Wall clock time and date at job start Tue Mar 31 2020 20:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36937 * 120.00328 * 2 1 4 4 H 1.08003 * 119.99959 * 201.63842 * 3 2 1 5 5 C 1.38812 * 119.99555 * 21.63409 * 3 2 1 6 6 N 1.31619 * 120.00206 * 19.02753 * 5 3 2 7 7 Si 1.86804 * 119.99831 * 199.03060 * 5 3 2 8 8 H 1.48496 * 109.47148 * 94.98508 * 7 5 3 9 9 H 1.48494 * 109.46958 * 214.98493 * 7 5 3 10 10 H 1.48508 * 109.47001 * 334.98405 * 7 5 3 11 11 C 1.46502 * 119.99888 * 180.02562 * 2 1 3 12 12 C 1.53003 * 109.46950 * 269.99739 * 11 2 1 13 13 H 1.08996 * 110.88991 * 308.88177 * 12 11 2 14 14 C 1.55155 * 111.03595 * 72.78673 * 12 11 2 15 15 C 1.54334 * 103.01940 * 153.39325 * 14 12 11 16 16 N 1.47023 * 107.26944 * 338.13956 * 15 14 12 17 17 C 1.34773 * 125.64980 * 178.84971 * 16 15 14 18 18 O 1.21287 * 119.99674 * 179.69643 * 17 16 15 19 19 C 1.50695 * 120.00097 * 359.41325 * 17 16 15 20 20 H 1.09002 * 109.58224 * 2.41638 * 19 17 16 21 21 C 1.53192 * 109.59099 * 241.98405 * 19 17 16 22 22 C 1.53042 * 109.31232 * 185.58172 * 21 19 17 23 23 C 1.53038 * 109.54161 * 61.36041 * 22 21 19 24 24 C 1.53193 * 109.31401 * 298.63654 * 23 22 21 25 25 N 1.46928 * 109.58200 * 122.69159 * 19 17 16 26 26 C 1.34772 * 120.63559 * 353.37951 * 25 19 17 27 27 N 1.34776 * 120.00179 * 185.34976 * 26 25 19 28 28 O 1.21591 * 119.99622 * 5.34594 * 26 25 19 29 29 C 1.47427 * 108.70178 * 358.58471 * 16 15 14 30 30 H 1.09003 * 109.47571 * 266.92810 * 1 2 3 31 31 H 1.08999 * 109.47110 * 26.93130 * 1 2 3 32 32 H 1.09004 * 109.47313 * 146.92989 * 1 2 3 33 33 H 0.96998 * 119.99894 * 179.97438 * 6 5 3 34 34 H 1.09002 * 109.46996 * 150.00204 * 11 2 1 35 35 H 1.08996 * 109.47609 * 29.99985 * 11 2 1 36 36 H 1.08999 * 110.72123 * 271.95154 * 14 12 11 37 37 H 1.09006 * 110.71927 * 35.05379 * 14 12 11 38 38 H 1.08999 * 109.99105 * 218.66568 * 15 14 12 39 39 H 1.08994 * 109.77779 * 97.49927 * 15 14 12 40 40 H 1.09003 * 109.49505 * 305.52930 * 21 19 17 41 41 H 1.08999 * 109.49458 * 65.62872 * 21 19 17 42 42 H 1.09002 * 109.45664 * 301.34318 * 22 21 19 43 43 H 1.08997 * 109.44453 * 181.37990 * 22 21 19 44 44 H 1.08999 * 109.49605 * 178.68143 * 23 22 21 45 45 H 1.09008 * 109.49503 * 58.58595 * 23 22 21 46 46 H 1.08990 * 109.58724 * 294.84757 * 24 23 22 47 47 H 1.09005 * 109.70032 * 174.48790 * 24 23 22 48 48 H 0.97002 * 120.00268 * 6.37700 * 27 26 25 49 49 H 0.97005 * 119.99489 * 186.38407 * 27 26 25 50 50 H 1.08994 * 110.36740 * 143.19116 * 29 16 15 51 51 H 1.08998 * 110.37064 * 265.51799 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1726 1.2188 -0.3449 5 6 1.5289 2.3457 0.4432 6 7 0.4530 2.2692 1.1974 7 14 2.2207 4.0149 -0.0308 8 1 1.5142 4.5195 -1.2355 9 1 2.0274 4.9676 1.0917 10 1 3.6704 3.8844 -0.3254 11 6 2.1974 -1.2688 -0.0006 12 6 2.4524 -1.7110 1.4418 13 1 2.9024 -0.9052 2.0216 14 6 1.1453 -2.2138 2.1095 15 6 1.6587 -3.2000 3.1798 16 7 3.0038 -3.6285 2.7692 17 6 3.8013 -4.4742 3.4513 18 8 4.8947 -4.7629 3.0130 19 6 3.3369 -5.0560 4.7615 20 1 2.3233 -4.7159 4.9735 21 6 4.2776 -4.6081 5.8846 22 6 3.8843 -5.3122 7.1852 23 6 4.0262 -6.8260 7.0111 24 6 3.0827 -7.2990 5.9008 25 7 3.3580 -6.5231 4.6838 26 6 3.6243 -7.1454 3.5184 27 7 3.5347 -8.4876 3.4352 28 8 3.9454 -6.4958 2.5420 29 6 3.3333 -2.9847 1.4845 30 1 -0.3634 -0.0551 1.0262 31 1 -0.3633 0.9162 -0.4654 32 1 -0.3634 -0.8612 -0.5608 33 1 0.0194 3.0797 1.5074 34 1 3.1499 -1.1382 -0.5143 35 1 1.6084 -2.0282 -0.5147 36 1 0.6053 -1.3870 2.5710 37 1 0.5145 -2.7275 1.3840 38 1 0.9965 -4.0638 3.2389 39 1 1.7079 -2.7012 4.1477 40 1 5.3037 -4.8693 5.6255 41 1 4.1986 -3.5291 6.0166 42 1 2.8501 -5.0703 7.4306 43 1 4.5367 -4.9765 7.9912 44 1 3.7684 -7.3253 7.9450 45 1 5.0547 -7.0662 6.7414 46 1 2.0489 -7.1418 6.2083 47 1 3.2485 -8.3582 5.7042 48 1 3.1902 -8.9981 4.1847 49 1 3.8149 -8.9431 2.6259 50 1 4.3894 -2.7167 1.4543 51 1 3.0849 -3.6457 0.6541 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267593237.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:14 Heat of formation + Delta-G solvation = -41.764846 kcal Electronic energy + Delta-G solvation = -31267.610572 eV Core-core repulsion = 27202.441483 eV Total energy + Delta-G solvation = -4065.169089 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.06948 -40.37000 -38.72515 -38.23633 -37.03044 -34.92527 -33.93940 -33.34989 -32.47594 -31.67315 -30.38062 -27.95719 -27.54676 -26.34049 -24.96615 -23.89035 -22.94680 -22.48947 -21.21375 -20.89094 -20.29907 -19.05354 -18.58891 -18.12540 -17.62339 -17.30435 -16.57516 -16.50198 -16.32254 -15.84122 -15.75584 -15.47257 -15.22177 -15.14105 -14.85337 -14.66897 -14.35907 -14.24730 -14.10435 -13.91724 -13.54976 -13.33466 -13.28987 -13.05574 -12.82205 -12.56237 -12.49800 -12.46902 -12.21869 -12.11649 -11.96518 -11.76825 -11.72565 -11.65345 -11.56047 -11.36576 -10.90031 -10.70563 -10.56237 -10.43607 -9.66833 -9.42056 -8.75756 -7.83973 -5.24397 1.41096 1.46686 1.48667 1.56962 1.96017 2.07773 2.34446 2.53246 3.23812 3.30015 3.43950 3.64663 3.74470 3.80951 3.82047 3.96993 4.03200 4.07968 4.13552 4.24763 4.32727 4.46453 4.47994 4.59592 4.60268 4.62811 4.80025 4.82738 4.85196 4.89370 4.94348 5.00300 5.02542 5.07963 5.10214 5.18615 5.30510 5.36231 5.37894 5.43669 5.45904 5.50780 5.65959 5.74011 5.79025 6.01506 6.36044 6.68215 6.92791 7.18217 7.36456 7.72321 7.90754 8.34352 9.21473 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.020475 B = 0.002614 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.166536 B =10706.998591 C =11173.046720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.611 5.611 3 C -0.263 4.263 4 H 0.063 0.937 5 C -0.046 4.046 6 N -0.928 5.928 7 Si 0.959 3.041 8 H -0.287 1.287 9 H -0.294 1.294 10 H -0.274 1.274 11 C 0.162 3.838 12 C -0.105 4.105 13 H 0.052 0.948 14 C -0.106 4.106 15 C 0.107 3.893 16 N -0.622 5.622 17 C 0.535 3.465 18 O -0.557 6.557 19 C 0.152 3.848 20 H 0.109 0.891 21 C -0.122 4.122 22 C -0.112 4.112 23 C -0.133 4.133 24 C 0.106 3.894 25 N -0.619 5.619 26 C 0.683 3.317 27 N -0.848 5.848 28 O -0.607 6.607 29 C 0.128 3.872 30 H 0.007 0.993 31 H 0.022 0.978 32 H 0.027 0.973 33 H 0.248 0.752 34 H 0.041 0.959 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.049 0.951 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.109 0.891 45 H 0.052 0.948 46 H 0.096 0.904 47 H 0.103 0.897 48 H 0.411 0.589 49 H 0.417 0.583 50 H 0.049 0.951 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.292 -24.440 15.969 29.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.334 5.334 3 C -0.393 4.393 4 H 0.081 0.919 5 C -0.242 4.242 6 N -0.575 5.575 7 Si 0.788 3.212 8 H -0.214 1.214 9 H -0.221 1.221 10 H -0.199 1.199 11 C 0.035 3.965 12 C -0.127 4.127 13 H 0.071 0.929 14 C -0.144 4.144 15 C -0.015 4.015 16 N -0.358 5.358 17 C 0.324 3.676 18 O -0.434 6.434 19 C 0.044 3.956 20 H 0.127 0.873 21 C -0.161 4.161 22 C -0.149 4.149 23 C -0.171 4.171 24 C -0.015 4.015 25 N -0.359 5.359 26 C 0.383 3.617 27 N -0.421 5.421 28 O -0.486 6.486 29 C 0.004 3.996 30 H 0.025 0.975 31 H 0.041 0.959 32 H 0.045 0.955 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.068 0.932 41 H 0.097 0.903 42 H 0.105 0.895 43 H 0.099 0.901 44 H 0.128 0.872 45 H 0.071 0.929 46 H 0.114 0.886 47 H 0.121 0.879 48 H 0.244 0.756 49 H 0.249 0.751 50 H 0.067 0.933 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.018 -23.994 15.298 28.474 hybrid contribution 0.493 0.940 -0.505 1.176 sum 1.511 -23.053 14.792 27.433 Atomic orbital electron populations 1.20570 0.82435 0.96720 0.97235 1.44142 1.02223 1.01277 1.85711 1.19462 0.97845 0.86455 1.35556 0.91889 1.25577 0.99185 1.01140 0.98321 1.70218 1.23595 1.27350 1.36292 0.85370 0.78179 0.80564 0.77056 1.21441 1.22125 1.19861 1.20834 0.95661 0.87181 0.92811 1.22860 0.95432 0.94384 0.99978 0.92916 1.22457 0.96742 0.97694 0.97486 1.22140 0.82536 0.98034 0.98813 1.48513 1.18007 1.46340 1.22913 1.20194 0.84389 0.77235 0.85732 1.90644 1.24152 1.59023 1.69574 1.21062 1.01632 0.80520 0.92344 0.87307 1.21860 0.98122 1.01378 0.94724 1.21517 1.03417 0.95053 0.94933 1.21949 0.99481 0.96157 0.99552 1.22073 1.00902 0.95742 0.82758 1.47142 1.75083 1.04711 1.08987 1.16446 0.78161 0.83456 0.83666 1.42929 1.71927 1.04462 1.22752 1.91210 1.54721 1.64275 1.38395 1.21974 0.98581 0.93124 0.85907 0.97473 0.95938 0.95468 0.94258 0.94037 0.92113 0.91148 0.90552 0.90010 0.90219 0.93204 0.90288 0.89478 0.90065 0.87221 0.92926 0.88577 0.87886 0.75593 0.75088 0.93291 0.92302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.43 8.51 127.77 1.09 9.52 16 2 N -0.61 -30.57 2.89 -726.94 -2.10 -32.67 16 3 C -0.26 -14.62 9.63 84.03 0.81 -13.81 16 4 H 0.06 3.50 7.89 -2.91 -0.02 3.48 16 5 C -0.05 -2.61 4.90 84.86 0.42 -2.19 16 6 N -0.93 -54.10 11.05 21.65 0.24 -53.86 16 7 Si 0.96 45.65 29.59 68.60 2.03 47.68 16 8 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 9 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 10 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 11 C 0.16 6.73 5.21 86.38 0.45 7.18 16 12 C -0.10 -4.03 3.26 -9.40 -0.03 -4.07 16 13 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 14 C -0.11 -3.47 5.70 31.79 0.18 -3.29 16 15 C 0.11 2.92 5.81 86.73 0.50 3.42 16 16 N -0.62 -21.13 3.33 -811.76 -2.70 -23.83 16 17 C 0.54 18.67 4.81 87.66 0.42 19.09 16 18 O -0.56 -24.75 14.18 21.39 0.30 -24.45 16 19 C 0.15 3.55 3.13 44.23 0.14 3.69 16 20 H 0.11 2.02 6.62 -2.39 -0.02 2.01 16 21 C -0.12 -2.41 5.33 30.67 0.16 -2.25 16 22 C -0.11 -1.18 5.88 30.62 0.18 -1.00 16 23 C -0.13 -1.05 6.08 30.67 0.19 -0.87 16 24 C 0.11 0.89 6.34 86.36 0.55 1.44 16 25 N -0.62 -12.28 2.97 -817.06 -2.43 -14.71 16 26 C 0.68 17.78 8.40 179.06 1.50 19.28 16 27 N -0.85 -12.63 8.72 -184.75 -1.61 -14.25 16 28 O -0.61 -23.56 12.29 20.44 0.25 -23.31 16 29 C 0.13 4.78 6.37 86.86 0.55 5.33 16 30 H 0.01 0.36 7.18 -2.39 -0.02 0.34 16 31 H 0.02 1.18 6.86 -2.39 -0.02 1.16 16 32 H 0.03 1.11 7.94 -2.38 -0.02 1.09 16 33 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 34 H 0.04 1.75 8.03 -2.39 -0.02 1.73 16 35 H 0.06 2.27 7.75 -2.39 -0.02 2.25 16 36 H 0.07 2.57 7.63 -2.39 -0.02 2.55 16 37 H 0.08 2.36 7.92 -2.38 -0.02 2.34 16 38 H 0.08 1.86 8.07 -2.39 -0.02 1.84 16 39 H 0.08 1.90 8.04 -2.39 -0.02 1.89 16 40 H 0.05 1.27 8.00 -2.39 -0.02 1.25 16 41 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 45 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 46 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 47 H 0.10 0.36 5.76 -2.38 -0.01 0.35 16 48 H 0.41 2.67 6.45 -92.71 -0.60 2.07 16 49 H 0.42 5.85 8.93 -92.70 -0.83 5.02 16 50 H 0.05 2.00 8.04 -2.39 -0.02 1.98 16 51 H 0.06 2.20 8.04 -2.39 -0.02 2.18 16 Total: -1.00 -83.31 390.17 0.61 -82.70 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -0.49 Total: 15.22 kcal Atomic # 6 Polarization: 34.37 SS G_CDS: 7.11 Total: 41.48 kcal Atomic # 7 Polarization: -130.71 SS G_CDS: -8.60 Total: -139.31 kcal Atomic # 8 Polarization: -48.32 SS G_CDS: 0.55 Total: -47.76 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -83.31 0.61 -82.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267593237.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.934 kcal (2) G-P(sol) polarization free energy of solvation -83.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds