Wall clock time and date at job start Tue Mar 31 2020 21:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99905 * 2 1 4 4 H 1.48504 * 109.46806 * 270.00142 * 3 2 1 5 5 H 1.48499 * 109.47121 * 29.99577 * 3 2 1 6 6 H 1.48490 * 109.47524 * 150.00262 * 3 2 1 7 7 C 1.38812 * 120.00299 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99647 * 0.02562 * 7 2 1 9 9 N 1.36932 * 119.99990 * 179.97438 * 7 2 1 10 10 C 1.46502 * 119.99981 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47392 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.47092 * 64.99772 * 11 10 9 13 13 N 1.46506 * 109.47031 * 305.00214 * 11 10 9 14 14 C 1.34772 * 119.99709 * 154.99908 * 13 11 10 15 15 O 1.21286 * 120.00476 * 359.97438 * 14 13 11 16 16 C 1.50705 * 119.99775 * 179.97438 * 14 13 11 17 17 C 1.52995 * 109.47378 * 179.97438 * 16 14 13 18 18 C 1.52996 * 109.47182 * 180.02562 * 17 16 14 19 19 H 1.09000 * 110.80833 * 51.37300 * 18 17 16 20 20 C 1.54818 * 110.90847 * 175.00210 * 18 17 16 21 21 C 1.54097 * 104.18808 * 139.11151 * 20 18 17 22 22 O 1.43745 * 107.29442 * 2.03270 * 21 20 18 23 23 C 1.44382 * 106.97554 * 333.48168 * 22 21 20 24 24 C 1.52997 * 109.47413 * 184.99825 * 11 10 9 25 25 C 1.53005 * 109.47018 * 300.00088 * 24 11 10 26 26 C 1.52999 * 109.46954 * 179.97438 * 25 24 11 27 27 C 1.53003 * 109.46951 * 60.00367 * 26 25 24 28 28 C 1.53005 * 109.46992 * 299.99610 * 27 26 25 29 29 C 1.52997 * 109.47018 * 60.00015 * 28 27 26 30 30 H 0.97004 * 120.00172 * 359.97438 * 1 2 3 31 31 H 0.97003 * 120.00472 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.47289 * 59.99760 * 10 9 7 33 33 H 1.08996 * 109.46678 * 300.00177 * 10 9 7 34 34 H 0.96994 * 119.99639 * 334.99253 * 13 11 10 35 35 H 1.09007 * 109.46603 * 59.99900 * 16 14 13 36 36 H 1.08996 * 109.47083 * 300.00388 * 16 14 13 37 37 H 1.09007 * 109.47163 * 60.00454 * 17 16 14 38 38 H 1.09000 * 109.47176 * 300.00723 * 17 16 14 39 39 H 1.09004 * 110.48564 * 20.43861 * 20 18 17 40 40 H 1.08989 * 110.60109 * 257.84964 * 20 18 17 41 41 H 1.08998 * 109.88273 * 242.60534 * 21 20 18 42 42 H 1.08997 * 109.87725 * 121.45198 * 21 20 18 43 43 H 1.08999 * 110.61481 * 158.56165 * 23 22 21 44 44 H 1.08997 * 110.62085 * 281.56061 * 23 22 21 45 45 H 1.08998 * 109.47035 * 59.99913 * 24 11 10 46 46 H 1.08998 * 109.47074 * 299.99800 * 25 24 11 47 47 H 1.09005 * 109.46856 * 60.00030 * 25 24 11 48 48 H 1.08998 * 109.47374 * 299.99993 * 26 25 24 49 49 H 1.08995 * 109.46924 * 179.97438 * 26 25 24 50 50 H 1.09004 * 109.46909 * 180.02562 * 27 26 25 51 51 H 1.08998 * 109.47387 * 59.99633 * 27 26 25 52 52 H 1.08998 * 109.47074 * 300.00215 * 28 27 26 53 53 H 1.08999 * 109.47009 * 180.02562 * 28 27 26 54 54 H 1.09004 * 109.47066 * 179.97438 * 29 28 27 55 55 H 1.08998 * 109.47035 * 60.00176 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4403 0.6999 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3796 -1.2020 0.0000 10 6 4.1122 -2.4707 0.0000 11 6 5.6164 -2.1912 -0.0013 12 1 5.8950 -1.6973 0.9296 13 7 5.9509 -1.3235 -1.1334 14 6 7.0488 -0.5435 -1.0832 15 8 7.7597 -0.5595 -0.1007 16 6 7.3932 0.3487 -2.2479 17 6 8.6759 1.1221 -1.9362 18 6 9.0251 2.0282 -3.1185 19 1 8.1675 2.6360 -3.4071 20 6 10.2479 2.9190 -2.7895 21 6 11.0786 2.9145 -4.0874 22 8 10.3542 2.1373 -5.0557 23 6 9.5430 1.1967 -4.3197 24 6 6.3804 -3.5108 -0.1270 25 6 6.0311 -4.4169 1.0554 26 6 6.7945 -5.7368 0.9294 27 6 8.2989 -5.4576 0.9278 28 6 8.6482 -4.5515 -0.2545 29 6 7.8847 -3.2317 -0.1286 30 1 -0.4850 0.8401 0.0004 31 1 3.8647 -0.3620 -0.0011 32 1 3.8485 -3.0426 -0.8897 33 1 3.8492 -3.0421 0.8902 34 1 5.3822 -1.3105 -1.9190 35 1 6.5782 1.0517 -2.4204 36 1 7.5429 -0.2598 -3.1398 37 1 9.4911 0.4192 -1.7635 38 1 8.5257 1.7305 -1.0444 39 1 10.8218 2.4907 -1.9678 40 1 9.9294 3.9320 -2.5439 41 1 12.0527 2.4617 -3.9025 42 1 11.2046 3.9345 -4.4503 43 1 8.7114 0.8464 -4.9310 44 1 10.1466 0.3576 -3.9738 45 1 6.1018 -4.0046 -1.0579 46 1 6.3096 -3.9231 1.9863 47 1 4.9594 -4.6161 1.0563 48 1 6.5156 -6.2305 -0.0015 49 1 6.5461 -6.3821 1.7719 50 1 8.8428 -6.3979 0.8376 51 1 8.5778 -4.9639 1.8587 52 1 8.3693 -5.0451 -1.1854 53 1 9.7200 -4.3530 -0.2559 54 1 8.1339 -2.5859 -0.9707 55 1 8.1636 -2.7380 0.8023 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268119074.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:13 Heat of formation + Delta-G solvation = -128.318477 kcal Electronic energy + Delta-G solvation = -30944.045344 eV Core-core repulsion = 26978.663352 eV Total energy + Delta-G solvation = -3965.381992 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.37709 -40.37870 -39.23120 -37.34672 -35.53854 -35.28072 -33.39655 -32.51138 -31.74996 -31.42056 -29.60530 -28.75400 -25.88586 -24.97287 -23.77057 -23.26226 -22.91591 -21.83267 -21.34528 -21.19202 -20.57469 -19.73896 -17.96819 -17.54163 -17.18074 -17.05537 -16.58316 -16.48609 -16.25266 -15.77473 -15.61618 -15.17141 -14.97752 -14.91681 -14.83189 -14.67187 -14.54287 -14.06840 -13.92804 -13.80361 -13.63865 -13.15458 -13.14905 -12.93968 -12.91873 -12.70879 -12.48628 -12.36653 -12.28068 -12.16613 -11.99980 -11.93919 -11.87061 -11.78842 -11.62969 -11.43877 -11.38397 -11.14215 -11.03059 -10.83620 -10.66062 -10.63656 -9.86706 -9.32200 -8.04429 -5.37710 1.33646 1.37328 1.43960 1.73838 2.27570 2.44993 3.01428 3.27397 3.44606 3.55618 3.70211 3.79749 3.84069 3.90462 3.96629 3.99471 4.09564 4.14819 4.26429 4.27825 4.34302 4.42193 4.46602 4.49967 4.53853 4.63833 4.66086 4.69070 4.70921 4.72760 4.79660 4.80579 4.86116 4.87369 4.92287 5.01641 5.03870 5.05853 5.14196 5.20938 5.21771 5.29644 5.31429 5.34708 5.36839 5.43047 5.47655 5.59857 5.68996 5.75237 5.92123 6.19131 6.64704 7.05420 7.34683 7.80789 7.99517 9.17005 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.006663 B = 0.004047 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4201.261581 B = 6917.151939 C =10594.517113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.058 4.058 3 Si 0.949 3.051 4 H -0.268 1.268 5 H -0.298 1.298 6 H -0.267 1.267 7 C -0.231 4.231 8 H 0.062 0.938 9 N -0.755 5.755 10 C 0.149 3.851 11 C 0.150 3.850 12 H 0.061 0.939 13 N -0.717 5.717 14 C 0.507 3.493 15 O -0.572 6.572 16 C -0.141 4.141 17 C -0.082 4.082 18 C -0.118 4.118 19 H 0.089 0.911 20 C -0.152 4.152 21 C 0.042 3.958 22 O -0.405 6.405 23 C 0.047 3.953 24 C -0.081 4.081 25 C -0.117 4.117 26 C -0.113 4.113 27 C -0.117 4.117 28 C -0.116 4.116 29 C -0.094 4.094 30 H 0.258 0.742 31 H 0.364 0.636 32 H 0.042 0.958 33 H 0.041 0.959 34 H 0.410 0.590 35 H 0.102 0.898 36 H 0.118 0.882 37 H 0.068 0.932 38 H 0.059 0.941 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.064 0.936 42 H 0.091 0.909 43 H 0.103 0.897 44 H 0.066 0.934 45 H 0.080 0.920 46 H 0.052 0.948 47 H 0.065 0.935 48 H 0.068 0.932 49 H 0.068 0.932 50 H 0.072 0.928 51 H 0.052 0.948 52 H 0.066 0.934 53 H 0.060 0.940 54 H 0.051 0.949 55 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.306 -3.384 -6.725 25.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.632 5.632 2 C -0.250 4.250 3 Si 0.777 3.223 4 H -0.193 1.193 5 H -0.225 1.225 6 H -0.192 1.192 7 C -0.362 4.362 8 H 0.079 0.921 9 N -0.401 5.401 10 C 0.023 3.977 11 C 0.045 3.955 12 H 0.079 0.921 13 N -0.368 5.368 14 C 0.296 3.704 15 O -0.451 6.451 16 C -0.181 4.181 17 C -0.120 4.120 18 C -0.137 4.137 19 H 0.107 0.893 20 C -0.190 4.190 21 C -0.034 4.034 22 O -0.325 6.325 23 C -0.029 4.029 24 C -0.101 4.101 25 C -0.155 4.155 26 C -0.150 4.150 27 C -0.155 4.155 28 C -0.153 4.153 29 C -0.131 4.131 30 H 0.067 0.933 31 H 0.197 0.803 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.246 0.754 35 H 0.121 0.879 36 H 0.136 0.864 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.082 0.918 42 H 0.109 0.891 43 H 0.121 0.879 44 H 0.084 0.916 45 H 0.098 0.902 46 H 0.071 0.929 47 H 0.083 0.917 48 H 0.086 0.914 49 H 0.087 0.913 50 H 0.091 0.909 51 H 0.071 0.929 52 H 0.084 0.916 53 H 0.079 0.921 54 H 0.070 0.930 55 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 24.621 -3.477 -6.255 25.640 hybrid contribution -0.543 1.228 0.277 1.371 sum 24.077 -2.249 -5.978 24.910 Atomic orbital electron populations 1.69867 1.06991 1.26610 1.59705 1.25408 0.95967 1.00859 1.02774 0.85500 0.78061 0.80267 0.78448 1.19339 1.22536 1.19221 1.19030 0.82509 0.93543 1.41096 0.92051 1.42684 1.02499 1.03963 1.90983 1.21123 0.88943 0.87846 0.99797 1.21104 0.93410 0.91310 0.89690 0.92080 1.46073 1.27152 1.43010 1.20533 1.21158 0.80000 0.79926 0.89363 1.90682 1.51182 1.67968 1.35302 1.21795 1.00380 0.98963 0.96931 1.21166 0.96212 0.97574 0.97054 1.22738 0.98861 0.96856 0.95238 0.89287 1.23003 0.96324 1.01387 0.98267 1.23284 0.95161 0.96717 0.88265 1.88839 1.60744 1.50996 1.31894 1.23801 0.94551 0.91906 0.92680 1.21423 0.95246 0.93697 0.99765 1.21620 1.00400 0.96097 0.97372 1.21492 0.94907 0.96250 1.02394 1.21533 0.96156 0.99631 0.98168 1.21543 0.99475 0.95448 0.98876 1.21461 0.93728 0.96767 1.01163 0.93322 0.80266 0.94008 0.94113 0.75431 0.87945 0.86399 0.91364 0.92246 0.90120 0.89753 0.91783 0.89109 0.87889 0.91563 0.90167 0.92925 0.91676 0.91370 0.91318 0.90905 0.92869 0.91570 0.92116 0.93015 0.93712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.90 13.97 21.65 0.30 -61.60 16 2 C -0.06 -3.37 5.50 84.86 0.47 -2.91 16 3 Si 0.95 45.05 27.73 68.60 1.90 46.96 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 6 H -0.27 -12.01 6.52 99.48 0.65 -11.36 16 7 C -0.23 -12.77 10.47 84.03 0.88 -11.89 16 8 H 0.06 3.70 8.06 -2.91 -0.02 3.68 16 9 N -0.76 -33.80 5.24 -343.45 -1.80 -35.60 16 10 C 0.15 5.26 5.31 86.38 0.46 5.72 16 11 C 0.15 4.43 2.00 44.99 0.09 4.52 16 12 H 0.06 2.14 7.58 -2.39 -0.02 2.12 16 13 N -0.72 -18.80 4.41 -442.53 -1.95 -20.75 16 14 C 0.51 13.15 6.18 87.66 0.54 13.69 16 15 O -0.57 -18.39 13.11 -3.05 -0.04 -18.43 16 16 C -0.14 -2.55 5.60 29.85 0.17 -2.38 16 17 C -0.08 -1.47 3.90 30.59 0.12 -1.35 16 18 C -0.12 -1.79 3.09 -9.49 -0.03 -1.82 16 19 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 20 C -0.15 -2.12 6.60 31.59 0.21 -1.91 16 21 C 0.04 0.62 7.70 72.35 0.56 1.18 16 22 O -0.41 -8.00 11.52 -148.98 -1.72 -9.72 16 23 C 0.05 0.72 6.63 72.67 0.48 1.20 16 24 C -0.08 -1.95 1.96 -10.79 -0.02 -1.98 16 25 C -0.12 -2.69 4.85 30.60 0.15 -2.54 16 26 C -0.11 -2.09 5.92 30.60 0.18 -1.91 16 27 C -0.12 -2.09 5.92 30.60 0.18 -1.91 16 28 C -0.12 -2.21 5.92 30.60 0.18 -2.03 16 29 C -0.09 -2.24 3.73 30.59 0.11 -2.12 16 30 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 31 H 0.36 16.04 5.20 -92.71 -0.48 15.55 16 32 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 33 H 0.04 1.49 6.71 -2.39 -0.02 1.47 16 34 H 0.41 9.74 8.60 -92.71 -0.80 8.94 16 35 H 0.10 1.75 8.14 -2.38 -0.02 1.73 16 36 H 0.12 1.52 7.73 -2.39 -0.02 1.50 16 37 H 0.07 1.29 7.94 -2.38 -0.02 1.27 16 38 H 0.06 1.26 8.10 -2.39 -0.02 1.24 16 39 H 0.08 1.08 7.86 -2.39 -0.02 1.07 16 40 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.07 0.96 7.93 -2.39 -0.02 0.94 16 45 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 47 H 0.06 1.56 6.54 -2.38 -0.02 1.55 16 48 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 49 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 50 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 51 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 52 H 0.07 1.15 8.14 -2.39 -0.02 1.14 16 53 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 54 H 0.05 1.30 5.78 -2.38 -0.01 1.29 16 55 H 0.04 1.29 7.53 -2.39 -0.02 1.27 16 Total: -1.00 -69.86 414.01 0.95 -68.91 By element: Atomic # 1 Polarization: 39.14 SS G_CDS: -0.48 Total: 38.66 kcal Atomic # 6 Polarization: -13.16 SS G_CDS: 4.73 Total: -8.43 kcal Atomic # 7 Polarization: -114.51 SS G_CDS: -3.45 Total: -117.95 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: -1.76 Total: -28.14 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.90 Total: 46.96 kcal Total: -69.86 0.95 -68.91 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268119074.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.408 kcal (2) G-P(sol) polarization free energy of solvation -69.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds