Wall clock time and date at job start Tue Mar 31 2020 20:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36937 * 120.00328 * 2 1 4 4 H 1.08003 * 119.99959 * 201.63842 * 3 2 1 5 5 C 1.38812 * 119.99555 * 21.63409 * 3 2 1 6 6 N 1.31619 * 120.00206 * 19.02753 * 5 3 2 7 7 Si 1.86804 * 119.99831 * 199.03060 * 5 3 2 8 8 H 1.48496 * 109.47148 * 94.98508 * 7 5 3 9 9 H 1.48494 * 109.46958 * 214.98493 * 7 5 3 10 10 H 1.48508 * 109.47001 * 334.98405 * 7 5 3 11 11 C 1.46502 * 119.99888 * 180.02562 * 2 1 3 12 12 C 1.53003 * 109.46950 * 269.99739 * 11 2 1 13 13 H 1.08996 * 110.88991 * 308.88177 * 12 11 2 14 14 C 1.55155 * 111.03595 * 72.78673 * 12 11 2 15 15 C 1.54334 * 103.01940 * 153.39325 * 14 12 11 16 16 N 1.47023 * 107.26944 * 338.13956 * 15 14 12 17 17 C 1.34773 * 125.64980 * 178.84971 * 16 15 14 18 18 O 1.21287 * 119.99674 * 179.69643 * 17 16 15 19 19 C 1.50695 * 120.00097 * 359.41325 * 17 16 15 20 20 H 1.09002 * 109.58224 * 2.41638 * 19 17 16 21 21 C 1.53192 * 109.59099 * 241.98405 * 19 17 16 22 22 C 1.53042 * 109.31232 * 185.58172 * 21 19 17 23 23 C 1.53038 * 109.54161 * 61.36041 * 22 21 19 24 24 C 1.53193 * 109.31401 * 298.63654 * 23 22 21 25 25 N 1.46928 * 109.58200 * 122.69159 * 19 17 16 26 26 C 1.34772 * 120.63559 * 353.37951 * 25 19 17 27 27 N 1.34776 * 120.00179 * 185.34976 * 26 25 19 28 28 O 1.21591 * 119.99622 * 5.34594 * 26 25 19 29 29 C 1.47427 * 108.70178 * 358.58471 * 16 15 14 30 30 H 1.09003 * 109.47571 * 266.92810 * 1 2 3 31 31 H 1.08999 * 109.47110 * 26.93130 * 1 2 3 32 32 H 1.09004 * 109.47313 * 146.92989 * 1 2 3 33 33 H 0.96998 * 119.99894 * 179.97438 * 6 5 3 34 34 H 1.09002 * 109.46996 * 150.00204 * 11 2 1 35 35 H 1.08996 * 109.47609 * 29.99985 * 11 2 1 36 36 H 1.08999 * 110.72123 * 271.95154 * 14 12 11 37 37 H 1.09006 * 110.71927 * 35.05379 * 14 12 11 38 38 H 1.08999 * 109.99105 * 218.66568 * 15 14 12 39 39 H 1.08994 * 109.77779 * 97.49927 * 15 14 12 40 40 H 1.09003 * 109.49505 * 305.52930 * 21 19 17 41 41 H 1.08999 * 109.49458 * 65.62872 * 21 19 17 42 42 H 1.09002 * 109.45664 * 301.34318 * 22 21 19 43 43 H 1.08997 * 109.44453 * 181.37990 * 22 21 19 44 44 H 1.08999 * 109.49605 * 178.68143 * 23 22 21 45 45 H 1.09008 * 109.49503 * 58.58595 * 23 22 21 46 46 H 1.08990 * 109.58724 * 294.84757 * 24 23 22 47 47 H 1.09005 * 109.70032 * 174.48790 * 24 23 22 48 48 H 0.97002 * 120.00268 * 6.37700 * 27 26 25 49 49 H 0.97005 * 119.99489 * 186.38407 * 27 26 25 50 50 H 1.08994 * 110.36740 * 143.19116 * 29 16 15 51 51 H 1.08998 * 110.37064 * 265.51799 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1726 1.2188 -0.3449 5 6 1.5289 2.3457 0.4432 6 7 0.4530 2.2692 1.1974 7 14 2.2207 4.0149 -0.0308 8 1 1.5142 4.5195 -1.2355 9 1 2.0274 4.9676 1.0917 10 1 3.6704 3.8844 -0.3254 11 6 2.1974 -1.2688 -0.0006 12 6 2.4524 -1.7110 1.4418 13 1 2.9024 -0.9052 2.0216 14 6 1.1453 -2.2138 2.1095 15 6 1.6587 -3.2000 3.1798 16 7 3.0038 -3.6285 2.7692 17 6 3.8013 -4.4742 3.4513 18 8 4.8947 -4.7629 3.0130 19 6 3.3369 -5.0560 4.7615 20 1 2.3233 -4.7159 4.9735 21 6 4.2776 -4.6081 5.8846 22 6 3.8843 -5.3122 7.1852 23 6 4.0262 -6.8260 7.0111 24 6 3.0827 -7.2990 5.9008 25 7 3.3580 -6.5231 4.6838 26 6 3.6243 -7.1454 3.5184 27 7 3.5347 -8.4876 3.4352 28 8 3.9454 -6.4958 2.5420 29 6 3.3333 -2.9847 1.4845 30 1 -0.3634 -0.0551 1.0262 31 1 -0.3633 0.9162 -0.4654 32 1 -0.3634 -0.8612 -0.5608 33 1 0.0194 3.0797 1.5074 34 1 3.1499 -1.1382 -0.5143 35 1 1.6084 -2.0282 -0.5147 36 1 0.6053 -1.3870 2.5710 37 1 0.5145 -2.7275 1.3840 38 1 0.9965 -4.0638 3.2389 39 1 1.7079 -2.7012 4.1477 40 1 5.3037 -4.8693 5.6255 41 1 4.1986 -3.5291 6.0166 42 1 2.8501 -5.0703 7.4306 43 1 4.5367 -4.9765 7.9912 44 1 3.7684 -7.3253 7.9450 45 1 5.0547 -7.0662 6.7414 46 1 2.0489 -7.1418 6.2083 47 1 3.2485 -8.3582 5.7042 48 1 3.1902 -8.9981 4.1847 49 1 3.8149 -8.9431 2.6259 50 1 4.3894 -2.7167 1.4543 51 1 3.0849 -3.6457 0.6541 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267593237.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:15 Heat of formation + Delta-G solvation = -16.889711 kcal Electronic energy + Delta-G solvation = -31266.531905 eV Core-core repulsion = 27202.441483 eV Total energy + Delta-G solvation = -4064.090422 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.07005 -39.10366 -37.62200 -37.05140 -35.22548 -33.98697 -32.68695 -32.16705 -31.35464 -30.19218 -28.95240 -26.41554 -25.83332 -25.14703 -23.98834 -22.68304 -21.68869 -21.16528 -20.06548 -19.54687 -19.33747 -17.97270 -17.19211 -16.64044 -16.49883 -15.87008 -15.49991 -15.45377 -14.94102 -14.73658 -14.45117 -14.42455 -14.00838 -13.70632 -13.54533 -13.49834 -13.30945 -13.06311 -12.74606 -12.54855 -12.34675 -11.85479 -11.75127 -11.64217 -11.51771 -11.36086 -11.21210 -11.04184 -10.96059 -10.74160 -10.67848 -10.40676 -10.07140 -9.94809 -9.83055 -9.78294 -9.70467 -9.67670 -9.21749 -8.84036 -8.46073 -8.07451 -6.72368 -5.72632 -3.11360 2.32933 3.01355 3.26710 3.41309 3.42824 3.49017 3.50387 3.96439 4.35804 4.41829 4.51794 4.54753 4.70081 4.79965 4.87230 5.05372 5.07594 5.13429 5.25918 5.35564 5.38838 5.46558 5.47192 5.51420 5.62176 5.67581 5.73081 5.77449 5.92021 6.01946 6.08693 6.12636 6.22293 6.34786 6.42344 6.51032 6.51691 6.62752 6.74211 6.77780 6.83631 6.89380 7.13350 7.36892 7.67434 7.68097 7.86213 7.97661 8.43825 8.48582 8.76562 9.27072 9.91917 10.41266 11.34794 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.020475 B = 0.002614 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.166536 B =10706.998591 C =11173.046720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.597 5.597 3 C -0.252 4.252 4 H 0.069 0.931 5 C 0.001 3.999 6 N -0.904 5.904 7 Si 0.899 3.101 8 H -0.289 1.289 9 H -0.293 1.293 10 H -0.279 1.279 11 C 0.162 3.838 12 C -0.116 4.116 13 H 0.085 0.915 14 C -0.114 4.114 15 C 0.101 3.899 16 N -0.616 5.616 17 C 0.543 3.457 18 O -0.508 6.508 19 C 0.149 3.851 20 H 0.086 0.914 21 C -0.124 4.124 22 C -0.117 4.117 23 C -0.136 4.136 24 C 0.114 3.886 25 N -0.620 5.620 26 C 0.695 3.305 27 N -0.871 5.871 28 O -0.544 6.544 29 C 0.118 3.882 30 H 0.020 0.980 31 H 0.050 0.950 32 H -0.005 1.005 33 H 0.251 0.749 34 H 0.047 0.953 35 H 0.039 0.961 36 H 0.086 0.914 37 H 0.066 0.934 38 H 0.055 0.945 39 H 0.061 0.939 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.067 0.933 43 H 0.071 0.929 44 H 0.077 0.923 45 H 0.069 0.931 46 H 0.071 0.929 47 H 0.080 0.920 48 H 0.391 0.609 49 H 0.412 0.588 50 H 0.069 0.931 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.555 -22.381 13.859 26.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.319 5.319 3 C -0.382 4.382 4 H 0.086 0.914 5 C -0.197 4.197 6 N -0.549 5.549 7 Si 0.730 3.270 8 H -0.216 1.216 9 H -0.220 1.220 10 H -0.205 1.205 11 C 0.035 3.965 12 C -0.138 4.138 13 H 0.103 0.897 14 C -0.152 4.152 15 C -0.022 4.022 16 N -0.351 5.351 17 C 0.330 3.670 18 O -0.382 6.382 19 C 0.041 3.959 20 H 0.104 0.896 21 C -0.163 4.163 22 C -0.155 4.155 23 C -0.175 4.175 24 C -0.009 4.009 25 N -0.361 5.361 26 C 0.395 3.605 27 N -0.442 5.442 28 O -0.418 6.418 29 C -0.004 4.004 30 H 0.038 0.962 31 H 0.069 0.931 32 H 0.014 0.986 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.105 0.895 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.086 0.914 43 H 0.090 0.910 44 H 0.095 0.905 45 H 0.088 0.912 46 H 0.089 0.911 47 H 0.098 0.902 48 H 0.221 0.779 49 H 0.244 0.756 50 H 0.087 0.913 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.305 -21.862 13.126 25.604 hybrid contribution 0.057 0.385 0.166 0.423 sum 2.362 -21.478 13.291 25.368 Atomic orbital electron populations 1.20766 0.82774 0.96879 0.97862 1.43968 1.01770 1.00663 1.85539 1.19239 0.97824 0.85087 1.36059 0.91358 1.24914 0.98502 0.98254 0.98017 1.70099 1.22501 1.26946 1.35331 0.86309 0.78602 0.84432 0.77688 1.21628 1.21951 1.20453 1.20746 0.95931 0.88207 0.91665 1.23197 0.93973 0.95093 1.01512 0.89673 1.22565 0.98137 0.97665 0.96850 1.22075 0.83565 0.97571 0.99032 1.48375 1.16991 1.46335 1.23426 1.19283 0.85117 0.78102 0.84531 1.90680 1.21955 1.57569 1.68005 1.21050 1.00393 0.79463 0.94987 0.89591 1.21855 1.00142 1.00941 0.93370 1.21499 1.02170 0.94645 0.97137 1.21938 1.00453 0.96782 0.98302 1.21657 0.99397 0.95097 0.84754 1.47031 1.75817 1.05156 1.08143 1.16083 0.78366 0.82330 0.83712 1.43193 1.73080 1.06083 1.21833 1.91251 1.51864 1.62616 1.36081 1.22251 1.00018 0.93523 0.84643 0.96209 0.93111 0.98612 0.93884 0.93491 0.94229 0.89538 0.91520 0.92639 0.92076 0.90249 0.90105 0.91405 0.91021 0.90474 0.91221 0.91118 0.90227 0.77926 0.75554 0.91253 0.92201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.90 8.51 59.84 0.51 4.41 16 2 N -0.60 -14.82 2.89 -181.12 -0.52 -15.34 16 3 C -0.25 -6.92 9.63 -15.06 -0.15 -7.06 16 4 H 0.07 1.86 7.89 -52.48 -0.41 1.45 16 5 C 0.00 0.04 4.90 -17.43 -0.09 -0.05 16 6 N -0.90 -25.97 11.05 55.49 0.61 -25.36 16 7 Si 0.90 21.94 29.59 -169.99 -5.03 16.91 16 8 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 9 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 11 C 0.16 3.36 5.21 -4.04 -0.02 3.34 16 12 C -0.12 -2.19 3.26 -88.46 -0.29 -2.48 16 13 H 0.08 1.85 8.14 -51.93 -0.42 1.42 16 14 C -0.11 -1.92 5.70 -24.89 -0.14 -2.06 16 15 C 0.10 1.46 5.81 -3.06 -0.02 1.44 16 16 N -0.62 -10.44 3.33 -170.51 -0.57 -11.01 16 17 C 0.54 9.35 4.81 -10.99 -0.05 9.30 16 18 O -0.51 -10.77 14.18 -20.01 -0.28 -11.05 16 19 C 0.15 1.84 3.13 -68.75 -0.22 1.63 16 20 H 0.09 0.93 6.62 -51.93 -0.34 0.59 16 21 C -0.12 -1.29 5.33 -26.61 -0.14 -1.43 16 22 C -0.12 -0.80 5.88 -26.69 -0.16 -0.96 16 23 C -0.14 -0.79 6.08 -26.61 -0.16 -0.95 16 24 C 0.11 0.71 6.34 -3.71 -0.02 0.68 16 25 N -0.62 -6.79 2.97 -172.23 -0.51 -7.30 16 26 C 0.70 9.37 8.40 -86.92 -0.73 8.64 16 27 N -0.87 -7.30 8.72 27.63 0.24 -7.06 16 28 O -0.54 -10.35 12.29 -20.28 -0.25 -10.60 16 29 C 0.12 2.15 6.37 -2.52 -0.02 2.13 16 30 H 0.02 0.49 7.18 -51.93 -0.37 0.12 16 31 H 0.05 1.33 6.86 -51.93 -0.36 0.98 16 32 H 0.00 -0.10 7.94 -51.93 -0.41 -0.51 16 33 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 34 H 0.05 0.97 8.03 -51.93 -0.42 0.55 16 35 H 0.04 0.76 7.75 -51.93 -0.40 0.36 16 36 H 0.09 1.60 7.63 -51.93 -0.40 1.20 16 37 H 0.07 1.09 7.92 -51.93 -0.41 0.68 16 38 H 0.06 0.72 8.07 -51.93 -0.42 0.30 16 39 H 0.06 0.80 8.04 -51.93 -0.42 0.38 16 40 H 0.08 0.98 8.00 -51.93 -0.42 0.57 16 41 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 45 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 46 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.08 0.32 5.76 -51.93 -0.30 0.02 16 48 H 0.39 1.90 6.45 -40.82 -0.26 1.64 16 49 H 0.41 3.16 8.93 -40.82 -0.36 2.80 16 50 H 0.07 1.33 8.04 -51.93 -0.42 0.91 16 51 H 0.06 1.09 8.04 -51.93 -0.42 0.68 16 LS Contribution 390.17 15.07 5.88 5.88 Total: -1.00 -36.31 390.17 -10.76 -47.07 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -8.63 Total: 1.28 kcal Atomic # 6 Polarization: 18.26 SS G_CDS: -1.69 Total: 16.58 kcal Atomic # 7 Polarization: -65.32 SS G_CDS: -0.75 Total: -66.07 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -0.53 Total: -21.65 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.91 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.31 -10.76 -47.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267593237.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.177 kcal (2) G-P(sol) polarization free energy of solvation -36.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds