Wall clock time and date at job start Tue Mar 31 2020 21:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99950 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00140 * 3 2 1 5 5 H 1.48499 * 109.47026 * 209.99987 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00023 * 3 2 1 7 7 C 1.38811 * 119.99540 * 180.27867 * 2 1 3 8 8 H 1.08001 * 119.99999 * 359.71854 * 7 2 1 9 9 N 1.36936 * 119.99842 * 179.72505 * 7 2 1 10 10 C 1.46493 * 120.00314 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47400 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.47411 * 64.99998 * 11 10 9 13 13 N 1.46498 * 109.47119 * 304.99721 * 11 10 9 14 14 C 1.34773 * 120.00226 * 154.99968 * 13 11 10 15 15 O 1.21289 * 120.00210 * 0.02562 * 14 13 11 16 16 C 1.50696 * 120.00197 * 179.97438 * 14 13 11 17 17 C 1.53002 * 109.47433 * 179.97438 * 16 14 13 18 18 C 1.53000 * 109.47260 * 180.02562 * 17 16 14 19 19 H 1.08996 * 110.81003 * 308.63241 * 18 17 16 20 20 C 1.54814 * 110.90721 * 184.99729 * 18 17 16 21 21 C 1.54096 * 104.18937 * 220.92349 * 20 18 17 22 22 O 1.43741 * 107.29425 * 357.97006 * 21 20 18 23 23 C 1.44384 * 106.97632 * 26.51592 * 22 21 20 24 24 C 1.53008 * 109.47204 * 184.99907 * 11 10 9 25 25 C 1.53000 * 109.46875 * 299.99709 * 24 11 10 26 26 C 1.52999 * 109.46950 * 179.97438 * 25 24 11 27 27 C 1.53003 * 109.46740 * 60.00333 * 26 25 24 28 28 C 1.53000 * 109.47127 * 299.99558 * 27 26 25 29 29 C 1.52999 * 109.46950 * 60.00570 * 28 27 26 30 30 H 0.96999 * 119.99889 * 359.97438 * 1 2 3 31 31 H 0.97000 * 119.99646 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.46794 * 299.99871 * 10 9 7 33 33 H 1.09000 * 109.47559 * 59.99394 * 10 9 7 34 34 H 0.97003 * 119.99675 * 335.00117 * 13 11 10 35 35 H 1.09004 * 109.47567 * 300.00320 * 16 14 13 36 36 H 1.09006 * 109.46800 * 60.00146 * 16 14 13 37 37 H 1.08996 * 109.47101 * 300.00378 * 17 16 14 38 38 H 1.08996 * 109.46875 * 60.00204 * 17 16 14 39 39 H 1.08996 * 110.48932 * 339.60551 * 20 18 17 40 40 H 1.09000 * 110.48430 * 102.11333 * 20 18 17 41 41 H 1.08997 * 109.87900 * 117.39788 * 21 20 18 42 42 H 1.08999 * 109.87919 * 238.55174 * 21 20 18 43 43 H 1.09000 * 110.61898 * 201.43403 * 23 22 21 44 44 H 1.09000 * 110.61753 * 78.43787 * 23 22 21 45 45 H 1.08997 * 109.46862 * 59.99755 * 24 11 10 46 46 H 1.08997 * 109.47352 * 300.00262 * 25 24 11 47 47 H 1.09001 * 109.46997 * 60.00191 * 25 24 11 48 48 H 1.08997 * 109.47453 * 300.00379 * 26 25 24 49 49 H 1.09003 * 109.47182 * 179.97438 * 26 25 24 50 50 H 1.09001 * 109.46706 * 179.97438 * 27 26 25 51 51 H 1.08997 * 109.47532 * 60.00168 * 27 26 25 52 52 H 1.08997 * 109.47352 * 300.00129 * 28 27 26 53 53 H 1.09001 * 109.46997 * 180.02562 * 28 27 26 54 54 H 1.09003 * 109.47182 * 180.02562 * 29 28 27 55 55 H 1.08997 * 109.47453 * 59.99621 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 1.4001 5 1 3.5478 1.4402 -0.7000 6 1 1.4478 2.6527 -0.7000 7 6 2.0102 -1.2022 -0.0058 8 1 1.4701 -2.1375 -0.0058 9 7 3.3795 -1.2022 -0.0115 10 6 4.1120 -2.4709 -0.0183 11 6 5.6162 -2.1914 -0.0244 12 1 5.8984 -1.7005 0.9070 13 7 5.9465 -1.3203 -1.1550 14 6 7.0446 -0.5404 -1.1066 15 8 7.7598 -0.5601 -0.1272 16 6 7.3846 0.3552 -2.2699 17 6 8.6686 1.1276 -1.9607 18 6 9.0135 2.0374 -3.1415 19 1 9.0156 1.4755 -4.0755 20 6 10.3737 2.7418 -2.9173 21 6 10.1410 4.1805 -3.4178 22 8 8.7953 4.2464 -3.9186 23 6 8.0354 3.2373 -3.2192 24 6 6.3796 -3.5107 -0.1571 25 6 6.0348 -4.4204 1.0238 26 6 6.7976 -5.7400 0.8907 27 6 8.3020 -5.4609 0.8843 28 6 8.6469 -4.5511 -0.2965 29 6 7.8840 -3.2316 -0.1635 30 1 -0.4850 0.8400 0.0004 31 1 3.8645 -0.3622 -0.0119 32 1 3.8524 -3.0450 0.8712 33 1 3.8450 -3.0400 -0.9087 34 1 5.3747 -1.3048 -1.9384 35 1 7.5310 -0.2505 -3.1642 36 1 6.5691 1.0589 -2.4371 37 1 8.5218 1.7333 -1.0665 38 1 9.4843 0.4243 -1.7931 39 1 10.6327 2.7433 -1.8586 40 1 11.1559 2.2550 -3.4997 41 1 10.2649 4.8839 -2.5944 42 1 10.8453 4.4137 -4.2163 43 1 7.1426 2.9689 -3.7841 44 1 7.7694 3.5811 -2.2197 45 1 6.0975 -4.0016 -1.0885 46 1 6.3168 -3.9295 1.9551 47 1 4.9631 -4.6196 1.0281 48 1 6.5152 -6.2307 -0.0406 49 1 6.5523 -6.3879 1.7322 50 1 8.8455 -6.4010 0.7900 51 1 8.5845 -4.9702 1.8157 52 1 8.3644 -5.0419 -1.2279 53 1 9.7186 -4.3527 -0.3014 54 1 8.1293 -2.5836 -1.0050 55 1 8.1664 -2.7409 0.7679 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268119076.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:16 Heat of formation + Delta-G solvation = -128.139304 kcal Electronic energy + Delta-G solvation = -30956.473654 eV Core-core repulsion = 26991.099431 eV Total energy + Delta-G solvation = -3965.374223 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.37494 -40.39313 -39.22905 -37.34561 -35.54323 -35.27939 -33.39417 -32.50982 -31.74949 -31.41702 -29.61801 -28.75393 -25.89119 -24.98106 -23.76608 -23.27342 -22.91447 -21.83189 -21.33894 -21.19211 -20.57244 -19.74011 -17.96359 -17.56492 -17.21900 -16.97511 -16.62578 -16.50880 -16.22504 -15.86468 -15.54868 -15.16263 -14.98884 -14.91249 -14.80662 -14.69556 -14.54684 -14.07283 -13.96353 -13.70101 -13.66082 -13.20536 -13.15356 -12.94982 -12.92153 -12.70205 -12.48545 -12.37662 -12.30745 -12.11487 -12.01434 -11.91613 -11.86641 -11.77018 -11.63548 -11.43152 -11.38658 -11.14735 -11.04476 -10.83204 -10.67026 -10.64956 -9.86249 -9.32080 -8.04435 -5.37673 1.32852 1.37548 1.43893 1.73980 2.27782 2.45032 2.99786 3.28059 3.44444 3.54866 3.71280 3.78618 3.82765 3.90731 3.96473 3.99507 4.09866 4.15036 4.25210 4.28512 4.33445 4.42145 4.47052 4.50439 4.53006 4.63239 4.66391 4.69343 4.70875 4.73012 4.79164 4.80479 4.85040 4.86249 4.92443 5.01820 5.02726 5.05853 5.14547 5.21178 5.21425 5.30077 5.31832 5.35036 5.37156 5.43314 5.48013 5.60178 5.69306 5.75368 5.90163 6.19121 6.64642 7.05565 7.34630 7.80910 7.99545 9.16929 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.006376 B = 0.004311 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4390.527903 B = 6493.713728 C =10565.068685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.057 4.057 3 Si 0.947 3.053 4 H -0.289 1.289 5 H -0.249 1.249 6 H -0.294 1.294 7 C -0.231 4.231 8 H 0.062 0.938 9 N -0.755 5.755 10 C 0.149 3.851 11 C 0.150 3.850 12 H 0.062 0.938 13 N -0.716 5.716 14 C 0.507 3.493 15 O -0.571 6.571 16 C -0.141 4.141 17 C -0.082 4.082 18 C -0.113 4.113 19 H 0.100 0.900 20 C -0.149 4.149 21 C 0.039 3.961 22 O -0.405 6.405 23 C 0.041 3.959 24 C -0.081 4.081 25 C -0.117 4.117 26 C -0.113 4.113 27 C -0.117 4.117 28 C -0.116 4.116 29 C -0.093 4.093 30 H 0.258 0.742 31 H 0.364 0.636 32 H 0.042 0.958 33 H 0.041 0.959 34 H 0.409 0.591 35 H 0.120 0.880 36 H 0.098 0.902 37 H 0.055 0.945 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.093 0.907 41 H 0.058 0.942 42 H 0.095 0.905 43 H 0.100 0.900 44 H 0.055 0.945 45 H 0.079 0.921 46 H 0.052 0.948 47 H 0.065 0.935 48 H 0.067 0.933 49 H 0.068 0.932 50 H 0.072 0.928 51 H 0.053 0.947 52 H 0.065 0.935 53 H 0.060 0.940 54 H 0.051 0.949 55 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.760 -3.877 -7.089 26.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.632 5.632 2 C -0.249 4.249 3 Si 0.775 3.225 4 H -0.216 1.216 5 H -0.174 1.174 6 H -0.220 1.220 7 C -0.362 4.362 8 H 0.080 0.920 9 N -0.401 5.401 10 C 0.023 3.977 11 C 0.044 3.956 12 H 0.080 0.920 13 N -0.367 5.367 14 C 0.296 3.704 15 O -0.451 6.451 16 C -0.181 4.181 17 C -0.120 4.120 18 C -0.132 4.132 19 H 0.118 0.882 20 C -0.187 4.187 21 C -0.037 4.037 22 O -0.325 6.325 23 C -0.036 4.036 24 C -0.101 4.101 25 C -0.155 4.155 26 C -0.151 4.151 27 C -0.155 4.155 28 C -0.153 4.153 29 C -0.131 4.131 30 H 0.067 0.933 31 H 0.197 0.803 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.245 0.755 35 H 0.138 0.862 36 H 0.117 0.883 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.111 0.889 41 H 0.077 0.923 42 H 0.113 0.887 43 H 0.118 0.882 44 H 0.074 0.926 45 H 0.098 0.902 46 H 0.071 0.929 47 H 0.083 0.917 48 H 0.086 0.914 49 H 0.087 0.913 50 H 0.091 0.909 51 H 0.071 0.929 52 H 0.084 0.916 53 H 0.079 0.921 54 H 0.070 0.930 55 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 24.989 -3.850 -6.554 26.120 hybrid contribution -0.551 1.184 0.242 1.329 sum 24.438 -2.665 -6.312 25.381 Atomic orbital electron populations 1.69866 1.06998 1.26585 1.59713 1.25394 0.95949 1.00801 1.02775 0.85534 0.78889 0.80372 0.77705 1.21611 1.17378 1.22030 1.19031 0.82524 0.93532 1.41065 0.92031 1.42678 1.02487 1.03968 1.90985 1.21123 0.88953 0.87844 0.99792 1.21115 0.93431 0.91264 0.89740 0.91955 1.46075 1.27039 1.42870 1.20758 1.21147 0.80021 0.79953 0.89310 1.90681 1.50949 1.68047 1.35431 1.21792 1.00307 0.98846 0.97117 1.21176 0.96309 0.97683 0.96871 1.22727 0.94637 0.96076 0.99747 0.88223 1.22996 0.97910 0.94946 1.02856 1.23321 0.83919 0.96980 0.99505 1.88843 1.22031 1.57962 1.63646 1.23822 0.95698 0.86947 0.97101 1.21425 0.95275 0.93682 0.99746 1.21619 1.00411 0.96074 0.97391 1.21494 0.94926 0.96261 1.02375 1.21531 0.96150 0.99619 0.98193 1.21540 0.99504 0.95429 0.98856 1.21463 0.93712 0.96768 1.01172 0.93346 0.80253 0.94022 0.94116 0.75497 0.86164 0.88324 0.92635 0.90910 0.90366 0.88873 0.92325 0.88665 0.88231 0.92623 0.90225 0.92879 0.91681 0.91394 0.91322 0.90912 0.92856 0.91597 0.92085 0.93022 0.93667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.05 13.97 21.65 0.30 -61.75 16 2 C -0.06 -3.32 5.50 84.86 0.47 -2.86 16 3 Si 0.95 45.17 27.74 68.60 1.90 47.08 16 4 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 5 H -0.25 -10.52 6.51 99.48 0.65 -9.87 16 6 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 7 C -0.23 -12.76 10.47 84.03 0.88 -11.88 16 8 H 0.06 3.71 8.06 -2.91 -0.02 3.69 16 9 N -0.76 -33.73 5.24 -343.47 -1.80 -35.53 16 10 C 0.15 5.25 5.31 86.38 0.46 5.70 16 11 C 0.15 4.40 2.00 44.99 0.09 4.49 16 12 H 0.06 2.16 7.58 -2.39 -0.02 2.14 16 13 N -0.72 -18.85 4.41 -442.53 -1.95 -20.80 16 14 C 0.51 13.16 6.19 87.66 0.54 13.71 16 15 O -0.57 -18.29 13.11 -3.06 -0.04 -18.33 16 16 C -0.14 -2.56 5.60 29.85 0.17 -2.39 16 17 C -0.08 -1.47 3.90 30.59 0.12 -1.35 16 18 C -0.11 -1.69 3.10 -9.49 -0.03 -1.72 16 19 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 20 C -0.15 -2.01 6.60 31.58 0.21 -1.80 16 21 C 0.04 0.61 7.70 72.35 0.56 1.17 16 22 O -0.41 -8.85 11.52 -148.98 -1.72 -10.56 16 23 C 0.04 0.75 6.63 72.67 0.48 1.23 16 24 C -0.08 -1.94 1.96 -10.79 -0.02 -1.97 16 25 C -0.12 -2.67 4.85 30.59 0.15 -2.53 16 26 C -0.11 -2.08 5.92 30.59 0.18 -1.89 16 27 C -0.12 -2.07 5.92 30.60 0.18 -1.89 16 28 C -0.12 -2.19 5.92 30.59 0.18 -2.01 16 29 C -0.09 -2.22 3.73 30.59 0.11 -2.11 16 30 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 31 H 0.36 15.98 5.19 -92.71 -0.48 15.50 16 32 H 0.04 1.51 6.71 -2.38 -0.02 1.50 16 33 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.41 9.85 8.60 -92.71 -0.80 9.05 16 35 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.10 1.74 7.72 -2.38 -0.02 1.72 16 37 H 0.05 1.20 7.94 -2.39 -0.02 1.18 16 38 H 0.07 1.34 8.10 -2.39 -0.02 1.32 16 39 H 0.08 1.06 7.86 -2.39 -0.02 1.04 16 40 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.06 1.10 7.93 -2.39 -0.02 1.08 16 45 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 46 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 47 H 0.06 1.55 6.54 -2.39 -0.02 1.54 16 48 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 49 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 50 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 51 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 52 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 53 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 54 H 0.05 1.29 5.78 -2.39 -0.01 1.28 16 55 H 0.04 1.29 7.53 -2.39 -0.02 1.28 16 Total: -1.00 -70.00 413.98 0.95 -69.05 By element: Atomic # 1 Polarization: 39.41 SS G_CDS: -0.48 Total: 38.93 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: 4.73 Total: -8.08 kcal Atomic # 7 Polarization: -114.63 SS G_CDS: -3.45 Total: -118.08 kcal Atomic # 8 Polarization: -27.14 SS G_CDS: -1.76 Total: -28.90 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.90 Total: 47.08 kcal Total: -70.00 0.95 -69.05 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268119076.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.091 kcal (2) G-P(sol) polarization free energy of solvation -69.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds