Wall clock time and date at job start Tue Mar 31 2020 21:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 119.99792 * 2 1 4 4 H 1.48498 * 109.47381 * 270.00132 * 3 2 1 5 5 H 1.48501 * 109.47179 * 30.00375 * 3 2 1 6 6 H 1.48503 * 109.47060 * 150.00375 * 3 2 1 7 7 C 1.38809 * 119.99855 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00350 * 0.02562 * 7 2 1 9 9 N 1.36939 * 119.99895 * 179.97438 * 7 2 1 10 10 C 1.46505 * 120.00179 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46975 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47398 * 295.00025 * 11 10 9 13 13 N 1.46500 * 109.47023 * 55.00096 * 11 10 9 14 14 C 1.34777 * 120.00075 * 204.99547 * 13 11 10 15 15 O 1.21279 * 119.99824 * 0.02562 * 14 13 11 16 16 C 1.50699 * 120.00179 * 179.97438 * 14 13 11 17 17 H 1.09007 * 109.53712 * 300.16495 * 16 14 13 18 18 C 1.54206 * 109.54004 * 180.02562 * 16 14 13 19 19 C 1.46289 * 111.98770 * 162.60577 * 18 16 14 20 20 C 1.54108 * 112.20411 * 61.41249 * 19 18 16 21 21 O 1.40324 * 108.70956 * 280.44107 * 20 19 18 22 22 C 1.43987 * 116.58170 * 95.03768 * 21 20 19 23 23 C 1.50625 * 109.53848 * 60.41270 * 16 14 13 24 24 C 1.53001 * 109.46886 * 174.99528 * 11 10 9 25 25 C 1.53000 * 109.46886 * 180.02562 * 24 11 10 26 26 C 1.52997 * 109.47060 * 180.02562 * 25 24 11 27 27 C 1.53006 * 109.47127 * 300.00449 * 26 25 24 28 28 C 1.52997 * 109.47164 * 59.99836 * 27 26 25 29 29 C 1.52996 * 109.47302 * 300.00217 * 24 11 10 30 30 H 0.96998 * 120.00289 * 359.97438 * 1 2 3 31 31 H 0.97002 * 119.99612 * 0.02562 * 9 7 2 32 32 H 1.08998 * 109.46695 * 60.00257 * 10 9 7 33 33 H 1.09000 * 109.46646 * 300.00048 * 10 9 7 34 34 H 0.97006 * 120.00223 * 24.99882 * 13 11 10 35 35 H 1.08995 * 108.97795 * 283.25156 * 18 16 14 36 36 H 1.09005 * 108.97697 * 41.95646 * 18 16 14 37 37 H 1.08998 * 108.93544 * 182.11711 * 19 18 16 38 38 H 1.09002 * 108.93399 * 300.80034 * 19 18 16 39 39 H 1.09005 * 109.59683 * 40.20756 * 20 19 18 40 40 H 1.08999 * 109.60050 * 160.51613 * 20 19 18 41 41 H 1.08995 * 108.69321 * 78.91286 * 22 21 20 42 42 H 1.08996 * 108.69574 * 197.01107 * 22 21 20 43 43 H 1.08994 * 108.88549 * 330.97527 * 23 16 14 44 44 H 1.08997 * 108.87875 * 89.43386 * 23 16 14 45 45 H 1.09001 * 109.46652 * 60.00345 * 24 11 10 46 46 H 1.09002 * 109.47398 * 300.00496 * 25 24 11 47 47 H 1.09001 * 109.47194 * 60.00677 * 25 24 11 48 48 H 1.08998 * 109.47533 * 59.99948 * 26 25 24 49 49 H 1.08996 * 109.47853 * 180.02562 * 26 25 24 50 50 H 1.09001 * 109.47002 * 299.99574 * 27 26 25 51 51 H 1.09000 * 109.47050 * 179.97438 * 27 26 25 52 52 H 1.09002 * 109.47045 * 180.02562 * 28 27 26 53 53 H 1.09001 * 109.47375 * 59.99966 * 28 27 26 54 54 H 1.08992 * 109.47554 * 299.99692 * 29 24 11 55 55 H 1.09004 * 109.47108 * 59.99942 * 29 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1375 -0.0014 9 7 3.3797 -1.2021 -0.0011 10 6 4.1122 -2.4709 -0.0022 11 6 5.6164 -2.1912 -0.0032 12 1 5.8936 -1.6974 -0.9346 13 7 5.9526 -1.3236 1.1283 14 6 7.0505 -0.5436 1.0766 15 8 7.7599 -0.5596 0.0930 16 6 7.3960 0.3493 2.2403 17 1 6.5806 1.0512 2.4160 18 6 8.6885 1.1294 1.9259 19 6 8.8573 2.2866 2.8049 20 6 8.9678 1.8807 4.2874 21 8 7.6794 1.6264 4.7817 22 6 7.2419 0.2547 4.7648 23 6 7.6145 -0.4900 3.4718 24 6 6.3805 -3.5109 0.1214 25 6 7.8848 -3.2312 0.1210 26 6 8.6489 -4.5509 0.2450 27 6 8.2594 -5.2449 1.5518 28 6 6.7552 -5.5245 1.5522 29 6 5.9915 -4.2040 1.4287 30 1 -0.4850 0.8400 0.0004 31 1 3.8646 -0.3621 -0.0007 32 1 3.8485 -3.0418 -0.8925 33 1 3.8492 -3.0430 0.8875 34 1 5.3850 -1.3105 1.9149 35 1 9.5429 0.4638 2.0482 36 1 8.6531 1.4719 0.8917 37 1 9.7623 2.8211 2.5161 38 1 8.0012 2.9504 2.6841 39 1 9.5774 0.9813 4.3758 40 1 9.4264 2.6903 4.8550 41 1 7.6920 -0.2659 5.6100 42 1 6.1581 0.2321 4.8786 43 1 7.0070 -1.3919 3.3964 44 1 8.6647 -0.7775 3.5209 45 1 6.1304 -4.1564 -0.7205 46 1 8.1623 -2.7371 -0.8101 47 1 8.1346 -2.5859 0.9632 48 1 8.3991 -5.1960 -0.5973 49 1 9.7205 -4.3517 0.2452 50 1 8.5093 -4.5999 2.3942 51 1 8.8035 -6.1853 1.6400 52 1 6.4777 -6.0185 2.4833 53 1 6.5054 -6.1696 0.7098 54 1 6.2416 -3.5585 2.2706 55 1 4.9198 -4.4032 1.4294 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271335471.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:47 Heat of formation + Delta-G solvation = -119.186555 kcal Electronic energy + Delta-G solvation = -32445.555142 eV Core-core repulsion = 28480.569140 eV Total energy + Delta-G solvation = -3964.986002 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.78768 -40.23711 -38.99091 -37.31675 -35.70789 -35.38764 -33.87744 -33.11090 -32.04116 -31.57825 -29.02190 -28.15689 -26.84389 -25.40105 -23.90299 -23.09534 -22.88723 -21.87036 -21.49490 -20.82346 -20.38253 -19.74454 -18.33620 -17.82527 -17.33854 -16.89046 -16.62669 -16.27683 -16.02968 -15.73301 -15.65698 -15.28176 -14.98203 -14.94634 -14.76793 -14.65706 -14.48394 -14.35274 -13.99873 -13.81744 -13.69157 -13.49440 -13.17001 -12.98599 -12.86758 -12.59536 -12.54836 -12.32444 -12.17842 -12.05674 -11.97558 -11.90291 -11.81504 -11.72815 -11.67039 -11.38978 -11.30438 -11.19101 -11.03010 -10.78880 -10.69083 -10.30474 -9.88404 -9.31513 -8.04918 -5.37585 1.32890 1.35986 1.42146 1.67403 2.20617 2.43949 2.94165 3.27726 3.44334 3.56699 3.64088 3.77432 3.82503 3.86117 3.96762 4.01738 4.04680 4.12709 4.26520 4.29610 4.38740 4.47605 4.49765 4.51780 4.54746 4.58863 4.65723 4.67897 4.70269 4.74259 4.81282 4.82918 4.89664 4.95271 5.02779 5.05958 5.08097 5.13841 5.16674 5.23775 5.25726 5.28064 5.33457 5.34964 5.36684 5.43912 5.53498 5.60059 5.67239 5.75220 6.18820 6.48085 6.59193 7.05180 7.28974 7.80908 7.98862 9.16436 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.007136 B = 0.005398 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3922.976755 B = 5186.332264 C = 7948.153442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.055 4.055 3 Si 0.945 3.055 4 H -0.289 1.289 5 H -0.294 1.294 6 H -0.255 1.255 7 C -0.228 4.228 8 H 0.063 0.937 9 N -0.756 5.756 10 C 0.147 3.853 11 C 0.150 3.850 12 H 0.062 0.938 13 N -0.709 5.709 14 C 0.517 3.483 15 O -0.567 6.567 16 C -0.103 4.103 17 H 0.092 0.908 18 C -0.093 4.093 19 C -0.149 4.149 20 C 0.065 3.935 21 O -0.405 6.405 22 C 0.062 3.938 23 C -0.139 4.139 24 C -0.085 4.085 25 C -0.094 4.094 26 C -0.117 4.117 27 C -0.113 4.113 28 C -0.115 4.115 29 C -0.112 4.112 30 H 0.257 0.743 31 H 0.363 0.637 32 H 0.037 0.963 33 H 0.051 0.949 34 H 0.407 0.593 35 H 0.069 0.931 36 H 0.053 0.947 37 H 0.087 0.913 38 H 0.056 0.944 39 H 0.065 0.935 40 H 0.097 0.903 41 H 0.073 0.927 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.081 0.919 45 H 0.078 0.922 46 H 0.042 0.958 47 H 0.054 0.946 48 H 0.060 0.940 49 H 0.059 0.941 50 H 0.058 0.942 51 H 0.069 0.931 52 H 0.070 0.930 53 H 0.061 0.939 54 H 0.063 0.937 55 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.714 -5.780 10.375 26.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C -0.247 4.247 3 Si 0.774 3.226 4 H -0.216 1.216 5 H -0.220 1.220 6 H -0.180 1.180 7 C -0.359 4.359 8 H 0.081 0.919 9 N -0.402 5.402 10 C 0.021 3.979 11 C 0.045 3.955 12 H 0.081 0.919 13 N -0.360 5.360 14 C 0.304 3.696 15 O -0.446 6.446 16 C -0.124 4.124 17 H 0.110 0.890 18 C -0.131 4.131 19 C -0.186 4.186 20 C -0.012 4.012 21 O -0.324 6.324 22 C -0.014 4.014 23 C -0.177 4.177 24 C -0.105 4.105 25 C -0.132 4.132 26 C -0.155 4.155 27 C -0.151 4.151 28 C -0.152 4.152 29 C -0.149 4.149 30 H 0.066 0.934 31 H 0.196 0.804 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.243 0.757 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.106 0.894 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.115 0.885 41 H 0.091 0.909 42 H 0.108 0.892 43 H 0.106 0.894 44 H 0.100 0.900 45 H 0.097 0.903 46 H 0.061 0.939 47 H 0.072 0.928 48 H 0.079 0.921 49 H 0.078 0.922 50 H 0.077 0.923 51 H 0.088 0.912 52 H 0.088 0.912 53 H 0.080 0.920 54 H 0.082 0.918 55 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 23.897 -5.779 9.736 26.443 hybrid contribution -0.440 1.117 -0.404 1.266 sum 23.457 -4.662 9.332 25.672 Atomic orbital electron populations 1.69855 1.06884 1.26519 1.59789 1.25346 0.95904 1.00596 1.02895 0.85561 0.78716 0.80707 0.77630 1.21577 1.22019 1.17975 1.19026 0.82476 0.93519 1.40881 0.91856 1.42698 1.02524 1.03952 1.90977 1.21164 0.88829 0.87865 1.00024 1.21127 0.93543 0.91345 0.89509 0.91938 1.45980 1.26761 1.42802 1.20445 1.20856 0.80155 0.79722 0.88819 1.90664 1.51313 1.67707 1.34938 1.21085 1.00766 0.97244 0.93325 0.88955 1.20362 0.95438 0.97409 0.99895 1.21142 1.03144 0.98034 0.96328 1.22474 0.84417 1.01401 0.92932 1.87460 1.33751 1.27293 1.83907 1.23038 1.00807 0.81586 0.95920 1.21912 1.04022 0.99017 0.92755 1.21436 0.95144 0.94409 0.99507 1.21466 0.93741 0.96857 1.01134 1.21551 0.99340 0.96209 0.98393 1.21496 0.96067 1.00355 0.97133 1.21517 0.94952 0.96639 1.02135 1.21608 1.00028 0.96794 0.96499 0.93357 0.80381 0.94535 0.93130 0.75697 0.91212 0.92776 0.89417 0.92507 0.91704 0.88507 0.90869 0.89196 0.89426 0.90045 0.90333 0.93913 0.92768 0.92087 0.92219 0.92294 0.91211 0.91169 0.92007 0.91799 0.91831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.20 13.97 21.65 0.30 -61.89 16 2 C -0.06 -3.24 5.50 84.86 0.47 -2.77 16 3 Si 0.95 46.11 27.74 68.60 1.90 48.02 16 4 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 5 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 6 H -0.25 -11.28 6.52 99.48 0.65 -10.63 16 7 C -0.23 -12.66 10.47 84.03 0.88 -11.78 16 8 H 0.06 3.81 8.06 -2.91 -0.02 3.79 16 9 N -0.76 -34.03 5.24 -343.44 -1.80 -35.83 16 10 C 0.15 5.18 5.60 86.38 0.48 5.67 16 11 C 0.15 4.43 2.16 44.99 0.10 4.53 16 12 H 0.06 2.18 7.58 -2.39 -0.02 2.16 16 13 N -0.71 -19.21 3.26 -442.53 -1.44 -20.66 16 14 C 0.52 14.37 5.42 87.66 0.48 14.85 16 15 O -0.57 -19.00 12.77 -3.03 -0.04 -19.04 16 16 C -0.10 -2.31 2.22 -11.90 -0.03 -2.34 16 17 H 0.09 2.31 7.83 -2.38 -0.02 2.29 16 18 C -0.09 -1.97 4.30 28.94 0.12 -1.85 16 19 C -0.15 -2.64 5.47 28.90 0.16 -2.48 16 20 C 0.06 1.00 6.38 72.36 0.46 1.46 16 21 O -0.40 -8.13 10.17 -143.47 -1.46 -9.58 16 22 C 0.06 1.00 6.67 72.25 0.48 1.48 16 23 C -0.14 -2.29 4.81 30.09 0.14 -2.14 16 24 C -0.09 -2.02 2.07 -10.79 -0.02 -2.04 16 25 C -0.09 -2.25 3.73 30.59 0.11 -2.13 16 26 C -0.12 -2.22 5.92 30.60 0.18 -2.04 16 27 C -0.11 -1.81 5.92 30.60 0.18 -1.63 16 28 C -0.11 -1.93 5.93 30.61 0.18 -1.75 16 29 C -0.11 -2.26 4.70 30.61 0.14 -2.12 16 30 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 31 H 0.36 16.26 5.20 -92.71 -0.48 15.78 16 32 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.05 1.69 6.18 -2.39 -0.01 1.68 16 34 H 0.41 10.35 8.09 -92.70 -0.75 9.60 16 35 H 0.07 1.36 7.60 -2.39 -0.02 1.34 16 36 H 0.05 1.39 7.42 -2.38 -0.02 1.38 16 37 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.06 1.19 8.13 -2.39 -0.02 1.17 16 39 H 0.06 0.83 6.98 -2.38 -0.02 0.81 16 40 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.09 1.34 6.98 -2.39 -0.02 1.33 16 44 H 0.08 1.19 6.84 -2.39 -0.02 1.17 16 45 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 46 H 0.04 1.22 7.53 -2.39 -0.02 1.21 16 47 H 0.05 1.37 5.78 -2.39 -0.01 1.35 16 48 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 49 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 50 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 51 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 52 H 0.07 1.04 8.14 -2.39 -0.02 1.03 16 53 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 54 H 0.06 1.24 7.60 -2.39 -0.02 1.23 16 55 H 0.06 1.39 6.32 -2.38 -0.02 1.37 16 Total: -1.00 -68.96 401.27 1.57 -67.39 By element: Atomic # 1 Polarization: 39.10 SS G_CDS: -0.42 Total: 38.69 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: 4.53 Total: -7.09 kcal Atomic # 7 Polarization: -115.44 SS G_CDS: -2.94 Total: -118.38 kcal Atomic # 8 Polarization: -27.12 SS G_CDS: -1.50 Total: -28.62 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 1.90 Total: 48.02 kcal Total: -68.96 1.57 -67.39 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271335471.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.801 kcal (2) G-P(sol) polarization free energy of solvation -68.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds