Wall clock time and date at job start Tue Mar 31 2020 21:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86798 * 120.00010 * 2 1 4 4 H 1.48504 * 109.46965 * 269.99557 * 3 2 1 5 5 H 1.48495 * 109.47435 * 29.99888 * 3 2 1 6 6 H 1.48508 * 109.47054 * 149.99899 * 3 2 1 7 7 C 1.38818 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00089 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99618 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99788 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47057 * 180.02562 * 10 9 7 12 12 H 1.09004 * 109.47568 * 64.99632 * 11 10 9 13 13 N 1.46506 * 109.47285 * 305.00065 * 11 10 9 14 14 C 1.34774 * 120.00373 * 154.99868 * 13 11 10 15 15 O 1.21286 * 119.99852 * 0.02562 * 14 13 11 16 16 C 1.50700 * 119.99894 * 180.02562 * 14 13 11 17 17 H 1.08995 * 108.89464 * 298.75897 * 16 14 13 18 18 C 1.54207 * 108.97619 * 180.02562 * 16 14 13 19 19 C 1.50622 * 109.06877 * 161.83526 * 18 16 14 20 20 C 1.53813 * 112.46950 * 90.32380 * 19 18 16 21 21 O 1.43989 * 113.41445 * 317.88740 * 20 19 18 22 22 C 1.40326 * 116.57521 * 317.89433 * 21 20 19 23 23 C 1.46283 * 108.98052 * 57.52614 * 16 14 13 24 24 C 1.52999 * 109.47316 * 185.00340 * 11 10 9 25 25 C 1.52999 * 109.46799 * 299.99596 * 24 11 10 26 26 C 1.53000 * 109.47280 * 179.97438 * 25 24 11 27 27 C 1.53001 * 109.46856 * 59.99982 * 26 25 24 28 28 C 1.53003 * 109.47510 * 300.00231 * 27 26 25 29 29 C 1.52999 * 109.46769 * 59.99776 * 28 27 26 30 30 H 0.96996 * 119.99798 * 0.02562 * 1 2 3 31 31 H 0.97005 * 120.00288 * 0.02562 * 9 7 2 32 32 H 1.08994 * 109.47071 * 60.00373 * 10 9 7 33 33 H 1.09000 * 109.47026 * 299.99976 * 10 9 7 34 34 H 0.97001 * 119.99768 * 335.00645 * 13 11 10 35 35 H 1.09000 * 109.53669 * 281.71219 * 18 16 14 36 36 H 1.09002 * 109.54128 * 41.95548 * 18 16 14 37 37 H 1.09001 * 108.88355 * 211.09342 * 19 18 16 38 38 H 1.09005 * 108.87944 * 329.55337 * 19 18 16 39 39 H 1.09000 * 108.69946 * 196.86733 * 20 19 18 40 40 H 1.08999 * 108.59417 * 78.82806 * 20 19 18 41 41 H 1.08998 * 109.59748 * 335.27435 * 22 21 20 42 42 H 1.09000 * 109.72446 * 214.88429 * 22 21 20 43 43 H 1.08998 * 108.93157 * 302.76330 * 23 16 14 44 44 H 1.09000 * 108.93881 * 61.35484 * 23 16 14 45 45 H 1.08998 * 109.47474 * 59.99606 * 24 11 10 46 46 H 1.08998 * 109.47115 * 300.00229 * 25 24 11 47 47 H 1.09007 * 109.46944 * 60.00246 * 25 24 11 48 48 H 1.09005 * 109.47279 * 300.00630 * 26 25 24 49 49 H 1.08995 * 109.47697 * 180.02562 * 26 25 24 50 50 H 1.09000 * 109.46937 * 179.97438 * 27 26 25 51 51 H 1.09002 * 109.46915 * 60.00705 * 27 26 25 52 52 H 1.08998 * 109.46827 * 299.99742 * 28 27 26 53 53 H 1.08998 * 109.47245 * 179.97438 * 28 27 26 54 54 H 1.09004 * 109.47063 * 180.02562 * 29 28 27 55 55 H 1.08998 * 109.47474 * 60.00363 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0580 -3.6568 0.0016 11 6 1.0638 -4.8197 0.0022 12 1 0.4971 -4.8139 -0.9289 13 7 0.1447 -4.6758 1.1340 14 6 -1.0798 -5.2366 1.0833 15 8 -1.4207 -5.8608 0.1009 16 6 -2.0254 -5.0881 2.2473 17 1 -1.5744 -5.5438 3.1288 18 6 -3.3413 -5.8228 1.9213 19 6 -4.0989 -6.0663 3.2002 20 6 -5.0602 -4.9153 3.5422 21 8 -4.4940 -3.6107 3.3167 22 6 -3.1622 -3.4263 3.7186 23 6 -2.2418 -3.6646 2.5058 24 6 1.8246 -6.1412 0.1280 25 6 2.7844 -6.2915 -1.0539 26 6 3.5457 -7.6126 -0.9279 27 6 2.5518 -8.7758 -0.9268 28 6 1.5920 -8.6256 0.2551 29 6 0.8307 -7.3044 0.1290 30 1 -0.4850 0.8400 -0.0004 31 1 0.3555 -2.3881 0.0016 32 1 2.6853 -3.7142 0.8911 33 1 2.6840 -3.7149 -0.8888 34 1 0.4174 -4.1768 1.9198 35 1 -3.9445 -5.2102 1.2513 36 1 -3.1177 -6.7764 1.4429 37 1 -4.6730 -6.9874 3.1002 38 1 -3.3854 -6.1842 4.0158 39 1 -5.3433 -4.9966 4.5916 40 1 -5.9565 -5.0176 2.9304 41 1 -2.9171 -4.1364 4.5084 42 1 -3.0264 -2.4092 4.0863 43 1 -1.2792 -3.1888 2.6928 44 1 -2.6939 -3.2098 1.6244 45 1 2.3912 -6.1470 1.0592 46 1 2.2178 -6.2856 -1.9851 47 1 3.4928 -5.4630 -1.0544 48 1 4.1123 -7.6181 0.0033 49 1 4.2298 -7.7196 -1.7697 50 1 3.0942 -9.7171 -0.8375 51 1 1.9853 -8.7705 -1.8580 52 1 2.1586 -8.6310 1.1862 53 1 0.8836 -9.4540 0.2556 54 1 0.1472 -7.1970 0.9713 55 1 0.2641 -7.2989 -0.8021 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271335469.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:42 Heat of formation + Delta-G solvation = -124.044593 kcal Electronic energy + Delta-G solvation = -31893.483535 eV Core-core repulsion = 27928.286872 eV Total energy + Delta-G solvation = -3965.196663 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.70360 -40.20231 -39.03083 -37.20718 -35.71387 -35.33680 -33.73176 -32.85435 -32.02330 -31.49938 -28.77108 -28.02632 -26.79996 -25.52251 -23.90010 -23.01727 -22.96032 -21.71160 -21.34795 -20.99783 -20.54487 -19.26092 -18.39613 -17.57231 -17.19265 -16.97996 -16.79558 -16.33524 -16.11125 -15.50950 -15.38204 -15.18096 -15.13949 -14.85535 -14.81867 -14.61573 -14.49042 -14.20429 -13.94010 -13.69907 -13.25088 -13.22144 -13.12104 -12.88007 -12.85801 -12.67390 -12.42945 -12.38463 -12.27885 -12.07816 -11.97249 -11.83160 -11.78985 -11.74371 -11.55946 -11.38805 -11.34043 -11.13537 -10.97896 -10.85125 -10.72279 -10.24757 -9.82324 -8.99852 -7.92973 -5.22726 1.47929 1.49214 1.57519 1.73374 2.29417 2.56289 2.96373 3.40927 3.55460 3.59271 3.70150 3.82585 3.86592 3.95429 3.99924 4.09991 4.12798 4.17365 4.29393 4.33796 4.43806 4.48395 4.50915 4.52734 4.58429 4.61380 4.64336 4.66186 4.68602 4.73396 4.77787 4.79353 4.92093 5.00970 5.02711 5.09621 5.11849 5.16067 5.19603 5.21056 5.29746 5.30755 5.32134 5.35351 5.38734 5.42638 5.47551 5.52264 5.61289 5.70534 6.26781 6.51485 6.65129 7.34438 7.35041 8.07867 8.32124 9.29537 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.006040 B = 0.005278 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4634.465900 B = 5303.661173 C = 9600.997275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.070 4.070 3 Si 0.970 3.030 4 H -0.292 1.292 5 H -0.297 1.297 6 H -0.267 1.267 7 C -0.244 4.244 8 H 0.078 0.922 9 N -0.742 5.742 10 C 0.147 3.853 11 C 0.153 3.847 12 H 0.050 0.950 13 N -0.708 5.708 14 C 0.513 3.487 15 O -0.573 6.573 16 C -0.091 4.091 17 H 0.119 0.881 18 C -0.093 4.093 19 C -0.146 4.146 20 C 0.055 3.945 21 O -0.409 6.409 22 C 0.078 3.922 23 C -0.140 4.140 24 C -0.080 4.080 25 C -0.115 4.115 26 C -0.112 4.112 27 C -0.117 4.117 28 C -0.115 4.115 29 C -0.094 4.094 30 H 0.249 0.751 31 H 0.374 0.626 32 H 0.037 0.963 33 H 0.036 0.964 34 H 0.406 0.594 35 H 0.046 0.954 36 H 0.070 0.930 37 H 0.095 0.905 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.072 0.928 44 H 0.039 0.961 45 H 0.081 0.919 46 H 0.048 0.952 47 H 0.066 0.934 48 H 0.070 0.930 49 H 0.070 0.930 50 H 0.075 0.925 51 H 0.051 0.949 52 H 0.068 0.932 53 H 0.060 0.940 54 H 0.048 0.952 55 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.099 -18.837 9.426 21.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.263 4.263 3 Si 0.799 3.201 4 H -0.219 1.219 5 H -0.224 1.224 6 H -0.191 1.191 7 C -0.375 4.375 8 H 0.095 0.905 9 N -0.385 5.385 10 C 0.021 3.979 11 C 0.048 3.952 12 H 0.068 0.932 13 N -0.358 5.358 14 C 0.300 3.700 15 O -0.453 6.453 16 C -0.112 4.112 17 H 0.137 0.863 18 C -0.131 4.131 19 C -0.184 4.184 20 C -0.021 4.021 21 O -0.329 6.329 22 C 0.000 4.000 23 C -0.178 4.178 24 C -0.100 4.100 25 C -0.153 4.153 26 C -0.149 4.149 27 C -0.155 4.155 28 C -0.152 4.152 29 C -0.132 4.132 30 H 0.058 0.942 31 H 0.206 0.794 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.242 0.758 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.114 0.886 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.105 0.895 41 H 0.099 0.901 42 H 0.105 0.895 43 H 0.091 0.909 44 H 0.058 0.942 45 H 0.099 0.901 46 H 0.067 0.933 47 H 0.085 0.915 48 H 0.088 0.912 49 H 0.088 0.912 50 H 0.094 0.906 51 H 0.070 0.930 52 H 0.086 0.914 53 H 0.079 0.921 54 H 0.067 0.933 55 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -1.267 -19.037 8.652 20.950 hybrid contribution 0.106 1.541 -0.215 1.560 sum -1.161 -17.496 8.437 19.459 Atomic orbital electron populations 1.69829 1.06574 1.25883 1.59274 1.25507 0.96241 1.00882 1.03642 0.85196 0.77870 0.79793 0.77199 1.21944 1.22368 1.19139 1.19597 0.91485 0.85113 1.41354 0.90457 1.42522 1.05595 1.00901 1.89451 1.21123 0.93513 0.84164 0.99140 1.21078 0.90078 0.94862 0.89188 0.93152 1.45955 1.14836 1.54632 1.20343 1.21076 0.82115 0.77573 0.89206 1.90649 1.76576 1.42909 1.35126 1.20432 0.95810 0.98002 0.96998 0.86304 1.21075 0.93763 1.00149 0.98099 1.21909 0.99617 0.99548 0.97304 1.23152 0.96046 0.81426 1.01430 1.87471 1.27918 1.32632 1.84842 1.22276 0.80989 1.02325 0.94360 1.21051 1.01445 0.94839 1.00510 1.21423 0.96159 0.92609 0.99821 1.21605 0.97872 0.98712 0.97135 1.21489 0.97511 0.93372 1.02524 1.21534 0.97254 0.98653 0.98053 1.21539 0.98199 0.96476 0.99012 1.21461 0.96605 0.94214 1.00910 0.94194 0.79443 0.94507 0.94615 0.75836 0.93493 0.91155 0.88633 0.90054 0.91130 0.89451 0.90123 0.89507 0.90930 0.94174 0.90102 0.93289 0.91537 0.91167 0.91150 0.90644 0.93043 0.91363 0.92089 0.93328 0.94068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.84 13.06 21.65 0.28 -58.55 16 2 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 3 Si 0.97 45.71 29.55 68.60 2.03 47.74 16 4 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 5 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.24 -13.28 9.99 84.03 0.84 -12.44 16 8 H 0.08 4.02 7.83 -2.91 -0.02 3.99 16 9 N -0.74 -36.75 5.43 -343.46 -1.87 -38.62 16 10 C 0.15 5.64 5.31 86.38 0.46 6.10 16 11 C 0.15 5.18 2.00 44.99 0.09 5.27 16 12 H 0.05 2.07 7.58 -2.38 -0.02 2.05 16 13 N -0.71 -22.45 4.24 -442.52 -1.88 -24.32 16 14 C 0.51 16.56 5.47 87.66 0.48 17.04 16 15 O -0.57 -22.02 12.72 -3.05 -0.04 -22.06 16 16 C -0.09 -2.31 2.10 -13.20 -0.03 -2.34 16 17 H 0.12 2.26 7.60 -2.39 -0.02 2.24 16 18 C -0.09 -2.25 4.53 30.23 0.14 -2.12 16 19 C -0.15 -2.41 5.32 30.10 0.16 -2.25 16 20 C 0.06 1.00 6.67 72.26 0.48 1.49 16 21 O -0.41 -10.65 10.17 -143.49 -1.46 -12.11 16 22 C 0.08 1.80 6.38 72.36 0.46 2.26 16 23 C -0.14 -3.97 4.61 28.90 0.13 -3.84 16 24 C -0.08 -2.15 1.96 -10.79 -0.02 -2.17 16 25 C -0.12 -2.86 4.85 30.59 0.15 -2.71 16 26 C -0.11 -2.16 5.92 30.59 0.18 -1.98 16 27 C -0.12 -2.23 5.92 30.60 0.18 -2.05 16 28 C -0.11 -2.38 5.92 30.59 0.18 -2.20 16 29 C -0.09 -2.53 3.73 30.59 0.11 -2.42 16 30 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 31 H 0.37 20.25 7.33 -92.70 -0.68 19.57 16 32 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.04 1.39 6.71 -2.39 -0.02 1.37 16 34 H 0.41 12.17 7.69 -92.71 -0.71 11.46 16 35 H 0.05 1.39 7.83 -2.39 -0.02 1.37 16 36 H 0.07 1.81 7.41 -2.39 -0.02 1.79 16 37 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.08 1.08 6.84 -2.38 -0.02 1.07 16 39 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.08 1.36 6.98 -2.39 -0.02 1.34 16 42 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 43 H 0.07 2.14 7.11 -2.39 -0.02 2.12 16 44 H 0.04 1.46 8.13 -2.39 -0.02 1.44 16 45 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 46 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 47 H 0.07 1.68 6.54 -2.38 -0.02 1.66 16 48 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 49 H 0.07 1.22 8.14 -2.39 -0.02 1.21 16 50 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 51 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 52 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 53 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 54 H 0.05 1.39 5.78 -2.38 -0.01 1.38 16 55 H 0.04 1.33 7.53 -2.39 -0.02 1.32 16 Total: -1.00 -68.70 405.72 1.01 -67.68 By element: Atomic # 1 Polarization: 48.60 SS G_CDS: -0.52 Total: 48.08 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: 4.47 Total: -7.84 kcal Atomic # 7 Polarization: -118.03 SS G_CDS: -3.46 Total: -121.49 kcal Atomic # 8 Polarization: -32.67 SS G_CDS: -1.50 Total: -34.17 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -68.70 1.01 -67.68 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271335469.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.361 kcal (2) G-P(sol) polarization free energy of solvation -68.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds