Wall clock time and date at job start Tue Mar 31 2020 21:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34778 * 119.99567 * 2 1 4 4 O 1.21585 * 119.99917 * 0.02562 * 3 2 1 5 5 N 1.34774 * 120.00000 * 180.02562 * 3 2 1 6 6 C 1.46495 * 120.00223 * 180.02562 * 5 3 2 7 7 C 1.53008 * 109.47182 * 180.02562 * 6 5 3 8 8 C 1.50698 * 109.46818 * 180.02562 * 7 6 5 9 9 O 1.21284 * 120.00406 * 359.97438 * 8 7 6 10 10 N 1.34781 * 119.99567 * 179.97438 * 8 7 6 11 11 C 1.47482 * 125.66060 * 359.69027 * 10 8 7 12 12 C 1.55287 * 104.77414 * 155.89293 * 11 10 8 13 13 C 1.54499 * 101.41360 * 36.68157 * 12 11 10 14 14 C 1.47189 * 125.66005 * 179.97438 * 10 8 7 15 15 C 1.52247 * 110.24329 * 83.57607 * 13 12 11 16 16 C 1.53163 * 109.66195 * 62.95742 * 15 13 12 17 17 C 1.53191 * 109.27389 * 60.18032 * 16 15 13 18 18 N 1.46934 * 108.91377 * 304.75593 * 17 16 15 19 19 C 1.36937 * 120.70255 * 234.17850 * 18 17 16 20 20 H 1.08006 * 120.00226 * 27.23161 * 19 18 17 21 21 C 1.38815 * 120.00109 * 207.23494 * 19 18 17 22 22 N 1.31618 * 119.99669 * 17.21244 * 21 19 18 23 23 Si 1.86799 * 119.99940 * 197.20668 * 21 19 18 24 24 H 1.48494 * 109.47329 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.46701 * 120.00223 * 23 21 19 26 26 H 1.48503 * 109.46988 * 239.99937 * 23 21 19 27 27 C 1.47083 * 118.59830 * 54.17437 * 18 17 16 28 28 H 1.08998 * 109.47214 * 299.99581 * 1 2 3 29 29 H 1.09002 * 109.47375 * 60.00199 * 1 2 3 30 30 H 1.09004 * 109.46994 * 180.02562 * 1 2 3 31 31 H 0.96992 * 120.00386 * 180.02562 * 2 1 3 32 32 H 0.97005 * 119.99559 * 0.02562 * 5 3 2 33 33 H 1.08997 * 109.47484 * 59.99741 * 6 5 3 34 34 H 1.08999 * 109.47224 * 299.99710 * 6 5 3 35 35 H 1.08997 * 109.47282 * 59.99422 * 7 6 5 36 36 H 1.09007 * 109.46538 * 299.99576 * 7 6 5 37 37 H 1.09000 * 110.35006 * 274.84691 * 11 10 8 38 38 H 1.08996 * 110.35661 * 37.13721 * 11 10 8 39 39 H 1.09000 * 111.22695 * 278.58690 * 12 11 10 40 40 H 1.09000 * 110.89770 * 154.63767 * 12 11 10 41 41 H 1.09003 * 109.90799 * 300.87025 * 14 10 8 42 42 H 1.08999 * 109.90936 * 61.94873 * 14 10 8 43 43 H 1.09009 * 109.43612 * 183.01285 * 15 13 12 44 44 H 1.08997 * 109.43616 * 302.93117 * 15 13 12 45 45 H 1.09001 * 109.50144 * 180.11920 * 16 15 13 46 46 H 1.08994 * 109.50230 * 300.19463 * 16 15 13 47 47 H 1.08997 * 109.56771 * 64.58690 * 17 16 15 48 48 H 1.09006 * 109.56219 * 184.81855 * 17 16 15 49 49 H 0.97004 * 119.99778 * 180.02562 * 22 21 19 50 50 H 1.09001 * 109.57125 * 187.75041 * 27 18 17 51 51 H 1.09000 * 109.57297 * 67.37100 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5308 2.2202 0.0005 5 7 3.4866 1.1674 -0.0005 6 6 4.2190 2.4361 0.0000 7 6 5.7233 2.1566 -0.0014 8 6 6.4767 3.4617 -0.0002 9 8 5.8702 4.5120 0.0012 10 7 7.8245 3.4617 -0.0006 11 6 8.6843 2.2635 0.0043 12 6 10.0285 2.7382 -0.6114 13 6 10.1386 4.1690 -0.0391 14 6 8.6825 4.6577 0.0000 15 6 10.7331 4.1316 1.3620 16 6 12.1584 3.5740 1.3024 17 6 13.0175 4.4763 0.4111 18 7 12.3748 4.5970 -0.9047 19 6 13.0649 4.3004 -2.0497 20 1 13.8782 3.5903 -2.0215 21 6 12.7191 4.9124 -3.2467 22 7 11.9814 6.0024 -3.2395 23 14 13.3010 4.1891 -4.8677 24 1 14.1091 2.9713 -4.6048 25 1 12.1247 3.8317 -5.7008 26 1 14.1310 5.1890 -5.5864 27 6 10.9746 5.0430 -0.9661 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.9500 -0.8399 -0.0004 32 1 3.9716 0.3273 -0.0013 33 1 3.9560 3.0071 0.8904 34 1 3.9553 3.0082 -0.8895 35 1 5.9860 1.5857 -0.8920 36 1 5.9873 1.5842 0.8880 37 1 8.8355 1.9096 1.0241 38 1 8.2433 1.4779 -0.6091 39 1 9.9796 2.7553 -1.7002 40 1 10.8547 2.1153 -0.2686 41 1 8.4714 5.2664 -0.8793 42 1 8.5076 5.2396 0.9049 43 1 10.7553 5.1407 1.7737 44 1 10.1207 3.4934 1.9989 45 1 12.5806 3.5464 2.3070 46 1 12.1377 2.5659 0.8886 47 1 13.1049 5.4627 0.8664 48 1 14.0090 4.0382 0.2960 49 1 11.7394 6.4298 -4.0759 50 1 10.6059 4.9491 -1.9875 51 1 10.9083 6.0829 -0.6460 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269687692.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:23 Heat of formation + Delta-G solvation = -43.186777 kcal Electronic energy + Delta-G solvation = -30093.298623 eV Core-core repulsion = 26028.067874 eV Total energy + Delta-G solvation = -4065.230748 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.40806 -40.04362 -38.54517 -35.90353 -35.47947 -34.74419 -33.11900 -31.76572 -30.75011 -29.98568 -29.29900 -27.13150 -25.67102 -25.35484 -23.51568 -22.80921 -22.04014 -21.25556 -20.67205 -19.40826 -18.71082 -17.96565 -17.21104 -16.75473 -16.37619 -16.23753 -15.77834 -15.31226 -14.89286 -14.79421 -14.54944 -14.26009 -14.05422 -13.88299 -13.53322 -13.34946 -13.15531 -13.06345 -12.62160 -12.59527 -12.54742 -12.36765 -12.11294 -12.02749 -11.81297 -11.60405 -11.21633 -11.04313 -10.77927 -10.65002 -10.52007 -10.44651 -10.20650 -10.08694 -9.88915 -9.80159 -9.60528 -9.56885 -9.45510 -9.13231 -8.51782 -8.47069 -6.71523 -5.83048 -3.24541 2.35187 2.68656 2.96798 3.13475 3.33419 3.41937 3.43470 3.95903 4.44545 4.49102 4.59207 4.80722 4.83274 4.89993 5.00283 5.17066 5.19321 5.22428 5.38292 5.39978 5.44612 5.47322 5.56913 5.62520 5.69408 5.76845 5.80263 5.96551 6.00727 6.09051 6.11947 6.17635 6.18780 6.30978 6.34329 6.39224 6.44774 6.56563 6.63943 6.71087 6.76893 6.84981 6.97104 7.27386 7.57623 7.64622 7.69938 7.75905 8.22827 8.33608 8.39525 9.16392 9.80186 10.37243 11.25512 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.016653 B = 0.002264 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.019076 B =12364.622834 C =13143.758214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.753 5.753 3 C 0.701 3.299 4 O -0.585 6.585 5 N -0.747 5.747 6 C 0.153 3.847 7 C -0.148 4.148 8 C 0.529 3.471 9 O -0.541 6.541 10 N -0.612 5.612 11 C 0.095 3.905 12 C -0.108 4.108 13 C -0.092 4.092 14 C 0.120 3.880 15 C -0.094 4.094 16 C -0.135 4.135 17 C 0.143 3.857 18 N -0.588 5.588 19 C -0.250 4.250 20 H 0.066 0.934 21 C 0.003 3.997 22 N -0.901 5.901 23 Si 0.899 3.101 24 H -0.278 1.278 25 H -0.289 1.289 26 H -0.291 1.291 27 C 0.189 3.811 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.397 0.603 32 H 0.395 0.605 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.056 0.944 44 H 0.046 0.954 45 H 0.049 0.951 46 H 0.060 0.940 47 H 0.017 0.983 48 H 0.052 0.948 49 H 0.254 0.746 50 H 0.090 0.910 51 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.568 -16.132 9.119 22.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.409 5.409 3 C 0.401 3.599 4 O -0.462 6.462 5 N -0.403 5.403 6 C 0.029 3.971 7 C -0.188 4.188 8 C 0.316 3.684 9 O -0.419 6.419 10 N -0.346 5.346 11 C -0.028 4.028 12 C -0.146 4.146 13 C -0.094 4.094 14 C -0.003 4.003 15 C -0.132 4.132 16 C -0.174 4.174 17 C 0.017 3.983 18 N -0.311 5.311 19 C -0.380 4.380 20 H 0.084 0.916 21 C -0.196 4.196 22 N -0.545 5.545 23 Si 0.729 3.271 24 H -0.203 1.203 25 H -0.216 1.216 26 H -0.218 1.218 27 C 0.062 3.938 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.230 0.770 32 H 0.228 0.772 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.104 0.896 41 H 0.091 0.909 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.064 0.936 45 H 0.068 0.932 46 H 0.079 0.921 47 H 0.035 0.965 48 H 0.071 0.929 49 H 0.064 0.936 50 H 0.109 0.891 51 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -14.587 -14.450 8.965 22.404 hybrid contribution 0.805 -1.198 -0.867 1.684 sum -13.782 -15.648 8.098 22.370 Atomic orbital electron populations 1.21391 0.78119 1.01894 1.02382 1.44917 1.07805 1.07083 1.81099 1.15938 0.81715 0.84307 0.77989 1.90967 1.67776 1.30300 1.57200 1.45095 1.04773 1.09825 1.80593 1.20897 0.88017 0.84037 1.04166 1.21766 0.95091 0.97072 1.04900 1.19869 0.80933 0.90735 0.76869 1.90748 1.67238 1.33585 1.50299 1.48623 1.04584 1.09114 1.72264 1.22566 0.92074 0.87629 1.00516 1.22748 0.94479 0.96283 1.01043 1.21813 0.93007 0.97152 0.97424 1.21988 0.89141 0.87135 1.01993 1.21287 0.96200 1.00442 0.95239 1.22087 0.95859 1.00449 0.99008 1.20911 0.94714 0.95749 0.86933 1.44010 1.07634 1.78713 1.00696 1.19183 1.14795 1.18183 0.85811 0.91615 1.25023 1.00435 0.95597 0.98564 1.70029 1.41223 1.17612 1.25668 0.86282 0.78013 0.78624 0.84216 1.20286 1.21604 1.21753 1.20630 0.82838 0.92475 0.97809 0.92366 0.92339 0.90702 0.77040 0.77164 0.90576 0.90506 0.88290 0.88443 0.91650 0.91241 0.90340 0.89594 0.90943 0.91872 0.92494 0.93561 0.93185 0.92097 0.96548 0.92928 0.93608 0.89143 0.96206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.65 10.70 59.85 0.64 1.29 16 2 N -0.75 -5.27 5.72 -72.07 -0.41 -5.68 16 3 C 0.70 7.82 8.57 -86.92 -0.74 7.07 16 4 O -0.59 -9.53 16.34 5.29 0.09 -9.44 16 5 N -0.75 -6.44 5.56 -65.23 -0.36 -6.80 16 6 C 0.15 1.71 4.96 -4.04 -0.02 1.69 16 7 C -0.15 -1.38 4.82 -27.88 -0.13 -1.51 16 8 C 0.53 7.58 7.85 -10.98 -0.09 7.50 16 9 O -0.54 -10.03 16.31 5.55 0.09 -9.94 16 10 N -0.61 -8.73 3.33 -170.52 -0.57 -9.29 16 11 C 0.09 1.11 6.39 -2.29 -0.01 1.09 16 12 C -0.11 -1.63 5.75 -24.73 -0.14 -1.77 16 13 C -0.09 -1.55 0.55 -154.09 -0.09 -1.63 16 14 C 0.12 1.99 6.05 -3.33 -0.02 1.97 16 15 C -0.09 -1.43 4.55 -27.03 -0.12 -1.56 16 16 C -0.13 -2.10 5.90 -26.55 -0.16 -2.25 16 17 C 0.14 2.80 6.49 -3.71 -0.02 2.77 16 18 N -0.59 -13.63 2.85 -172.67 -0.49 -14.12 16 19 C -0.25 -6.46 9.60 -15.06 -0.14 -6.60 16 20 H 0.07 1.68 7.89 -52.48 -0.41 1.27 16 21 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 22 N -0.90 -25.36 11.17 55.49 0.62 -24.74 16 23 Si 0.90 20.98 29.59 -169.99 -5.03 15.95 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 C 0.19 4.17 3.83 -4.04 -0.02 4.15 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.40 1.38 8.84 -40.82 -0.36 1.02 16 32 H 0.39 1.91 8.49 -40.82 -0.35 1.57 16 33 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 34 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 35 H 0.10 0.74 7.86 -51.93 -0.41 0.33 16 36 H 0.10 0.67 8.14 -51.92 -0.42 0.25 16 37 H 0.07 0.67 7.73 -51.93 -0.40 0.26 16 38 H 0.07 0.65 7.48 -51.93 -0.39 0.26 16 39 H 0.08 1.36 7.91 -51.93 -0.41 0.95 16 40 H 0.09 1.28 6.00 -51.93 -0.31 0.97 16 41 H 0.07 1.35 7.80 -51.93 -0.40 0.95 16 42 H 0.06 1.04 7.84 -51.93 -0.41 0.63 16 43 H 0.06 0.90 8.14 -51.92 -0.42 0.48 16 44 H 0.05 0.62 7.46 -51.93 -0.39 0.24 16 45 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.06 0.94 6.23 -51.93 -0.32 0.61 16 47 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.05 1.01 7.94 -51.93 -0.41 0.60 16 49 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 50 H 0.09 2.28 5.92 -51.93 -0.31 1.97 16 51 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 398.13 15.07 6.00 6.00 Total: -1.00 -34.65 398.13 -9.87 -44.51 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -8.64 Total: 1.36 kcal Atomic # 6 Polarization: 13.35 SS G_CDS: -1.16 Total: 12.19 kcal Atomic # 7 Polarization: -59.41 SS G_CDS: -1.22 Total: -60.63 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: 0.18 Total: -19.38 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.03 Total: 15.95 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.65 -9.87 -44.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269687692.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.326 kcal (2) G-P(sol) polarization free energy of solvation -34.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds