Wall clock time and date at job start Tue Mar 31 2020 21:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34784 * 120.00152 * 2 1 4 4 O 1.21591 * 119.99854 * 0.02562 * 3 2 1 5 5 N 1.34776 * 120.00170 * 180.02562 * 3 2 1 6 6 C 1.46499 * 120.00059 * 179.97438 * 5 3 2 7 7 C 1.50696 * 109.47235 * 179.97438 * 6 5 3 8 8 O 1.21284 * 119.99837 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00132 * 179.97438 * 7 6 5 10 10 C 1.46928 * 120.62698 * 357.91946 * 9 7 6 11 11 C 1.53190 * 108.89407 * 233.55199 * 10 9 7 12 12 C 1.53069 * 109.29880 * 305.58613 * 11 10 9 13 13 C 1.53040 * 109.65860 * 61.14999 * 12 11 10 14 14 C 1.46924 * 120.63141 * 177.94063 * 9 7 6 15 15 H 1.08998 * 109.58689 * 246.30194 * 14 9 7 16 16 C 1.52997 * 109.58522 * 6.58778 * 14 9 7 17 17 H 1.09007 * 110.88667 * 305.07745 * 16 14 9 18 18 C 1.55164 * 111.00135 * 181.20422 * 16 14 9 19 19 C 1.54376 * 102.91619 * 206.45028 * 18 16 14 20 20 N 1.47022 * 107.28963 * 22.13931 * 19 18 16 21 21 C 1.36938 * 125.64703 * 181.05448 * 20 19 18 22 22 H 1.07992 * 119.99961 * 185.05366 * 21 20 19 23 23 C 1.38813 * 119.99568 * 5.05190 * 21 20 19 24 24 N 1.31609 * 120.00765 * 354.88282 * 23 21 20 25 25 Si 1.86807 * 119.99444 * 174.88056 * 23 21 20 26 26 H 1.48506 * 109.46889 * 95.00020 * 25 23 21 27 27 H 1.48503 * 109.47398 * 214.99627 * 25 23 21 28 28 H 1.48495 * 109.47549 * 335.00377 * 25 23 21 29 29 C 1.47416 * 108.70248 * 1.08953 * 20 19 18 30 30 H 1.09006 * 109.47180 * 299.99778 * 1 2 3 31 31 H 1.08996 * 109.47030 * 59.99924 * 1 2 3 32 32 H 1.09002 * 109.47204 * 180.02562 * 1 2 3 33 33 H 0.97001 * 120.00196 * 180.02562 * 2 1 3 34 34 H 0.96997 * 119.99647 * 0.02562 * 5 3 2 35 35 H 1.09002 * 109.46933 * 60.00009 * 6 5 3 36 36 H 1.08998 * 109.47146 * 300.00582 * 6 5 3 37 37 H 1.09000 * 109.58936 * 353.41946 * 10 9 7 38 38 H 1.09007 * 109.58081 * 113.69669 * 10 9 7 39 39 H 1.09004 * 109.49321 * 65.39552 * 11 10 9 40 40 H 1.08999 * 109.50045 * 185.48705 * 11 10 9 41 41 H 1.08999 * 109.34673 * 301.12747 * 12 11 10 42 42 H 1.08997 * 109.45242 * 181.24197 * 12 11 10 43 43 H 1.09000 * 109.49823 * 178.75214 * 13 12 11 44 44 H 1.08996 * 109.49996 * 58.65145 * 13 12 11 45 45 H 1.08993 * 110.71950 * 324.78565 * 18 16 14 46 46 H 1.08998 * 110.71957 * 88.06440 * 18 16 14 47 47 H 1.08997 * 109.84742 * 262.72930 * 19 18 16 48 48 H 1.09003 * 109.89509 * 141.57909 * 19 18 16 49 49 H 0.96999 * 120.00504 * 179.97438 * 24 23 21 50 50 H 1.09001 * 110.36559 * 217.03292 * 29 20 19 51 51 H 1.09007 * 110.45909 * 94.75812 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2203 0.0005 5 7 3.4867 1.1673 -0.0005 6 6 4.2192 2.4360 -0.0011 7 6 5.7008 2.1606 -0.0010 8 8 6.1050 1.0171 -0.0009 9 7 6.5766 3.1850 -0.0019 10 6 6.1027 4.5750 -0.0490 11 6 6.7894 5.2940 -1.2144 12 6 8.3068 5.1485 -1.0750 13 6 8.6887 3.6673 -1.1248 14 6 8.0234 2.9331 0.0436 15 1 8.4286 3.2997 0.9867 16 6 8.2864 1.4308 -0.0783 17 1 7.7383 0.8772 0.6842 18 6 9.8056 1.1244 -0.0036 19 6 9.9304 -0.1966 -0.7927 20 7 8.7608 -0.2885 -1.6787 21 6 8.4852 -1.3236 -2.5318 22 1 7.6412 -1.2604 -3.2026 23 6 9.2908 -2.4540 -2.5344 24 7 10.3762 -2.4904 -1.7910 25 14 8.8342 -3.9238 -3.5932 26 1 9.5531 -3.8420 -4.8900 27 1 9.2170 -5.1762 -2.8931 28 1 7.3696 -3.9214 -3.8383 29 6 7.9343 0.9186 -1.4972 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.9500 -0.8400 -0.0004 34 1 3.9716 0.3272 -0.0013 35 1 3.9562 3.0077 0.8889 36 1 3.9554 3.0074 -0.8910 37 1 5.0228 4.5881 -0.1969 38 1 6.3495 5.0770 0.8865 39 1 6.4682 4.8492 -2.1563 40 1 6.5201 6.3501 -1.1998 41 1 8.6244 5.5736 -0.1229 42 1 8.7987 5.6780 -1.8909 43 1 9.7714 3.5680 -1.0476 44 1 8.3495 3.2356 -2.0663 45 1 10.3825 1.9154 -0.4826 46 1 10.1211 0.9877 1.0307 47 1 9.9400 -1.0403 -0.1027 48 1 10.8450 -0.1895 -1.3856 49 1 10.9389 -3.2805 -1.7926 50 1 6.8756 0.6661 -1.5575 51 1 8.1876 1.6699 -2.2453 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277285793.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:50 Heat of formation + Delta-G solvation = -0.590810 kcal Electronic energy + Delta-G solvation = -31567.846986 eV Core-core repulsion = 27504.463338 eV Total energy + Delta-G solvation = -4063.383648 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -40.94267 -39.86367 -37.62417 -36.83624 -34.82355 -34.40716 -33.12211 -32.82829 -30.98742 -28.92393 -28.66330 -27.08835 -25.98365 -24.94641 -24.28281 -22.91226 -21.14824 -20.96432 -20.22872 -19.65881 -19.12823 -18.11438 -16.94064 -16.78995 -16.23900 -15.98373 -15.56619 -15.27216 -15.09930 -14.54369 -14.51698 -14.40042 -14.29935 -13.97261 -13.72442 -13.51787 -13.16904 -13.00987 -12.84930 -12.63978 -12.40676 -12.18689 -12.06744 -11.68092 -11.60133 -11.21971 -11.04036 -10.83299 -10.78716 -10.69498 -10.42532 -10.39906 -10.00483 -9.91707 -9.71978 -9.61373 -9.51537 -9.45383 -8.97866 -8.79551 -8.42130 -8.32318 -6.58129 -5.57664 -2.87131 2.45437 2.63515 3.07161 3.11096 3.46262 3.51377 3.53668 4.19724 4.34984 4.61996 4.63134 4.77349 4.86684 5.01035 5.07048 5.21304 5.22420 5.24658 5.28299 5.35265 5.40420 5.50933 5.59135 5.64061 5.67005 5.79043 5.80720 5.83036 5.90816 6.02977 6.09364 6.17765 6.25916 6.28609 6.33829 6.42050 6.51933 6.69220 6.77219 6.80297 6.91165 7.10920 7.37315 7.44504 7.69900 7.81466 7.89417 7.96884 8.28124 8.43419 8.47970 9.38293 10.00399 10.69231 11.54614 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.007853 B = 0.004434 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3564.814454 B = 6313.164834 C = 9267.957272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.751 5.751 3 C 0.707 3.293 4 O -0.598 6.598 5 N -0.733 5.733 6 C 0.122 3.878 7 C 0.489 3.511 8 O -0.489 6.489 9 N -0.603 5.603 10 C 0.105 3.895 11 C -0.135 4.135 12 C -0.119 4.119 13 C -0.141 4.141 14 C 0.162 3.838 15 H 0.069 0.931 16 C -0.096 4.096 17 H 0.107 0.893 18 C -0.150 4.150 19 C 0.181 3.819 20 N -0.603 5.603 21 C -0.215 4.215 22 H 0.073 0.927 23 C -0.012 4.012 24 N -0.923 5.923 25 Si 0.906 3.094 26 H -0.292 1.292 27 H -0.292 1.292 28 H -0.283 1.283 29 C 0.143 3.857 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.401 0.599 34 H 0.411 0.589 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.060 0.940 42 H 0.063 0.937 43 H 0.077 0.923 44 H 0.081 0.919 45 H 0.053 0.947 46 H 0.054 0.946 47 H 0.045 0.955 48 H 0.033 0.967 49 H 0.249 0.751 50 H 0.061 0.939 51 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.295 14.716 6.244 20.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.406 5.406 3 C 0.407 3.593 4 O -0.477 6.477 5 N -0.392 5.392 6 C -0.006 4.006 7 C 0.277 3.723 8 O -0.364 6.364 9 N -0.338 5.338 10 C -0.018 4.018 11 C -0.173 4.173 12 C -0.157 4.157 13 C -0.179 4.179 14 C 0.059 3.941 15 H 0.087 0.913 16 C -0.116 4.116 17 H 0.124 0.876 18 C -0.189 4.189 19 C 0.056 3.944 20 N -0.329 5.329 21 C -0.344 4.344 22 H 0.091 0.909 23 C -0.207 4.207 24 N -0.572 5.572 25 Si 0.737 3.263 26 H -0.219 1.219 27 H -0.218 1.218 28 H -0.208 1.208 29 C 0.018 3.982 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.235 0.765 34 H 0.249 0.751 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.102 0.898 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.096 0.904 44 H 0.100 0.900 45 H 0.072 0.928 46 H 0.072 0.928 47 H 0.063 0.937 48 H 0.051 0.949 49 H 0.059 0.941 50 H 0.079 0.921 51 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges -12.567 14.847 6.197 20.415 hybrid contribution 0.377 -1.453 -0.628 1.627 sum -12.190 13.394 5.569 18.948 Atomic orbital electron populations 1.21380 0.78122 1.01980 1.02132 1.44890 1.07758 1.07342 1.80615 1.15818 0.81420 0.84333 0.77754 1.90908 1.68074 1.30309 1.58431 1.44788 1.04620 1.09934 1.79816 1.20917 0.89152 0.86585 1.03961 1.20408 0.87866 0.85686 0.78369 1.90861 1.77658 1.21318 1.46607 1.47961 1.06653 1.05585 1.73588 1.21765 0.99244 0.81720 0.99034 1.21921 0.96281 1.00304 0.98843 1.21533 0.95280 0.97018 1.01831 1.22185 1.01143 0.94308 1.00219 1.21274 0.77965 0.97178 0.97659 0.91345 1.22873 0.95656 0.91364 1.01676 0.87556 1.23099 0.95607 1.00387 0.99774 1.21060 0.90158 0.91381 0.91751 1.44438 1.23086 1.18717 1.46635 1.19029 1.09781 0.93337 1.12288 0.90893 1.24766 0.97669 0.98079 1.00219 1.69974 1.15035 1.28549 1.43644 0.86183 0.77668 0.82980 0.79486 1.21930 1.21798 1.20829 1.22110 0.95841 0.88701 0.91566 0.92464 0.92419 0.90649 0.76523 0.75133 0.89040 0.89037 0.89782 0.91208 0.91306 0.90844 0.92103 0.91822 0.90421 0.90026 0.92823 0.92770 0.93723 0.94872 0.94057 0.92143 0.97613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.88 10.70 59.84 0.64 1.52 16 2 N -0.75 -7.55 5.72 -72.07 -0.41 -7.97 16 3 C 0.71 9.35 8.57 -86.91 -0.74 8.60 16 4 O -0.60 -9.73 16.34 5.29 0.09 -9.64 16 5 N -0.73 -9.14 5.53 -66.41 -0.37 -9.50 16 6 C 0.12 1.41 4.51 -5.20 -0.02 1.39 16 7 C 0.49 6.67 7.25 -10.99 -0.08 6.59 16 8 O -0.49 -8.55 8.75 5.55 0.05 -8.50 16 9 N -0.60 -7.22 2.96 -165.22 -0.49 -7.71 16 10 C 0.11 0.89 6.33 -3.71 -0.02 0.86 16 11 C -0.14 -1.11 6.09 -26.60 -0.16 -1.28 16 12 C -0.12 -1.11 5.88 -26.67 -0.16 -1.27 16 13 C -0.14 -1.79 4.73 -26.61 -0.13 -1.91 16 14 C 0.16 2.21 2.80 -67.60 -0.19 2.02 16 15 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 16 C -0.10 -1.76 2.12 -88.47 -0.19 -1.95 16 17 H 0.11 2.17 5.96 -52.07 -0.31 1.86 16 18 C -0.15 -2.91 6.33 -24.87 -0.16 -3.07 16 19 C 0.18 4.64 5.38 -3.04 -0.02 4.62 16 20 N -0.60 -16.23 3.39 -170.05 -0.58 -16.80 16 21 C -0.22 -6.31 10.27 -15.06 -0.15 -6.46 16 22 H 0.07 2.09 7.83 -52.49 -0.41 1.67 16 23 C -0.01 -0.35 5.48 -17.43 -0.10 -0.44 16 24 N -0.92 -28.19 10.34 55.49 0.57 -27.62 16 25 Si 0.91 22.90 29.56 -169.99 -5.02 17.87 16 26 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 27 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 28 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 29 C 0.14 3.13 5.66 -2.54 -0.01 3.12 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.40 3.22 8.84 -40.82 -0.36 2.86 16 34 H 0.41 5.21 7.45 -40.82 -0.30 4.91 16 35 H 0.09 0.95 8.02 -51.93 -0.42 0.54 16 36 H 0.09 1.01 7.60 -51.93 -0.39 0.62 16 37 H 0.08 0.60 5.94 -51.93 -0.31 0.29 16 38 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.08 1.01 6.50 -51.93 -0.34 0.67 16 44 H 0.08 1.23 5.67 -51.93 -0.29 0.93 16 45 H 0.05 0.95 6.14 -51.93 -0.32 0.63 16 46 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 47 H 0.04 1.27 7.25 -51.93 -0.38 0.90 16 48 H 0.03 0.93 7.65 -51.93 -0.40 0.53 16 49 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 50 H 0.06 1.40 5.41 -52.14 -0.28 1.11 16 51 H 0.01 0.14 5.36 -51.92 -0.28 -0.13 16 LS Contribution 381.37 15.07 5.75 5.75 Total: -1.00 -36.11 381.37 -10.06 -46.17 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -8.15 Total: 5.61 kcal Atomic # 6 Polarization: 13.84 SS G_CDS: -1.49 Total: 12.35 kcal Atomic # 7 Polarization: -68.33 SS G_CDS: -1.27 Total: -69.60 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: 0.14 Total: -18.14 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.11 -10.06 -46.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277285793.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.575 kcal (2) G-P(sol) polarization free energy of solvation -36.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds