Wall clock time and date at job start Tue Mar 31 2020 21:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 119.99920 * 2 1 4 4 H 1.48505 * 109.46801 * 269.99484 * 3 2 1 5 5 H 1.48495 * 109.47068 * 29.99822 * 3 2 1 6 6 H 1.48507 * 109.46587 * 150.00012 * 3 2 1 7 7 C 1.38810 * 119.99536 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99845 * 196.01952 * 7 2 1 9 9 N 1.36932 * 120.00120 * 16.02677 * 7 2 1 10 10 C 1.46917 * 120.64562 * 28.56217 * 9 7 2 11 11 C 1.53192 * 108.77878 * 126.37982 * 10 9 7 12 12 C 1.53050 * 109.33263 * 54.63455 * 11 10 9 13 13 C 1.53025 * 109.54963 * 298.69447 * 12 11 10 14 14 C 1.46941 * 120.64128 * 208.58193 * 9 7 2 15 15 C 1.53033 * 109.44005 * 58.70835 * 12 11 10 16 16 C 1.53197 * 109.33283 * 181.23120 * 15 12 11 17 17 N 1.46928 * 108.77891 * 305.37417 * 16 15 12 18 18 C 1.34775 * 120.64278 * 233.61827 * 17 16 15 19 19 O 1.21287 * 119.99852 * 355.68353 * 18 17 16 20 20 C 1.50708 * 120.00027 * 175.68303 * 18 17 16 21 21 C 1.52998 * 115.54626 * 68.78589 * 20 18 17 22 22 C 1.53004 * 109.46973 * 61.27789 * 21 20 18 23 23 F 1.39902 * 109.46632 * 174.91229 * 22 21 20 24 24 C 1.53000 * 117.49900 * 214.45706 * 20 18 17 25 25 C 1.52995 * 117.49611 * 283.11654 * 20 18 17 26 26 C 1.46926 * 118.71369 * 53.89360 * 17 16 15 27 27 C 1.53043 * 109.38863 * 178.73377 * 12 11 10 28 28 H 0.96999 * 119.99760 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.58814 * 6.59245 * 10 9 7 30 30 H 1.09008 * 109.58916 * 246.16706 * 10 9 7 31 31 H 1.08993 * 109.49237 * 294.67684 * 11 10 9 32 32 H 1.09004 * 109.49418 * 174.59013 * 11 10 9 33 33 H 1.08991 * 109.49526 * 181.25971 * 13 12 11 34 34 H 1.09005 * 109.49034 * 301.34726 * 13 12 11 35 35 H 1.09000 * 109.58445 * 353.40370 * 14 9 7 36 36 H 1.08997 * 109.58340 * 113.68004 * 14 9 7 37 37 H 1.08994 * 109.49624 * 61.27409 * 15 12 11 38 38 H 1.08998 * 109.49338 * 301.18454 * 15 12 11 39 39 H 1.08997 * 109.58215 * 185.58582 * 16 15 12 40 40 H 1.08995 * 109.58498 * 65.16528 * 16 15 12 41 41 H 1.08991 * 109.47342 * 301.26903 * 21 20 18 42 42 H 1.09001 * 109.46676 * 181.27101 * 21 20 18 43 43 H 1.08996 * 109.47501 * 54.91065 * 22 21 20 44 44 H 1.08999 * 109.46789 * 294.90511 * 22 21 20 45 45 H 1.08999 * 117.49773 * 215.00682 * 24 20 18 46 46 H 1.09005 * 117.49724 * 0.02562 * 24 20 18 47 47 H 1.08998 * 117.50454 * 359.97438 * 25 20 18 48 48 H 1.09002 * 117.49527 * 144.97275 * 25 20 18 49 49 H 1.09002 * 109.58486 * 65.87897 * 26 17 16 50 50 H 1.08996 * 109.58981 * 186.30685 * 26 17 16 51 51 H 1.08996 * 109.49732 * 298.68099 * 27 12 11 52 52 H 1.08996 * 109.49765 * 58.76662 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0587 -1.2203 0.2587 9 7 1.3654 -2.3651 -0.3263 10 6 0.2145 -2.3521 -1.2395 11 6 0.4759 -3.3449 -2.3765 12 6 0.7932 -4.7204 -1.7851 13 6 2.0544 -4.6288 -0.9234 14 6 1.8108 -3.6502 0.2298 15 6 -0.3812 -5.1870 -0.9220 16 6 -0.0484 -6.5499 -0.3067 17 7 0.3148 -7.4797 -1.3849 18 6 -0.3098 -8.6677 -1.5068 19 8 -1.1250 -9.0122 -0.6775 20 6 0.0048 -9.5682 -2.6736 21 6 1.4039 -10.1875 -2.6707 22 6 1.5718 -11.0621 -1.4266 23 9 2.8056 -11.7194 -1.4818 24 6 -1.1386 -10.4085 -3.2459 25 6 -0.6050 -9.2066 -4.0294 26 6 1.3761 -7.0918 -2.3239 27 6 1.0236 -5.7207 -2.9204 28 1 -0.4850 0.8401 -0.0004 29 1 0.0858 -1.3511 -1.6509 30 1 -0.6850 -2.6453 -0.6980 31 1 1.3215 -3.0012 -2.9722 32 1 -0.4096 -3.4160 -3.0081 33 1 2.2923 -5.6133 -0.5208 34 1 2.8859 -4.2736 -1.5322 35 1 2.7358 -3.5058 0.7880 36 1 1.0422 -4.0475 0.8927 37 1 -1.2744 -5.2754 -1.5403 38 1 -0.5587 -4.4627 -0.1271 39 1 -0.9183 -6.9318 0.2276 40 1 0.7893 -6.4448 0.3827 41 1 2.1520 -9.3949 -2.6614 42 1 1.5326 -10.7982 -3.5643 43 1 0.7692 -11.7986 -1.3891 44 1 1.5330 -10.4366 -0.5348 45 1 -0.8941 -11.4025 -3.6203 46 1 -2.1185 -10.3097 -2.7787 47 1 -1.2340 -8.3178 -4.0775 48 1 -0.0092 -9.4096 -4.9194 49 1 2.3272 -7.0295 -1.7949 50 1 1.4469 -7.8314 -3.1213 51 1 0.1177 -5.8045 -3.5207 52 1 1.8455 -5.3760 -3.5477 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274885051.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:56 Heat of formation + Delta-G solvation = -63.891947 kcal Electronic energy + Delta-G solvation = -31608.258528 eV Core-core repulsion = 27522.209974 eV Total energy + Delta-G solvation = -4086.048553 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -48.60690 -41.92985 -40.40745 -37.96674 -37.35742 -35.09541 -33.02729 -32.40401 -31.93125 -31.61015 -29.54130 -26.82935 -25.88537 -24.91101 -24.19698 -23.74619 -23.30076 -22.91874 -21.74367 -20.04713 -19.16187 -18.31164 -17.83776 -17.36191 -17.08874 -16.88153 -16.76459 -16.14692 -15.91216 -15.78869 -15.65397 -15.31275 -15.20987 -15.08082 -14.84849 -14.66161 -14.54882 -14.00649 -13.85400 -13.37125 -13.21136 -13.14499 -13.03272 -12.89967 -12.74870 -12.55787 -12.52184 -12.37361 -12.23544 -12.13605 -12.07010 -11.80862 -11.76245 -11.66203 -11.46756 -11.18379 -11.08645 -10.99024 -10.89624 -10.63315 -10.48474 -9.60573 -8.61165 -7.85398 -5.31389 1.46048 1.46953 1.50989 1.55813 1.92851 2.51465 2.65567 3.28326 3.34410 3.48222 3.72757 3.73838 3.75859 3.81980 3.83569 3.88369 3.99891 4.13475 4.14215 4.19111 4.27386 4.33719 4.46092 4.50674 4.55805 4.63861 4.69602 4.74649 4.76466 4.80361 4.82281 4.85213 4.90003 4.96252 4.99657 5.01402 5.07044 5.08757 5.11802 5.19439 5.22793 5.30184 5.37563 5.44753 5.48817 5.58683 5.63577 5.68494 5.84755 6.41362 6.42421 7.12117 7.17603 7.90300 8.41316 9.19822 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.023550 B = 0.002709 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.656246 B =10334.611367 C =10664.567293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.052 4.052 3 Si 0.965 3.035 4 H -0.285 1.285 5 H -0.297 1.297 6 H -0.269 1.269 7 C -0.259 4.259 8 H 0.064 0.936 9 N -0.608 5.608 10 C 0.179 3.821 11 C -0.117 4.117 12 C -0.041 4.041 13 C -0.111 4.111 14 C 0.140 3.860 15 C -0.113 4.113 16 C 0.118 3.882 17 N -0.597 5.597 18 C 0.543 3.457 19 O -0.585 6.585 20 C -0.166 4.166 21 C -0.104 4.104 22 C 0.060 3.940 23 F -0.228 7.228 24 C -0.145 4.145 25 C -0.135 4.135 26 C 0.103 3.897 27 C -0.115 4.115 28 H 0.248 0.752 29 H 0.045 0.955 30 H -0.005 1.005 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.078 0.922 34 H 0.059 0.941 35 H 0.045 0.955 36 H 0.012 0.988 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.094 0.906 42 H 0.112 0.888 43 H 0.085 0.915 44 H 0.058 0.942 45 H 0.128 0.872 46 H 0.083 0.917 47 H 0.092 0.908 48 H 0.136 0.864 49 H 0.081 0.919 50 H 0.115 0.885 51 H 0.069 0.931 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.640 -22.376 -11.597 25.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.247 4.247 3 Si 0.793 3.207 4 H -0.212 1.212 5 H -0.224 1.224 6 H -0.194 1.194 7 C -0.390 4.390 8 H 0.082 0.918 9 N -0.332 5.332 10 C 0.054 3.946 11 C -0.156 4.156 12 C -0.041 4.041 13 C -0.149 4.149 14 C 0.015 3.985 15 C -0.152 4.152 16 C -0.004 4.004 17 N -0.328 5.328 18 C 0.332 3.668 19 O -0.466 6.466 20 C -0.170 4.170 21 C -0.142 4.142 22 C 0.005 3.995 23 F -0.210 7.210 24 C -0.183 4.183 25 C -0.172 4.172 26 C -0.019 4.019 27 C -0.153 4.153 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.013 0.987 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.030 0.970 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.112 0.888 42 H 0.130 0.870 43 H 0.103 0.897 44 H 0.077 0.923 45 H 0.146 0.854 46 H 0.102 0.898 47 H 0.110 0.890 48 H 0.155 0.845 49 H 0.100 0.900 50 H 0.133 0.867 51 H 0.088 0.912 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.170 -22.422 -11.128 25.126 hybrid contribution -0.121 1.667 0.804 1.855 sum 2.050 -20.755 -10.324 23.271 Atomic orbital electron populations 1.70187 1.06636 1.25640 1.55748 1.25786 0.96022 1.01412 1.01470 0.85300 0.78088 0.79729 0.77546 1.21159 1.22389 1.19377 1.19514 0.92459 0.86037 1.40980 0.91801 1.44277 1.35278 1.02407 1.51226 1.20554 0.87620 0.97155 0.89282 1.22036 1.00405 0.95400 0.97772 1.20326 0.94440 0.94143 0.95237 1.21985 0.96980 0.98739 0.97243 1.21075 0.96719 0.86326 0.94417 1.21860 0.98086 0.95542 0.99667 1.21497 1.00988 0.88487 0.89450 1.48138 1.37660 1.16503 1.30519 1.20142 0.79509 0.81277 0.85863 1.90675 1.36784 1.74530 1.44597 1.21180 0.97190 1.03693 0.94902 1.21778 0.93052 1.00036 0.99289 1.22003 0.81747 0.96075 0.99667 1.92748 1.47062 1.83342 1.97816 1.23133 0.96267 0.97524 1.01348 1.23244 1.02011 0.99375 0.92615 1.22243 0.89581 0.97114 0.92920 1.22012 1.02937 0.93521 0.96822 0.94285 0.93652 0.98652 0.92826 0.92209 0.90396 0.92201 0.93668 0.96992 0.92591 0.92461 0.91154 0.90819 0.88808 0.86993 0.89693 0.92341 0.85399 0.89801 0.88997 0.84549 0.90037 0.86699 0.91234 0.89199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.73 11.17 21.65 0.24 -55.49 16 2 C -0.05 -2.90 4.94 84.86 0.42 -2.48 16 3 Si 0.96 45.02 29.58 68.60 2.03 47.05 16 4 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 5 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.26 -14.24 9.59 84.03 0.81 -13.43 16 8 H 0.06 3.43 7.88 -2.91 -0.02 3.41 16 9 N -0.61 -29.99 2.99 -699.10 -2.09 -32.08 16 10 C 0.18 8.48 4.83 86.36 0.42 8.90 16 11 C -0.12 -4.10 4.90 30.68 0.15 -3.95 16 12 C -0.04 -1.15 0.51 -52.13 -0.03 -1.18 16 13 C -0.11 -3.29 4.14 30.67 0.13 -3.16 16 14 C 0.14 5.59 6.04 86.36 0.52 6.11 16 15 C -0.11 -3.40 4.15 30.67 0.13 -3.27 16 16 C 0.12 3.19 5.95 86.36 0.51 3.70 16 17 N -0.60 -13.13 2.97 -818.05 -2.43 -15.56 16 18 C 0.54 12.68 6.26 87.66 0.55 13.23 16 19 O -0.59 -18.75 16.21 -3.05 -0.05 -18.80 16 20 C -0.17 -2.42 0.80 -52.93 -0.04 -2.46 16 21 C -0.10 -1.15 5.17 30.60 0.16 -0.99 16 22 C 0.06 0.92 7.30 71.98 0.53 1.45 16 23 F -0.23 -4.34 17.36 44.97 0.78 -3.56 16 24 C -0.15 -1.85 9.78 30.62 0.30 -1.55 16 25 C -0.14 -1.40 9.44 30.62 0.29 -1.12 16 26 C 0.10 1.67 5.10 86.51 0.44 2.11 16 27 C -0.11 -2.23 4.92 30.82 0.15 -2.08 16 28 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 29 H 0.05 2.48 6.06 -2.39 -0.01 2.47 16 30 H 0.00 -0.23 6.67 -2.38 -0.02 -0.25 16 31 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 33 H 0.08 1.92 4.97 -2.39 -0.01 1.91 16 34 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 35 H 0.04 1.81 7.93 -2.39 -0.02 1.79 16 36 H 0.01 0.50 6.74 -2.39 -0.02 0.48 16 37 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.06 2.11 4.99 -2.39 -0.01 2.10 16 39 H 0.07 2.14 7.03 -2.39 -0.02 2.12 16 40 H 0.07 1.94 6.72 -2.39 -0.02 1.93 16 41 H 0.09 0.93 5.95 -2.39 -0.01 0.91 16 42 H 0.11 0.75 8.11 -2.39 -0.02 0.73 16 43 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.06 1.07 7.77 -2.39 -0.02 1.06 16 45 H 0.13 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.08 1.45 8.06 -2.38 -0.02 1.43 16 47 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 48 H 0.14 0.64 8.14 -2.39 -0.02 0.62 16 49 H 0.08 1.25 6.66 -2.39 -0.02 1.23 16 50 H 0.12 1.25 4.46 -2.39 -0.01 1.24 16 51 H 0.07 1.31 8.14 -2.39 -0.02 1.30 16 52 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -70.21 385.14 4.82 -65.39 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: 0.91 Total: 13.23 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: 5.43 Total: -0.18 kcal Atomic # 7 Polarization: -98.86 SS G_CDS: -4.28 Total: -103.13 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -0.05 Total: -18.80 kcal Atomic # 9 Polarization: -4.34 SS G_CDS: 0.78 Total: -3.56 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -70.21 4.82 -65.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274885051.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.496 kcal (2) G-P(sol) polarization free energy of solvation -70.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds