -9.02421 -8.83798 -8.49869 -7.81272 -6.65411 -5.77048 -3.18096 2.18370 2.42693 2.53857 2.94969 3.36984 3.44772 3.47041 3.98547 4.10121 4.23062 4.45052 4.47073 4.52304 4.59766 4.68275 4.82980 4.87379 5.02316 5.05948 5.13295 5.16316 5.32709 5.34574 5.37091 5.40593 5.44642 5.44822 5.59515 5.63970 5.80002 5.90733 5.97759 6.03044 6.09988 6.14915 6.21860 6.31472 6.39845 6.54448 6.70601 6.73779 6.95985 7.15936 7.26365 7.60912 7.65755 7.71565 7.83045 7.85146 8.00844 8.44459 9.22338 9.85786 10.44656 11.31818 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.026412 B = 0.002041 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.884729 B =13716.312527 C =14054.714592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.615 5.615 3 C 0.118 3.882 4 C 0.047 3.953 5 N -0.530 5.530 6 C 0.033 3.967 7 C 0.178 3.822 8 N -0.596 5.596 9 C -0.250 4.250 10 H 0.066 0.934 11 C -0.001 4.001 12 N -0.903 5.903 13 Si 0.902 3.098 14 H -0.278 1.278 15 H -0.289 1.289 16 H -0.290 1.290 17 C 0.149 3.851 18 C 0.048 3.952 19 C 0.493 3.507 20 O -0.521 6.521 21 C 0.109 3.891 22 N -0.606 5.606 23 C 0.104 3.896 24 C -0.130 4.130 25 C -0.152 4.152 26 C 0.523 3.477 27 O -0.530 6.530 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.068 0.932 34 H 0.024 0.976 35 H 0.024 0.976 36 H 0.061 0.939 37 H 0.027 0.973 38 H 0.088 0.912 39 H 0.253 0.747 40 H 0.026 0.974 41 H 0.055 0.945 42 H 0.060 0.940 43 H 0.026 0.974 44 H 0.111 0.889 45 H 0.108 0.892 46 H 0.074 0.926 47 H 0.080 0.920 48 H 0.086 0.914 49 H 0.090 0.910 50 H 0.103 0.897 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.036 -27.379 -2.003 28.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.350 5.350 3 C -0.004 4.004 4 C -0.083 4.083 5 N -0.256 5.256 6 C -0.096 4.096 7 C 0.052 3.948 8 N -0.319 5.319 9 C -0.380 4.380 10 H 0.084 0.916 11 C -0.199 4.199 12 N -0.548 5.548 13 Si 0.732 3.268 14 H -0.203 1.203 15 H -0.216 1.216 16 H -0.217 1.217 17 C 0.022 3.978 18 C -0.082 4.082 19 C 0.278 3.722 20 O -0.396 6.396 21 C -0.017 4.017 22 N -0.340 5.340 23 C -0.018 4.018 24 C -0.168 4.168 25 C -0.193 4.193 26 C 0.311 3.689 27 O -0.406 6.406 28 H 0.079 0.921 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.111 0.889 33 H 0.087 0.913 34 H 0.043 0.957 35 H 0.042 0.958 36 H 0.079 0.921 37 H 0.045 0.955 38 H 0.107 0.893 39 H 0.063 0.937 40 H 0.044 0.956 41 H 0.074 0.926 42 H 0.079 0.921 43 H 0.045 0.955 44 H 0.129 0.871 45 H 0.126 0.874 46 H 0.092 0.908 47 H 0.099 0.901 48 H 0.105 0.895 49 H 0.109 0.891 50 H 0.121 0.879 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -7.171 -27.057 -0.991 28.008 hybrid contribution -1.205 1.127 -0.932 1.895 sum -8.376 -25.930 -1.924 27.317 Atomic orbital electron populations 1.21865 0.79440 1.03340 1.02223 1.47892 1.07037 1.06283 1.73785 1.21530 0.98222 0.83229 0.97457 1.22335 0.96479 0.93216 0.96261 1.61863 1.39123 1.01774 1.22798 1.22970 0.95520 0.93656 0.97489 1.20865 0.94622 0.92161 0.87183 1.44135 1.59717 1.07277 1.20795 1.19234 1.44716 0.82918 0.91101 0.91619 1.25033 1.01286 0.97566 0.95996 1.70045 1.50958 1.29649 1.04117 0.86225 0.78271 0.83829 0.78467 1.20347 1.21612 1.21714 1.20974 0.92983 0.87444 0.96420 1.22593 0.98503 0.98967 0.88092 1.21159 0.88681 0.85626 0.76706 1.90736 1.13662 1.86984 1.48243 1.21236 0.91195 0.83915 1.05322 1.47833 1.45527 1.32627 1.07980 1.22150 0.95554 0.96802 0.87337 1.22613 0.98139 1.01197 0.94831 1.22299 1.00389 0.98530 0.98041 1.20955 0.80780 0.83071 0.84114 1.90731 1.61878 1.66674 1.21328 0.92101 0.90522 0.91215 0.90178 0.88907 0.91332 0.95739 0.95750 0.92083 0.95505 0.89347 0.93676 0.95592 0.92614 0.92115 0.95537 0.87067 0.87366 0.90821 0.90147 0.89540 0.89103 0.87872 0.87804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.51 10.24 59.85 0.61 1.13 16 2 N -0.61 -6.87 2.87 -181.57 -0.52 -7.39 16 3 C 0.12 1.62 5.34 -4.04 -0.02 1.60 16 4 C 0.05 0.70 5.29 -3.82 -0.02 0.68 16 5 N -0.53 -9.76 4.63 -234.32 -1.08 -10.84 16 6 C 0.03 0.64 5.46 -3.70 -0.02 0.62 16 7 C 0.18 4.35 5.42 -3.60 -0.02 4.33 16 8 N -0.60 -15.39 3.04 -172.01 -0.52 -15.91 16 9 C -0.25 -6.96 9.63 -15.06 -0.15 -7.11 16 10 H 0.07 1.80 7.88 -52.48 -0.41 1.38 16 11 C 0.00 -0.01 4.93 -17.43 -0.09 -0.10 16 12 N -0.90 -26.50 11.15 55.49 0.62 -25.88 16 13 Si 0.90 21.80 29.59 -169.99 -5.03 16.77 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 15 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 16 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 17 C 0.15 3.26 6.69 -3.60 -0.02 3.24 16 18 C 0.05 0.89 5.62 -3.70 -0.02 0.87 16 19 C 0.49 6.13 7.74 -10.99 -0.09 6.05 16 20 O -0.52 -8.77 16.01 5.56 0.09 -8.68 16 21 C 0.11 0.94 4.97 -5.19 -0.03 0.92 16 22 N -0.61 -5.70 2.42 -173.67 -0.42 -6.12 16 23 C 0.10 0.63 7.36 -3.02 -0.02 0.61 16 24 C -0.13 -0.68 7.19 -25.00 -0.18 -0.86 16 25 C -0.15 -1.06 6.86 -26.74 -0.18 -1.24 16 26 C 0.52 5.98 8.02 -10.86 -0.09 5.89 16 27 O -0.53 -8.35 17.59 5.56 0.10 -8.25 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 0.51 8.07 -51.93 -0.42 0.09 16 30 H 0.07 0.29 6.45 -51.93 -0.33 -0.04 16 31 H 0.08 1.04 6.33 -51.92 -0.33 0.71 16 32 H 0.09 1.54 7.42 -51.93 -0.39 1.15 16 33 H 0.07 1.07 7.97 -51.93 -0.41 0.65 16 34 H 0.02 0.35 8.12 -51.93 -0.42 -0.07 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.06 1.06 6.16 -51.93 -0.32 0.74 16 37 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.09 2.37 6.12 -51.93 -0.32 2.06 16 39 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 40 H 0.03 0.60 8.14 -51.94 -0.42 0.17 16 41 H 0.06 1.17 7.96 -51.93 -0.41 0.75 16 42 H 0.06 1.01 7.99 -51.93 -0.41 0.59 16 43 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.11 0.92 7.88 -51.93 -0.41 0.51 16 45 H 0.11 0.54 7.41 -51.93 -0.38 0.15 16 46 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 47 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 50 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 51 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 403.00 15.07 6.07 6.07 Total: -1.00 -36.95 403.00 -9.79 -46.74 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -8.76 Total: -3.13 kcal Atomic # 6 Polarization: 16.95 SS G_CDS: -0.33 Total: 16.62 kcal Atomic # 7 Polarization: -64.21 SS G_CDS: -1.93 Total: -66.14 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: 0.19 Total: -16.94 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.77 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -36.95 -9.79 -46.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267573892.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.955 kcal (2) G-P(sol) polarization free energy of solvation -36.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds