Wall clock time and date at job start Tue Mar 31 2020 20:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46901 * 110.99993 * 2 1 4 4 C 1.46901 * 111.00043 * 123.95701 * 2 1 3 5 5 C 1.53001 * 109.47226 * 75.66961 * 4 2 1 6 6 C 1.50704 * 115.55051 * 55.73527 * 5 4 2 7 7 O 1.21278 * 119.99866 * 245.74788 * 6 5 4 8 8 N 1.34775 * 120.00047 * 65.74194 * 6 5 4 9 9 C 1.46502 * 120.00049 * 174.86336 * 8 6 5 10 10 C 1.52994 * 109.47058 * 179.97438 * 9 8 6 11 11 C 1.53513 * 114.16911 * 174.99821 * 10 9 8 12 12 N 1.47481 * 87.93096 * 139.86787 * 11 10 9 13 13 C 1.46901 * 110.99765 * 221.30092 * 12 11 10 14 14 C 1.50697 * 109.47493 * 169.99957 * 13 12 11 15 15 O 1.21298 * 119.99889 * 359.97438 * 14 13 12 16 16 N 1.34772 * 120.00315 * 180.02562 * 14 13 12 17 17 C 1.37100 * 119.99742 * 180.02562 * 16 14 13 18 18 H 1.07994 * 120.00489 * 359.97438 * 17 16 14 19 19 C 1.38952 * 119.99802 * 179.97438 * 17 16 14 20 20 N 1.31414 * 119.99888 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00128 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47178 * 89.99895 * 21 19 17 23 23 H 1.48501 * 109.46908 * 209.99805 * 21 19 17 24 24 H 1.48500 * 109.47029 * 329.99368 * 21 19 17 25 25 C 1.47481 * 87.83559 * 332.98754 * 12 11 10 26 26 C 1.52998 * 117.50003 * 201.40458 * 5 4 2 27 27 C 1.53002 * 117.49917 * 270.06749 * 5 4 2 28 28 H 1.08994 * 109.46871 * 296.83412 * 1 2 3 29 29 H 1.09000 * 109.47002 * 56.83695 * 1 2 3 30 30 H 1.08996 * 109.47022 * 176.83478 * 1 2 3 31 31 H 1.09001 * 109.47072 * 183.95010 * 3 2 1 32 32 H 1.08992 * 109.47309 * 303.95837 * 3 2 1 33 33 H 1.08998 * 109.46955 * 63.95884 * 3 2 1 34 34 H 1.08995 * 109.47153 * 315.67137 * 4 2 1 35 35 H 1.09002 * 109.46941 * 195.66959 * 4 2 1 36 36 H 0.96998 * 119.99928 * 354.86838 * 8 6 5 37 37 H 1.09006 * 109.47071 * 59.99978 * 9 8 6 38 38 H 1.09003 * 109.46813 * 300.00581 * 9 8 6 39 39 H 1.09000 * 113.25663 * 42.05376 * 10 9 8 40 40 H 1.09000 * 113.47828 * 25.09623 * 11 10 9 41 41 H 1.08999 * 113.47798 * 254.62820 * 11 10 9 42 42 H 1.09003 * 109.47334 * 49.99088 * 13 12 11 43 43 H 1.09009 * 109.47345 * 289.99902 * 13 12 11 44 44 H 0.96998 * 119.99947 * 359.97438 * 16 14 13 45 45 H 0.97006 * 119.99978 * 180.02562 * 20 19 17 46 46 H 1.08999 * 113.47381 * 141.77466 * 25 12 11 47 47 H 1.08997 * 113.48184 * 272.24989 * 25 12 11 48 48 H 1.08993 * 117.49751 * 215.00430 * 26 5 4 49 49 H 1.08997 * 117.49940 * 0.02562 * 26 5 4 50 50 H 1.09005 * 117.49533 * 359.97324 * 27 5 4 51 51 H 1.08991 * 117.49962 * 144.97358 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.8449 -2.2627 0.8580 6 6 2.4798 -2.7527 -0.4180 7 8 1.7852 -3.1804 -1.3155 8 7 3.8193 -2.7154 -0.5618 9 6 4.4445 -3.2942 -1.7536 10 6 5.9622 -3.1201 -1.6689 11 6 6.7370 -3.7969 -2.8083 12 7 7.6175 -2.6142 -2.8403 13 6 7.9266 -2.2253 -4.2228 14 6 8.6161 -0.8854 -4.2256 15 8 8.8287 -0.3105 -3.1789 16 7 8.9957 -0.3252 -5.3911 17 6 9.6234 0.8936 -5.3935 18 1 9.8135 1.4051 -4.4615 19 6 10.0152 1.4709 -6.5952 20 7 9.7845 0.8484 -7.7293 21 14 10.8699 3.1319 -6.5986 22 1 12.3383 2.9332 -6.5015 23 1 10.5499 3.8506 -7.8581 24 1 10.4009 3.9323 -5.4391 25 6 6.4877 -1.8282 -2.3104 26 6 1.8517 -3.2100 2.0594 27 6 0.5472 -2.9381 1.3059 28 1 -0.3633 0.4639 0.9170 29 1 -0.3633 0.5622 -0.8603 30 1 -0.3633 -1.0261 -0.0567 31 1 3.0828 1.3432 -0.0708 32 1 1.5898 1.9163 -0.8523 33 1 1.7045 1.8723 0.9233 34 1 1.4394 -0.5070 2.0385 35 1 3.0495 -0.5272 1.2798 36 1 4.3695 -2.3055 0.1239 37 1 4.0700 -2.7872 -2.6429 38 1 4.2028 -4.3555 -1.8116 39 1 6.3636 -3.3205 -0.6756 40 1 6.1490 -3.9253 -3.7170 41 1 7.2478 -4.7102 -2.5034 42 1 7.0025 -2.1597 -4.7971 43 1 8.5814 -2.9718 -4.6725 44 1 8.8253 -0.7847 -6.2282 45 1 10.0583 1.2512 -8.5682 46 1 6.7871 -1.0732 -1.5835 47 1 5.8331 -1.4312 -3.0862 48 1 2.3153 -4.1875 1.9269 49 1 1.9629 -2.7670 3.0490 50 1 -0.1992 -2.3161 1.8003 51 1 0.1524 -3.7364 0.6777 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268867230.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:54 Heat of formation + Delta-G solvation = -27.483377 kcal Electronic energy + Delta-G solvation = -29456.351175 eV Core-core repulsion = 25391.801377 eV Total energy + Delta-G solvation = -4064.549798 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.62016 -41.00628 -39.61540 -38.61813 -36.67042 -36.02463 -35.68924 -33.33700 -32.15909 -29.30457 -28.51357 -28.47858 -26.91356 -26.74739 -24.76101 -23.44854 -23.30974 -22.83727 -21.20911 -20.99999 -20.05325 -19.86372 -17.99512 -17.83851 -17.31614 -16.77171 -16.61362 -16.58279 -16.39958 -16.15883 -16.09835 -15.82036 -15.44763 -15.36726 -15.14530 -14.79187 -14.56253 -14.16684 -13.68318 -13.53344 -13.46665 -13.41111 -13.29119 -13.06983 -12.92540 -12.88477 -12.82660 -12.63031 -12.45091 -12.40476 -12.32639 -12.13689 -11.84853 -11.55603 -11.46548 -11.40251 -11.03646 -10.72687 -10.35343 -10.04539 -10.03433 -9.77277 -9.29614 -8.48281 -5.97294 1.36605 1.40059 1.53071 1.69374 2.02681 2.18111 2.27811 2.62346 2.86367 3.09840 3.17827 3.25678 3.44754 3.71016 3.73983 3.81730 3.84937 4.08258 4.17188 4.21166 4.26890 4.29781 4.37961 4.39206 4.48731 4.51093 4.52607 4.53707 4.64575 4.69645 4.73029 4.74532 4.75319 4.82431 4.88366 4.94687 4.98132 5.00512 5.03443 5.20967 5.23432 5.35161 5.39569 5.53351 5.89456 6.06108 6.07199 6.07300 6.58004 6.62710 7.10603 7.33968 7.53587 8.09176 8.69256 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.013766 B = 0.002206 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.561701 B =12687.705523 C =14012.954377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.569 5.569 3 C 0.027 3.973 4 C 0.099 3.901 5 C -0.164 4.164 6 C 0.562 3.438 7 O -0.585 6.585 8 N -0.714 5.714 9 C 0.140 3.860 10 C -0.102 4.102 11 C 0.010 3.990 12 N -0.471 5.471 13 C 0.021 3.979 14 C 0.441 3.559 15 O -0.618 6.618 16 N -0.575 5.575 17 C -0.333 4.333 18 H 0.078 0.922 19 C -0.014 4.014 20 N -0.921 5.921 21 Si 0.994 3.006 22 H -0.270 1.270 23 H -0.270 1.270 24 H -0.273 1.273 25 C 0.013 3.987 26 C -0.132 4.132 27 C -0.151 4.151 28 H 0.039 0.961 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.039 0.961 34 H 0.066 0.934 35 H 0.087 0.913 36 H 0.412 0.588 37 H 0.049 0.951 38 H 0.077 0.923 39 H 0.124 0.876 40 H 0.082 0.918 41 H 0.108 0.892 42 H 0.074 0.926 43 H 0.110 0.890 44 H 0.396 0.604 45 H 0.278 0.722 46 H 0.066 0.934 47 H 0.056 0.944 48 H 0.101 0.899 49 H 0.129 0.871 50 H 0.116 0.884 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.177 -8.750 18.975 27.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.293 5.293 3 C -0.121 4.121 4 C -0.029 4.029 5 C -0.168 4.168 6 C 0.350 3.650 7 O -0.465 6.465 8 N -0.365 5.365 9 C 0.016 3.984 10 C -0.121 4.121 11 C -0.119 4.119 12 N -0.194 5.194 13 C -0.111 4.111 14 C 0.228 3.772 15 O -0.504 6.504 16 N -0.212 5.212 17 C -0.462 4.462 18 H 0.096 0.904 19 C -0.214 4.214 20 N -0.562 5.562 21 Si 0.817 3.183 22 H -0.195 1.195 23 H -0.195 1.195 24 H -0.197 1.197 25 C -0.116 4.116 26 C -0.170 4.170 27 C -0.188 4.188 28 H 0.058 0.942 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.058 0.942 34 H 0.084 0.916 35 H 0.106 0.894 36 H 0.248 0.752 37 H 0.067 0.933 38 H 0.096 0.904 39 H 0.142 0.858 40 H 0.100 0.900 41 H 0.126 0.874 42 H 0.092 0.908 43 H 0.128 0.872 44 H 0.229 0.771 45 H 0.087 0.913 46 H 0.084 0.916 47 H 0.074 0.926 48 H 0.120 0.880 49 H 0.147 0.853 50 H 0.134 0.866 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -17.626 -8.842 18.683 27.164 hybrid contribution -0.244 1.429 -0.696 1.608 sum -17.870 -7.413 17.987 26.417 Atomic orbital electron populations 1.22402 0.86644 1.02296 1.00713 1.61792 1.09011 1.14550 1.43968 1.22370 1.00649 0.88105 1.01003 1.21613 1.01327 0.88312 0.91682 1.21393 1.05073 0.95667 0.94634 1.19712 0.81798 0.75991 0.87525 1.90653 1.63304 1.49029 1.43487 1.45810 1.06719 1.60392 1.23578 1.21195 0.90676 0.98793 0.87765 1.22862 0.93010 0.95449 1.00761 1.23934 0.93783 0.95863 0.98294 1.68823 1.29261 1.05314 1.15955 1.22389 1.00929 0.94802 0.92991 1.20725 0.83967 0.88841 0.83667 1.90481 1.61104 1.66116 1.32674 1.41958 1.52621 1.19023 1.07645 1.19649 1.35555 0.96726 0.94308 0.90362 1.26067 0.98107 1.03234 0.93978 1.69678 1.47612 1.40665 0.98239 0.84920 0.78415 0.77049 0.77912 1.19538 1.19493 1.19729 1.23745 0.91518 0.97225 0.99105 1.23212 0.99452 0.99150 0.95177 1.23055 0.90965 1.02491 1.02289 0.94245 0.92088 0.91543 0.91602 0.91750 0.94249 0.91613 0.89425 0.75224 0.93255 0.90438 0.85792 0.89970 0.87363 0.90775 0.87166 0.77059 0.91279 0.91574 0.92579 0.88024 0.85254 0.86607 0.89631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 9.33 127.69 1.19 1.64 16 2 N -0.57 -10.55 4.66 -948.86 -4.42 -14.97 16 3 C 0.03 0.44 9.51 127.69 1.21 1.65 16 4 C 0.10 1.36 4.89 86.30 0.42 1.79 16 5 C -0.16 -2.55 1.82 -52.93 -0.10 -2.64 16 6 C 0.56 12.86 6.79 87.66 0.60 13.45 16 7 O -0.58 -18.69 16.71 -3.02 -0.05 -18.74 16 8 N -0.71 -13.60 5.55 -463.06 -2.57 -16.17 16 9 C 0.14 2.86 5.60 86.38 0.48 3.34 16 10 C -0.10 -2.06 4.08 -10.45 -0.04 -2.10 16 11 C 0.01 0.22 7.29 83.58 0.61 0.83 16 12 N -0.47 -15.11 6.06 -932.45 -5.65 -20.77 16 13 C 0.02 0.73 5.31 85.56 0.45 1.19 16 14 C 0.44 21.56 7.62 87.66 0.67 22.23 16 15 O -0.62 -34.86 15.34 -3.09 -0.05 -34.91 16 16 N -0.57 -30.27 5.29 -306.99 -1.62 -31.89 16 17 C -0.33 -19.24 9.68 84.04 0.81 -18.43 16 18 H 0.08 4.82 7.16 -2.91 -0.02 4.79 16 19 C -0.01 -0.77 5.50 84.93 0.47 -0.31 16 20 N -0.92 -50.47 13.05 21.66 0.28 -50.18 16 21 Si 0.99 43.45 29.55 68.60 2.03 45.48 16 22 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 23 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 24 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 25 C 0.01 0.40 6.29 83.58 0.53 0.92 16 26 C -0.13 -1.29 9.96 30.62 0.30 -0.98 16 27 C -0.15 -2.04 8.32 30.62 0.25 -1.78 16 28 H 0.04 0.50 8.10 -2.39 -0.02 0.48 16 29 H 0.06 1.04 8.13 -2.39 -0.02 1.02 16 30 H 0.07 1.19 6.28 -2.39 -0.02 1.17 16 31 H 0.07 1.14 8.07 -2.39 -0.02 1.12 16 32 H 0.06 1.11 8.13 -2.39 -0.02 1.09 16 33 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.07 0.67 7.93 -2.39 -0.02 0.65 16 35 H 0.09 1.08 7.89 -2.39 -0.02 1.06 16 36 H 0.41 6.00 8.48 -92.71 -0.79 5.21 16 37 H 0.05 1.24 7.82 -2.38 -0.02 1.22 16 38 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.12 2.14 8.14 -2.39 -0.02 2.13 16 40 H 0.08 1.61 7.73 -2.39 -0.02 1.60 16 41 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.07 2.35 7.56 -2.39 -0.02 2.34 16 43 H 0.11 3.49 8.14 -2.38 -0.02 3.47 16 44 H 0.40 19.80 7.90 -92.71 -0.73 19.07 16 45 H 0.28 14.22 8.31 -92.70 -0.77 13.45 16 46 H 0.07 2.27 8.13 -2.39 -0.02 2.25 16 47 H 0.06 1.79 7.45 -2.39 -0.02 1.77 16 48 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 49 H 0.13 0.63 8.14 -2.39 -0.02 0.61 16 50 H 0.12 1.16 7.98 -2.38 -0.02 1.14 16 51 H 0.09 1.50 8.00 -2.39 -0.02 1.48 16 Total: -1.00 -76.99 417.57 -4.78 -81.77 By element: Atomic # 1 Polarization: 40.17 SS G_CDS: -0.59 Total: 39.59 kcal Atomic # 6 Polarization: 12.93 SS G_CDS: 7.87 Total: 20.80 kcal Atomic # 7 Polarization: -120.00 SS G_CDS: -13.99 Total: -133.98 kcal Atomic # 8 Polarization: -53.55 SS G_CDS: -0.10 Total: -53.65 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -76.99 -4.78 -81.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268867230.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.284 kcal (2) G-P(sol) polarization free energy of solvation -76.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds