Wall clock time and date at job start Tue Mar 31 2020 21:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34778 * 119.99567 * 2 1 4 4 O 1.21585 * 119.99917 * 0.02562 * 3 2 1 5 5 N 1.34774 * 120.00000 * 180.02562 * 3 2 1 6 6 C 1.46495 * 120.00223 * 180.02562 * 5 3 2 7 7 C 1.53008 * 109.47182 * 180.02562 * 6 5 3 8 8 C 1.50698 * 109.46818 * 180.02562 * 7 6 5 9 9 O 1.21284 * 120.00406 * 359.97438 * 8 7 6 10 10 N 1.34781 * 119.99567 * 179.97438 * 8 7 6 11 11 C 1.47482 * 125.66060 * 359.69027 * 10 8 7 12 12 C 1.55287 * 104.77414 * 155.89293 * 11 10 8 13 13 C 1.54499 * 101.41360 * 36.68157 * 12 11 10 14 14 C 1.47189 * 125.66005 * 179.97438 * 10 8 7 15 15 C 1.52247 * 110.24329 * 83.57607 * 13 12 11 16 16 C 1.53163 * 109.66195 * 62.95742 * 15 13 12 17 17 C 1.53191 * 109.27389 * 60.18032 * 16 15 13 18 18 N 1.46934 * 108.91377 * 304.75593 * 17 16 15 19 19 C 1.36937 * 120.70255 * 234.17850 * 18 17 16 20 20 H 1.08006 * 120.00226 * 27.23161 * 19 18 17 21 21 C 1.38815 * 120.00109 * 207.23494 * 19 18 17 22 22 N 1.31618 * 119.99669 * 17.21244 * 21 19 18 23 23 Si 1.86799 * 119.99940 * 197.20668 * 21 19 18 24 24 H 1.48494 * 109.47329 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.46701 * 120.00223 * 23 21 19 26 26 H 1.48503 * 109.46988 * 239.99937 * 23 21 19 27 27 C 1.47083 * 118.59830 * 54.17437 * 18 17 16 28 28 H 1.08998 * 109.47214 * 299.99581 * 1 2 3 29 29 H 1.09002 * 109.47375 * 60.00199 * 1 2 3 30 30 H 1.09004 * 109.46994 * 180.02562 * 1 2 3 31 31 H 0.96992 * 120.00386 * 180.02562 * 2 1 3 32 32 H 0.97005 * 119.99559 * 0.02562 * 5 3 2 33 33 H 1.08997 * 109.47484 * 59.99741 * 6 5 3 34 34 H 1.08999 * 109.47224 * 299.99710 * 6 5 3 35 35 H 1.08997 * 109.47282 * 59.99422 * 7 6 5 36 36 H 1.09007 * 109.46538 * 299.99576 * 7 6 5 37 37 H 1.09000 * 110.35006 * 274.84691 * 11 10 8 38 38 H 1.08996 * 110.35661 * 37.13721 * 11 10 8 39 39 H 1.09000 * 111.22695 * 278.58690 * 12 11 10 40 40 H 1.09000 * 110.89770 * 154.63767 * 12 11 10 41 41 H 1.09003 * 109.90799 * 300.87025 * 14 10 8 42 42 H 1.08999 * 109.90936 * 61.94873 * 14 10 8 43 43 H 1.09009 * 109.43612 * 183.01285 * 15 13 12 44 44 H 1.08997 * 109.43616 * 302.93117 * 15 13 12 45 45 H 1.09001 * 109.50144 * 180.11920 * 16 15 13 46 46 H 1.08994 * 109.50230 * 300.19463 * 16 15 13 47 47 H 1.08997 * 109.56771 * 64.58690 * 17 16 15 48 48 H 1.09006 * 109.56219 * 184.81855 * 17 16 15 49 49 H 0.97004 * 119.99778 * 180.02562 * 22 21 19 50 50 H 1.09001 * 109.57125 * 187.75041 * 27 18 17 51 51 H 1.09000 * 109.57297 * 67.37100 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5308 2.2202 0.0005 5 7 3.4866 1.1674 -0.0005 6 6 4.2190 2.4361 0.0000 7 6 5.7233 2.1566 -0.0014 8 6 6.4767 3.4617 -0.0002 9 8 5.8702 4.5120 0.0012 10 7 7.8245 3.4617 -0.0006 11 6 8.6843 2.2635 0.0043 12 6 10.0285 2.7382 -0.6114 13 6 10.1386 4.1690 -0.0391 14 6 8.6825 4.6577 0.0000 15 6 10.7331 4.1316 1.3620 16 6 12.1584 3.5740 1.3024 17 6 13.0175 4.4763 0.4111 18 7 12.3748 4.5970 -0.9047 19 6 13.0649 4.3004 -2.0497 20 1 13.8782 3.5903 -2.0215 21 6 12.7191 4.9124 -3.2467 22 7 11.9814 6.0024 -3.2395 23 14 13.3010 4.1891 -4.8677 24 1 14.1091 2.9713 -4.6048 25 1 12.1247 3.8317 -5.7008 26 1 14.1310 5.1890 -5.5864 27 6 10.9746 5.0430 -0.9661 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.9500 -0.8399 -0.0004 32 1 3.9716 0.3273 -0.0013 33 1 3.9560 3.0071 0.8904 34 1 3.9553 3.0082 -0.8895 35 1 5.9860 1.5857 -0.8920 36 1 5.9873 1.5842 0.8880 37 1 8.8355 1.9096 1.0241 38 1 8.2433 1.4779 -0.6091 39 1 9.9796 2.7553 -1.7002 40 1 10.8547 2.1153 -0.2686 41 1 8.4714 5.2664 -0.8793 42 1 8.5076 5.2396 0.9049 43 1 10.7553 5.1407 1.7737 44 1 10.1207 3.4934 1.9989 45 1 12.5806 3.5464 2.3070 46 1 12.1377 2.5659 0.8886 47 1 13.1049 5.4627 0.8664 48 1 14.0090 4.0382 0.2960 49 1 11.7394 6.4298 -4.0759 50 1 10.6059 4.9491 -1.9875 51 1 10.9083 6.0829 -0.6460 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269687692.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:21 Heat of formation + Delta-G solvation = -69.813221 kcal Electronic energy + Delta-G solvation = -30094.453232 eV Core-core repulsion = 26028.067874 eV Total energy + Delta-G solvation = -4066.385357 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -41.56168 -40.97488 -39.84769 -37.32597 -36.35432 -35.57048 -34.81766 -33.08483 -31.89158 -31.58278 -30.49279 -27.96508 -27.22376 -26.78080 -24.62293 -24.02099 -23.48330 -22.15664 -22.06767 -20.41280 -19.76586 -19.28740 -18.55001 -18.13043 -17.39406 -17.14819 -16.78390 -16.71624 -16.33406 -15.79434 -15.75728 -15.40232 -15.28204 -15.04134 -14.85814 -14.67325 -14.60586 -14.18036 -13.96673 -13.74940 -13.65438 -13.36046 -13.26787 -13.01926 -12.94350 -12.87436 -12.72527 -12.49528 -12.47903 -12.12934 -12.10749 -11.83835 -11.59367 -11.52445 -11.34588 -11.16707 -11.00610 -10.90689 -10.52402 -10.45923 -9.81366 -9.65103 -8.64876 -7.85022 -5.28845 1.45406 1.48230 1.56345 1.57949 1.60246 2.11324 2.12005 2.52375 3.27149 3.30895 3.48671 3.65297 3.74808 3.82348 3.90209 4.04514 4.07014 4.29988 4.31738 4.42414 4.47458 4.49400 4.53874 4.65588 4.66939 4.69024 4.77389 4.81717 4.84037 4.89714 4.97102 4.99673 5.02341 5.15358 5.18500 5.23857 5.33621 5.34308 5.39313 5.44690 5.49040 5.51619 5.62774 5.72503 5.77875 6.00671 6.40364 6.56247 7.11167 7.12734 7.16667 7.57522 7.89348 8.41411 9.21181 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.016653 B = 0.002264 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.019076 B =12364.622834 C =13143.758214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.735 5.735 3 C 0.691 3.309 4 O -0.645 6.645 5 N -0.727 5.727 6 C 0.160 3.840 7 C -0.127 4.127 8 C 0.521 3.479 9 O -0.595 6.595 10 N -0.612 5.612 11 C 0.103 3.897 12 C -0.106 4.106 13 C -0.083 4.083 14 C 0.125 3.875 15 C -0.089 4.089 16 C -0.121 4.121 17 C 0.135 3.865 18 N -0.603 5.603 19 C -0.248 4.248 20 H 0.072 0.928 21 C -0.054 4.054 22 N -0.939 5.939 23 Si 0.960 3.040 24 H -0.260 1.260 25 H -0.294 1.294 26 H -0.299 1.299 27 C 0.201 3.799 28 H 0.044 0.956 29 H 0.042 0.958 30 H 0.116 0.884 31 H 0.418 0.582 32 H 0.418 0.582 33 H 0.050 0.950 34 H 0.043 0.957 35 H 0.131 0.869 36 H 0.140 0.860 37 H 0.101 0.899 38 H 0.106 0.894 39 H 0.047 0.953 40 H 0.097 0.903 41 H 0.034 0.966 42 H 0.061 0.939 43 H 0.046 0.954 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.072 0.928 47 H 0.004 0.996 48 H 0.054 0.946 49 H 0.246 0.754 50 H 0.051 0.949 51 H -0.020 1.020 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.379 -21.199 10.950 27.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.391 5.391 3 C 0.391 3.609 4 O -0.527 6.527 5 N -0.384 5.384 6 C 0.035 3.965 7 C -0.167 4.167 8 C 0.311 3.689 9 O -0.476 6.476 10 N -0.345 5.345 11 C -0.018 4.018 12 C -0.143 4.143 13 C -0.085 4.085 14 C 0.001 3.999 15 C -0.126 4.126 16 C -0.160 4.160 17 C 0.010 3.990 18 N -0.326 5.326 19 C -0.378 4.378 20 H 0.089 0.911 21 C -0.249 4.249 22 N -0.586 5.586 23 Si 0.789 3.211 24 H -0.184 1.184 25 H -0.221 1.221 26 H -0.226 1.226 27 C 0.074 3.926 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.135 0.865 31 H 0.254 0.746 32 H 0.256 0.744 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.149 0.851 36 H 0.158 0.842 37 H 0.119 0.881 38 H 0.124 0.876 39 H 0.066 0.934 40 H 0.115 0.885 41 H 0.052 0.948 42 H 0.080 0.920 43 H 0.065 0.935 44 H 0.100 0.900 45 H 0.100 0.900 46 H 0.090 0.910 47 H 0.022 0.978 48 H 0.073 0.927 49 H 0.055 0.945 50 H 0.069 0.931 51 H -0.002 1.002 Dipole moment (debyes) X Y Z Total from point charges -14.347 -19.650 10.830 26.631 hybrid contribution 0.783 0.438 -1.418 1.678 sum -13.564 -19.212 9.412 25.331 Atomic orbital electron populations 1.21538 0.77482 1.04168 1.01020 1.44788 1.08210 1.06691 1.79432 1.16289 0.82335 0.84544 0.77778 1.90932 1.69103 1.32789 1.59858 1.44748 1.03991 1.09998 1.79697 1.20592 0.89802 0.84685 1.01455 1.21705 0.92269 0.94409 1.08321 1.20824 0.80740 0.91976 0.75393 1.90735 1.68243 1.36088 1.52575 1.48692 1.04798 1.09054 1.71938 1.22760 0.89285 0.86874 1.02916 1.22663 0.97410 0.94889 0.99372 1.21544 0.91922 0.97368 0.97661 1.21708 0.89812 0.88222 1.00190 1.21269 0.96616 1.00798 0.93959 1.21954 0.94893 0.99530 0.99584 1.21132 0.95750 0.96287 0.85877 1.44257 1.08123 1.78588 1.01600 1.19527 1.14298 1.17191 0.86774 0.91067 1.25751 1.01399 0.96102 1.01655 1.70210 1.43334 1.19352 1.25665 0.85299 0.77256 0.78154 0.80343 1.18426 1.22114 1.22635 1.20305 0.83627 0.91704 0.96917 0.93699 0.93871 0.86523 0.74558 0.74373 0.93159 0.93820 0.85121 0.84229 0.88112 0.87558 0.93407 0.88489 0.94776 0.92029 0.93544 0.89973 0.89952 0.90951 0.97780 0.92697 0.94501 0.93078 1.00197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.08 10.70 127.77 1.37 2.45 16 2 N -0.73 -8.56 5.72 -500.18 -2.86 -11.42 16 3 C 0.69 14.67 8.57 179.05 1.53 16.20 16 4 O -0.65 -21.60 16.34 -3.98 -0.07 -21.66 16 5 N -0.73 -10.79 5.56 -478.54 -2.66 -13.45 16 6 C 0.16 3.41 4.96 86.38 0.43 3.84 16 7 C -0.13 -1.89 4.82 29.85 0.14 -1.75 16 8 C 0.52 14.21 7.85 87.66 0.69 14.90 16 9 O -0.60 -22.80 16.31 -3.04 -0.05 -22.85 16 10 N -0.61 -16.25 3.33 -811.80 -2.70 -18.95 16 11 C 0.10 1.90 6.39 86.98 0.56 2.46 16 12 C -0.11 -2.95 5.75 31.89 0.18 -2.77 16 13 C -0.08 -2.77 0.55 -51.91 -0.03 -2.80 16 14 C 0.12 4.23 6.05 86.46 0.52 4.75 16 15 C -0.09 -2.48 4.55 30.40 0.14 -2.34 16 16 C -0.12 -3.35 5.90 30.71 0.18 -3.17 16 17 C 0.13 5.15 6.49 86.36 0.56 5.71 16 18 N -0.60 -28.46 2.85 -700.21 -2.00 -30.46 16 19 C -0.25 -12.95 9.60 84.03 0.81 -12.15 16 20 H 0.07 3.60 7.89 -2.91 -0.02 3.57 16 21 C -0.05 -2.97 4.92 84.86 0.42 -2.56 16 22 N -0.94 -55.85 11.17 21.65 0.24 -55.61 16 23 Si 0.96 44.12 29.59 68.60 2.03 46.15 16 24 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 25 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 26 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 27 C 0.20 9.36 3.83 86.06 0.33 9.69 16 28 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.12 0.25 8.14 -2.38 -0.02 0.23 16 31 H 0.42 1.33 8.84 -92.71 -0.82 0.52 16 32 H 0.42 2.19 8.49 -92.70 -0.79 1.40 16 33 H 0.05 1.34 8.10 -2.39 -0.02 1.32 16 34 H 0.04 1.22 8.10 -2.39 -0.02 1.21 16 35 H 0.13 1.23 7.86 -2.39 -0.02 1.21 16 36 H 0.14 1.02 8.14 -2.38 -0.02 1.00 16 37 H 0.10 1.30 7.73 -2.39 -0.02 1.28 16 38 H 0.11 1.29 7.48 -2.39 -0.02 1.27 16 39 H 0.05 1.63 7.91 -2.39 -0.02 1.61 16 40 H 0.10 2.52 6.00 -2.39 -0.01 2.50 16 41 H 0.03 1.39 7.80 -2.39 -0.02 1.37 16 42 H 0.06 2.08 7.84 -2.39 -0.02 2.06 16 43 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 44 H 0.08 1.78 7.46 -2.39 -0.02 1.77 16 45 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 46 H 0.07 1.89 6.23 -2.39 -0.01 1.87 16 47 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 48 H 0.05 2.04 7.94 -2.38 -0.02 2.02 16 49 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 50 H 0.05 2.77 5.92 -2.39 -0.01 2.76 16 51 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 Total: -1.00 -85.44 398.13 -0.90 -86.34 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -0.66 Total: 9.42 kcal Atomic # 6 Polarization: 24.65 SS G_CDS: 7.83 Total: 32.48 kcal Atomic # 7 Polarization: -119.91 SS G_CDS: -9.98 Total: -129.89 kcal Atomic # 8 Polarization: -44.39 SS G_CDS: -0.11 Total: -44.51 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -85.44 -0.90 -86.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269687692.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.529 kcal (2) G-P(sol) polarization free energy of solvation -85.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds