Wall clock time and date at job start Tue Mar 31 2020 20:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46901 * 110.99993 * 2 1 4 4 C 1.46901 * 111.00043 * 123.95701 * 2 1 3 5 5 C 1.53001 * 109.47226 * 75.66961 * 4 2 1 6 6 C 1.50704 * 115.55051 * 55.73527 * 5 4 2 7 7 O 1.21278 * 119.99866 * 245.74788 * 6 5 4 8 8 N 1.34775 * 120.00047 * 65.74194 * 6 5 4 9 9 C 1.46502 * 120.00049 * 174.86336 * 8 6 5 10 10 C 1.52994 * 109.47058 * 179.97438 * 9 8 6 11 11 C 1.53513 * 114.16911 * 174.99821 * 10 9 8 12 12 N 1.47481 * 87.93096 * 139.86787 * 11 10 9 13 13 C 1.46901 * 110.99765 * 221.30092 * 12 11 10 14 14 C 1.50697 * 109.47493 * 169.99957 * 13 12 11 15 15 O 1.21298 * 119.99889 * 359.97438 * 14 13 12 16 16 N 1.34772 * 120.00315 * 180.02562 * 14 13 12 17 17 C 1.37100 * 119.99742 * 180.02562 * 16 14 13 18 18 H 1.07994 * 120.00489 * 359.97438 * 17 16 14 19 19 C 1.38952 * 119.99802 * 179.97438 * 17 16 14 20 20 N 1.31414 * 119.99888 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00128 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47178 * 89.99895 * 21 19 17 23 23 H 1.48501 * 109.46908 * 209.99805 * 21 19 17 24 24 H 1.48500 * 109.47029 * 329.99368 * 21 19 17 25 25 C 1.47481 * 87.83559 * 332.98754 * 12 11 10 26 26 C 1.52998 * 117.50003 * 201.40458 * 5 4 2 27 27 C 1.53002 * 117.49917 * 270.06749 * 5 4 2 28 28 H 1.08994 * 109.46871 * 296.83412 * 1 2 3 29 29 H 1.09000 * 109.47002 * 56.83695 * 1 2 3 30 30 H 1.08996 * 109.47022 * 176.83478 * 1 2 3 31 31 H 1.09001 * 109.47072 * 183.95010 * 3 2 1 32 32 H 1.08992 * 109.47309 * 303.95837 * 3 2 1 33 33 H 1.08998 * 109.46955 * 63.95884 * 3 2 1 34 34 H 1.08995 * 109.47153 * 315.67137 * 4 2 1 35 35 H 1.09002 * 109.46941 * 195.66959 * 4 2 1 36 36 H 0.96998 * 119.99928 * 354.86838 * 8 6 5 37 37 H 1.09006 * 109.47071 * 59.99978 * 9 8 6 38 38 H 1.09003 * 109.46813 * 300.00581 * 9 8 6 39 39 H 1.09000 * 113.25663 * 42.05376 * 10 9 8 40 40 H 1.09000 * 113.47828 * 25.09623 * 11 10 9 41 41 H 1.08999 * 113.47798 * 254.62820 * 11 10 9 42 42 H 1.09003 * 109.47334 * 49.99088 * 13 12 11 43 43 H 1.09009 * 109.47345 * 289.99902 * 13 12 11 44 44 H 0.96998 * 119.99947 * 359.97438 * 16 14 13 45 45 H 0.97006 * 119.99978 * 180.02562 * 20 19 17 46 46 H 1.08999 * 113.47381 * 141.77466 * 25 12 11 47 47 H 1.08997 * 113.48184 * 272.24989 * 25 12 11 48 48 H 1.08993 * 117.49751 * 215.00430 * 26 5 4 49 49 H 1.08997 * 117.49940 * 0.02562 * 26 5 4 50 50 H 1.09005 * 117.49533 * 359.97324 * 27 5 4 51 51 H 1.08991 * 117.49962 * 144.97358 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.8449 -2.2627 0.8580 6 6 2.4798 -2.7527 -0.4180 7 8 1.7852 -3.1804 -1.3155 8 7 3.8193 -2.7154 -0.5618 9 6 4.4445 -3.2942 -1.7536 10 6 5.9622 -3.1201 -1.6689 11 6 6.7370 -3.7969 -2.8083 12 7 7.6175 -2.6142 -2.8403 13 6 7.9266 -2.2253 -4.2228 14 6 8.6161 -0.8854 -4.2256 15 8 8.8287 -0.3105 -3.1789 16 7 8.9957 -0.3252 -5.3911 17 6 9.6234 0.8936 -5.3935 18 1 9.8135 1.4051 -4.4615 19 6 10.0152 1.4709 -6.5952 20 7 9.7845 0.8484 -7.7293 21 14 10.8699 3.1319 -6.5986 22 1 12.3383 2.9332 -6.5015 23 1 10.5499 3.8506 -7.8581 24 1 10.4009 3.9323 -5.4391 25 6 6.4877 -1.8282 -2.3104 26 6 1.8517 -3.2100 2.0594 27 6 0.5472 -2.9381 1.3059 28 1 -0.3633 0.4639 0.9170 29 1 -0.3633 0.5622 -0.8603 30 1 -0.3633 -1.0261 -0.0567 31 1 3.0828 1.3432 -0.0708 32 1 1.5898 1.9163 -0.8523 33 1 1.7045 1.8723 0.9233 34 1 1.4394 -0.5070 2.0385 35 1 3.0495 -0.5272 1.2798 36 1 4.3695 -2.3055 0.1239 37 1 4.0700 -2.7872 -2.6429 38 1 4.2028 -4.3555 -1.8116 39 1 6.3636 -3.3205 -0.6756 40 1 6.1490 -3.9253 -3.7170 41 1 7.2478 -4.7102 -2.5034 42 1 7.0025 -2.1597 -4.7971 43 1 8.5814 -2.9718 -4.6725 44 1 8.8253 -0.7847 -6.2282 45 1 10.0583 1.2512 -8.5682 46 1 6.7871 -1.0732 -1.5835 47 1 5.8331 -1.4312 -3.0862 48 1 2.3153 -4.1875 1.9269 49 1 1.9629 -2.7670 3.0490 50 1 -0.1992 -2.3161 1.8003 51 1 0.1524 -3.7364 0.6777 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268867230.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:56 Heat of formation + Delta-G solvation = 1.039716 kcal Electronic energy + Delta-G solvation = -29455.114321 eV Core-core repulsion = 25391.801377 eV Total energy + Delta-G solvation = -4063.312944 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.58555 -40.00675 -37.97531 -37.64132 -36.02342 -34.78209 -33.87642 -31.36772 -30.81267 -28.50710 -27.82435 -27.39259 -25.76405 -25.02766 -23.64394 -22.82889 -22.47064 -22.00014 -20.22231 -19.27411 -19.02742 -17.86745 -17.22185 -16.37479 -16.15669 -15.91944 -15.60113 -15.48271 -15.25796 -14.99156 -14.89068 -14.58878 -14.36563 -14.17452 -13.81683 -13.59785 -13.30871 -12.86042 -12.79537 -12.59222 -12.42999 -12.28003 -12.22636 -12.06809 -12.00502 -11.83003 -11.72094 -11.47646 -11.32435 -11.07075 -10.80902 -10.66103 -10.46296 -10.40324 -10.38505 -10.20714 -9.82474 -9.49312 -9.11469 -8.70503 -8.65466 -8.23858 -7.95346 -6.40692 -3.81494 2.54289 2.97210 3.18323 3.24550 3.26755 3.32505 3.69552 3.90928 4.05875 4.23729 4.31094 4.36073 4.40658 4.49246 4.71544 4.75516 4.88437 4.96736 4.99467 5.12178 5.14056 5.16352 5.20541 5.24097 5.34619 5.35807 5.37794 5.45934 5.47445 5.51313 5.60933 5.65142 5.67944 5.69980 5.73240 5.75754 5.78468 5.85138 6.09085 6.23841 6.27570 6.40996 6.60523 6.67515 6.71357 7.23324 7.44315 7.55940 8.06679 8.19635 8.62513 9.18900 9.55304 10.07090 10.77138 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.013766 B = 0.002206 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.561701 B =12687.705523 C =14012.954377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.543 5.543 3 C 0.024 3.976 4 C 0.096 3.904 5 C -0.151 4.151 6 C 0.567 3.433 7 O -0.537 6.537 8 N -0.722 5.722 9 C 0.133 3.867 10 C -0.133 4.133 11 C 0.004 3.996 12 N -0.444 5.444 13 C 0.008 3.992 14 C 0.445 3.555 15 O -0.580 6.580 16 N -0.565 5.565 17 C -0.298 4.298 18 H 0.103 0.897 19 C 0.022 3.978 20 N -0.902 5.902 21 Si 0.930 3.070 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.270 1.270 25 C 0.020 3.980 26 C -0.157 4.157 27 C -0.146 4.146 28 H 0.022 0.978 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.024 0.976 34 H 0.047 0.953 35 H 0.082 0.918 36 H 0.401 0.599 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.106 0.894 40 H 0.070 0.930 41 H 0.086 0.914 42 H 0.056 0.944 43 H 0.091 0.909 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.089 0.911 47 H 0.067 0.933 48 H 0.101 0.899 49 H 0.103 0.897 50 H 0.100 0.900 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.962 -8.099 17.585 26.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.266 5.266 3 C -0.124 4.124 4 C -0.032 4.032 5 C -0.155 4.155 6 C 0.352 3.648 7 O -0.413 6.413 8 N -0.373 5.373 9 C 0.009 3.991 10 C -0.152 4.152 11 C -0.126 4.126 12 N -0.166 5.166 13 C -0.124 4.124 14 C 0.230 3.770 15 O -0.463 6.463 16 N -0.202 5.202 17 C -0.428 4.428 18 H 0.120 0.880 19 C -0.180 4.180 20 N -0.543 5.543 21 Si 0.757 3.243 22 H -0.204 1.204 23 H -0.209 1.209 24 H -0.194 1.194 25 C -0.109 4.109 26 C -0.195 4.195 27 C -0.184 4.184 28 H 0.041 0.959 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.043 0.957 34 H 0.065 0.935 35 H 0.100 0.900 36 H 0.235 0.765 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.125 0.875 40 H 0.088 0.912 41 H 0.105 0.895 42 H 0.074 0.926 43 H 0.109 0.891 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.108 0.892 47 H 0.085 0.915 48 H 0.119 0.881 49 H 0.122 0.878 50 H 0.118 0.882 51 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -17.423 -8.172 17.284 25.867 hybrid contribution -0.295 1.261 -0.274 1.324 sum -17.718 -6.911 17.011 25.516 Atomic orbital electron populations 1.22456 0.86988 1.02780 1.00161 1.61806 1.08399 1.13931 1.42496 1.22419 1.01162 0.88273 1.00539 1.21571 1.00765 0.89214 0.91662 1.21434 1.04158 0.94839 0.95070 1.19129 0.81747 0.76944 0.86951 1.90679 1.62283 1.46762 1.41602 1.45841 1.06815 1.60951 1.23676 1.21331 0.91073 0.98517 0.88136 1.23047 0.93087 0.98820 1.00283 1.23842 0.94456 0.96773 0.97481 1.68826 1.27545 1.03114 1.17112 1.22496 1.00488 0.98217 0.91156 1.19667 0.85197 0.87273 0.84867 1.90516 1.59861 1.64506 1.31451 1.41872 1.52147 1.19293 1.06864 1.19687 1.33318 0.95161 0.94612 0.87967 1.25264 0.98079 0.99956 0.94697 1.69616 1.47530 1.39389 0.97806 0.85858 0.79348 0.81406 0.77678 1.20391 1.20932 1.19445 1.23759 0.91631 0.96046 0.99430 1.23097 1.01392 0.99846 0.95142 1.23027 0.90398 1.02816 1.02117 0.95908 0.91417 0.90725 0.90956 0.91076 0.95705 0.93519 0.89977 0.76531 0.91211 0.91395 0.87543 0.91197 0.89516 0.92643 0.89090 0.77492 0.91880 0.89207 0.91489 0.88080 0.87839 0.88204 0.87737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.33 60.07 0.56 0.77 16 2 N -0.54 -5.21 4.66 -251.26 -1.17 -6.38 16 3 C 0.02 0.20 9.51 60.07 0.57 0.78 16 4 C 0.10 0.75 4.89 -3.82 -0.02 0.73 16 5 C -0.15 -1.28 1.82 -155.66 -0.28 -1.57 16 6 C 0.57 6.61 6.79 -10.98 -0.07 6.54 16 7 O -0.54 -8.44 16.71 5.56 0.09 -8.34 16 8 N -0.72 -7.23 5.55 -60.29 -0.33 -7.57 16 9 C 0.13 1.43 5.60 -4.04 -0.02 1.41 16 10 C -0.13 -1.46 4.08 -90.09 -0.37 -1.83 16 11 C 0.00 0.05 7.29 -7.54 -0.05 0.00 16 12 N -0.44 -7.35 6.06 -246.08 -1.49 -8.84 16 13 C 0.01 0.15 5.31 -4.98 -0.03 0.13 16 14 C 0.44 10.68 7.62 -10.99 -0.08 10.60 16 15 O -0.58 -15.86 15.34 5.54 0.08 -15.78 16 16 N -0.56 -14.55 5.29 -10.96 -0.06 -14.60 16 17 C -0.30 -8.40 9.68 -14.93 -0.14 -8.55 16 18 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 19 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 20 N -0.90 -24.79 13.05 55.50 0.72 -24.07 16 21 Si 0.93 21.22 29.55 -169.99 -5.02 16.20 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 25 C 0.02 0.31 6.29 -7.54 -0.05 0.26 16 26 C -0.16 -0.97 9.96 -26.69 -0.27 -1.23 16 27 C -0.15 -1.09 8.32 -26.69 -0.22 -1.31 16 28 H 0.02 0.16 8.10 -51.93 -0.42 -0.26 16 29 H 0.07 0.57 8.13 -51.93 -0.42 0.15 16 30 H 0.07 0.68 6.28 -51.93 -0.33 0.35 16 31 H 0.07 0.63 8.07 -51.93 -0.42 0.21 16 32 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 33 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 34 H 0.05 0.31 7.93 -51.93 -0.41 -0.10 16 35 H 0.08 0.58 7.89 -51.93 -0.41 0.17 16 36 H 0.40 3.22 8.48 -40.82 -0.35 2.88 16 37 H 0.07 0.88 7.82 -51.93 -0.41 0.47 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.11 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.07 0.78 7.73 -51.93 -0.40 0.38 16 41 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.06 0.91 7.56 -51.93 -0.39 0.52 16 43 H 0.09 1.51 8.14 -51.92 -0.42 1.09 16 44 H 0.39 9.65 7.90 -40.82 -0.32 9.33 16 45 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 46 H 0.09 1.50 8.13 -51.93 -0.42 1.07 16 47 H 0.07 1.05 7.45 -51.93 -0.39 0.66 16 48 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 49 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.10 0.60 7.98 -51.93 -0.41 0.18 16 51 H 0.10 0.92 8.00 -51.93 -0.42 0.50 16 LS Contribution 417.57 15.07 6.29 6.29 Total: -1.00 -34.56 417.57 -10.27 -44.83 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: -8.81 Total: 11.06 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: -0.58 Total: 7.20 kcal Atomic # 7 Polarization: -59.13 SS G_CDS: -2.33 Total: -61.46 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: 0.18 Total: -24.12 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -34.56 -10.27 -44.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268867230.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.866 kcal (2) G-P(sol) polarization free energy of solvation -34.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds