Wall clock time and date at job start Tue Mar 31 2020 21:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34784 * 120.00152 * 2 1 4 4 O 1.21591 * 119.99854 * 0.02562 * 3 2 1 5 5 N 1.34776 * 120.00170 * 180.02562 * 3 2 1 6 6 C 1.46499 * 120.00059 * 179.97438 * 5 3 2 7 7 C 1.50696 * 109.47235 * 179.97438 * 6 5 3 8 8 O 1.21284 * 119.99837 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00132 * 179.97438 * 7 6 5 10 10 C 1.46928 * 120.62698 * 357.91946 * 9 7 6 11 11 C 1.53190 * 108.89407 * 233.55199 * 10 9 7 12 12 C 1.53069 * 109.29880 * 305.58613 * 11 10 9 13 13 C 1.53040 * 109.65860 * 61.14999 * 12 11 10 14 14 C 1.46924 * 120.63141 * 177.94063 * 9 7 6 15 15 H 1.08998 * 109.58689 * 246.30194 * 14 9 7 16 16 C 1.52997 * 109.58522 * 6.58778 * 14 9 7 17 17 H 1.09007 * 110.88667 * 305.07745 * 16 14 9 18 18 C 1.55164 * 111.00135 * 181.20422 * 16 14 9 19 19 C 1.54376 * 102.91619 * 206.45028 * 18 16 14 20 20 N 1.47022 * 107.28963 * 22.13931 * 19 18 16 21 21 C 1.36938 * 125.64703 * 181.05448 * 20 19 18 22 22 H 1.07992 * 119.99961 * 185.05366 * 21 20 19 23 23 C 1.38813 * 119.99568 * 5.05190 * 21 20 19 24 24 N 1.31609 * 120.00765 * 354.88282 * 23 21 20 25 25 Si 1.86807 * 119.99444 * 174.88056 * 23 21 20 26 26 H 1.48506 * 109.46889 * 95.00020 * 25 23 21 27 27 H 1.48503 * 109.47398 * 214.99627 * 25 23 21 28 28 H 1.48495 * 109.47549 * 335.00377 * 25 23 21 29 29 C 1.47416 * 108.70248 * 1.08953 * 20 19 18 30 30 H 1.09006 * 109.47180 * 299.99778 * 1 2 3 31 31 H 1.08996 * 109.47030 * 59.99924 * 1 2 3 32 32 H 1.09002 * 109.47204 * 180.02562 * 1 2 3 33 33 H 0.97001 * 120.00196 * 180.02562 * 2 1 3 34 34 H 0.96997 * 119.99647 * 0.02562 * 5 3 2 35 35 H 1.09002 * 109.46933 * 60.00009 * 6 5 3 36 36 H 1.08998 * 109.47146 * 300.00582 * 6 5 3 37 37 H 1.09000 * 109.58936 * 353.41946 * 10 9 7 38 38 H 1.09007 * 109.58081 * 113.69669 * 10 9 7 39 39 H 1.09004 * 109.49321 * 65.39552 * 11 10 9 40 40 H 1.08999 * 109.50045 * 185.48705 * 11 10 9 41 41 H 1.08999 * 109.34673 * 301.12747 * 12 11 10 42 42 H 1.08997 * 109.45242 * 181.24197 * 12 11 10 43 43 H 1.09000 * 109.49823 * 178.75214 * 13 12 11 44 44 H 1.08996 * 109.49996 * 58.65145 * 13 12 11 45 45 H 1.08993 * 110.71950 * 324.78565 * 18 16 14 46 46 H 1.08998 * 110.71957 * 88.06440 * 18 16 14 47 47 H 1.08997 * 109.84742 * 262.72930 * 19 18 16 48 48 H 1.09003 * 109.89509 * 141.57909 * 19 18 16 49 49 H 0.96999 * 120.00504 * 179.97438 * 24 23 21 50 50 H 1.09001 * 110.36559 * 217.03292 * 29 20 19 51 51 H 1.09007 * 110.45909 * 94.75812 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2203 0.0005 5 7 3.4867 1.1673 -0.0005 6 6 4.2192 2.4360 -0.0011 7 6 5.7008 2.1606 -0.0010 8 8 6.1050 1.0171 -0.0009 9 7 6.5766 3.1850 -0.0019 10 6 6.1027 4.5750 -0.0490 11 6 6.7894 5.2940 -1.2144 12 6 8.3068 5.1485 -1.0750 13 6 8.6887 3.6673 -1.1248 14 6 8.0234 2.9331 0.0436 15 1 8.4286 3.2997 0.9867 16 6 8.2864 1.4308 -0.0783 17 1 7.7383 0.8772 0.6842 18 6 9.8056 1.1244 -0.0036 19 6 9.9304 -0.1966 -0.7927 20 7 8.7608 -0.2885 -1.6787 21 6 8.4852 -1.3236 -2.5318 22 1 7.6412 -1.2604 -3.2026 23 6 9.2908 -2.4540 -2.5344 24 7 10.3762 -2.4904 -1.7910 25 14 8.8342 -3.9238 -3.5932 26 1 9.5531 -3.8420 -4.8900 27 1 9.2170 -5.1762 -2.8931 28 1 7.3696 -3.9214 -3.8383 29 6 7.9343 0.9186 -1.4972 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.9500 -0.8400 -0.0004 34 1 3.9716 0.3272 -0.0013 35 1 3.9562 3.0077 0.8889 36 1 3.9554 3.0074 -0.8910 37 1 5.0228 4.5881 -0.1969 38 1 6.3495 5.0770 0.8865 39 1 6.4682 4.8492 -2.1563 40 1 6.5201 6.3501 -1.1998 41 1 8.6244 5.5736 -0.1229 42 1 8.7987 5.6780 -1.8909 43 1 9.7714 3.5680 -1.0476 44 1 8.3495 3.2356 -2.0663 45 1 10.3825 1.9154 -0.4826 46 1 10.1211 0.9877 1.0307 47 1 9.9400 -1.0403 -0.1027 48 1 10.8450 -0.1895 -1.3856 49 1 10.9389 -3.2805 -1.7926 50 1 6.8756 0.6661 -1.5575 51 1 8.1876 1.6699 -2.2453 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277285793.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:49 Heat of formation + Delta-G solvation = -27.772794 kcal Electronic energy + Delta-G solvation = -31569.025686 eV Core-core repulsion = 27504.463338 eV Total energy + Delta-G solvation = -4064.562348 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.04869 -40.88534 -38.92556 -38.19855 -35.77064 -35.47295 -34.78793 -33.84172 -32.59752 -30.72414 -29.57679 -28.58087 -27.05100 -26.50718 -25.38105 -24.21643 -22.11909 -22.05338 -21.86742 -21.05742 -20.15653 -19.17744 -18.89848 -17.74632 -17.32802 -17.13522 -16.82073 -16.57340 -16.44012 -16.19660 -15.68539 -15.35428 -15.28639 -15.21714 -14.82439 -14.52961 -14.40038 -14.13385 -14.03830 -13.77769 -13.77167 -13.53967 -13.23641 -13.02292 -13.01812 -12.81537 -12.67523 -12.31393 -12.05075 -11.94718 -11.84519 -11.63298 -11.50407 -11.41853 -11.37836 -11.31063 -11.15646 -10.66502 -10.45682 -10.01311 -9.84412 -9.43863 -8.73008 -7.82599 -5.14788 1.41702 1.44294 1.53365 1.53719 1.59504 2.09016 2.14569 2.50508 3.32872 3.33718 3.39682 3.74298 3.89374 3.97636 4.00733 4.09014 4.21446 4.29790 4.33196 4.35565 4.37856 4.42095 4.47218 4.59067 4.68009 4.70482 4.81212 4.84346 4.90902 4.95549 5.01057 5.08632 5.13727 5.20878 5.28365 5.31390 5.33316 5.35463 5.44949 5.48935 5.55849 5.61360 5.71492 5.77555 5.86209 5.92115 6.24532 6.45343 6.97392 7.14314 7.22991 7.50205 7.85198 8.51606 9.28477 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.007853 B = 0.004434 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3564.814454 B = 6313.164834 C = 9267.957272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.744 5.744 3 C 0.702 3.298 4 O -0.631 6.631 5 N -0.734 5.734 6 C 0.128 3.872 7 C 0.489 3.511 8 O -0.536 6.536 9 N -0.599 5.599 10 C 0.100 3.900 11 C -0.132 4.132 12 C -0.113 4.113 13 C -0.138 4.138 14 C 0.168 3.832 15 H 0.094 0.906 16 C -0.078 4.078 17 H 0.087 0.913 18 C -0.136 4.136 19 C 0.189 3.811 20 N -0.626 5.626 21 C -0.235 4.235 22 H 0.072 0.928 23 C -0.069 4.069 24 N -0.952 5.952 25 Si 0.975 3.025 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.270 1.270 29 C 0.146 3.854 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.108 0.892 33 H 0.411 0.589 34 H 0.409 0.591 35 H 0.109 0.891 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.052 0.948 40 H 0.103 0.897 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.073 0.927 44 H 0.052 0.948 45 H 0.075 0.925 46 H 0.073 0.927 47 H 0.004 0.996 48 H -0.003 1.003 49 H 0.245 0.755 50 H 0.051 0.949 51 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.626 16.934 6.791 22.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.399 5.399 3 C 0.401 3.599 4 O -0.513 6.513 5 N -0.392 5.392 6 C 0.000 4.000 7 C 0.278 3.722 8 O -0.415 6.415 9 N -0.332 5.332 10 C -0.021 4.021 11 C -0.171 4.171 12 C -0.151 4.151 13 C -0.176 4.176 14 C 0.065 3.935 15 H 0.112 0.888 16 C -0.097 4.097 17 H 0.105 0.895 18 C -0.175 4.175 19 C 0.063 3.937 20 N -0.351 5.351 21 C -0.365 4.365 22 H 0.090 0.910 23 C -0.261 4.261 24 N -0.602 5.602 25 Si 0.804 3.196 26 H -0.214 1.214 27 H -0.218 1.218 28 H -0.195 1.195 29 C 0.022 3.978 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.127 0.873 33 H 0.246 0.754 34 H 0.246 0.754 35 H 0.127 0.873 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.113 0.887 39 H 0.071 0.929 40 H 0.121 0.879 41 H 0.099 0.901 42 H 0.088 0.912 43 H 0.092 0.908 44 H 0.070 0.930 45 H 0.093 0.907 46 H 0.092 0.908 47 H 0.022 0.978 48 H 0.015 0.985 49 H 0.054 0.946 50 H 0.068 0.932 51 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges -13.924 17.110 6.741 23.067 hybrid contribution 0.763 -2.119 -0.818 2.396 sum -13.161 14.992 5.922 20.809 Atomic orbital electron populations 1.21556 0.76859 1.04032 1.01501 1.44949 1.08619 1.06921 1.79406 1.16009 0.81470 0.84705 0.77679 1.90876 1.68631 1.31607 1.60156 1.44839 1.04550 1.10224 1.79592 1.20951 0.87441 0.86473 1.05096 1.20772 0.88850 0.85298 0.77326 1.90844 1.78447 1.23133 1.49057 1.48053 1.05696 1.07034 1.72443 1.22102 1.00241 0.79375 1.00419 1.21929 0.95318 1.01903 0.97902 1.21507 0.96179 0.94145 1.03220 1.22118 1.00675 0.96714 0.98050 1.21137 0.79450 0.93596 0.99314 0.88833 1.22619 0.93920 0.94712 0.98497 0.89511 1.22973 0.97176 0.97394 0.99941 1.20826 0.88562 0.93419 0.90849 1.44792 1.24308 1.19703 1.46346 1.19384 1.09704 0.94539 1.12831 0.90982 1.25630 0.97661 1.00839 1.01981 1.70211 1.15923 1.28889 1.45199 0.85104 0.77931 0.78944 0.77650 1.21352 1.21838 1.19481 1.22238 0.94573 0.87007 0.94006 0.92914 0.93212 0.87305 0.75355 0.75362 0.87296 0.88213 0.88230 0.88653 0.92907 0.87902 0.90110 0.91182 0.90807 0.92974 0.90698 0.90810 0.97789 0.98499 0.94595 0.93173 0.97341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.56 10.70 127.77 1.37 2.93 16 2 N -0.74 -14.25 5.72 -500.18 -2.86 -17.11 16 3 C 0.70 18.06 8.57 179.05 1.53 19.59 16 4 O -0.63 -20.03 16.34 -4.00 -0.07 -20.10 16 5 N -0.73 -17.93 5.53 -482.30 -2.67 -20.59 16 6 C 0.13 2.79 4.51 85.63 0.39 3.17 16 7 C 0.49 12.86 7.25 87.66 0.64 13.49 16 8 O -0.54 -19.02 8.75 -3.04 -0.03 -19.04 16 9 N -0.60 -12.98 2.96 -795.02 -2.35 -15.34 16 10 C 0.10 1.29 6.33 86.36 0.55 1.84 16 11 C -0.13 -1.68 6.09 30.68 0.19 -1.50 16 12 C -0.11 -1.71 5.88 30.63 0.18 -1.53 16 13 C -0.14 -3.22 4.73 30.67 0.14 -3.08 16 14 C 0.17 4.24 2.80 44.98 0.13 4.37 16 15 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 16 C -0.08 -2.86 2.12 -9.40 -0.02 -2.88 16 17 H 0.09 3.59 5.96 -6.28 -0.04 3.56 16 18 C -0.14 -5.30 6.33 31.80 0.20 -5.10 16 19 C 0.19 10.14 5.38 86.75 0.47 10.61 16 20 N -0.63 -35.14 3.39 -691.91 -2.35 -37.48 16 21 C -0.24 -14.28 10.27 84.03 0.86 -13.42 16 22 H 0.07 4.25 7.83 -2.91 -0.02 4.23 16 23 C -0.07 -4.16 5.48 84.86 0.47 -3.70 16 24 N -0.95 -60.69 10.34 21.65 0.22 -60.47 16 25 Si 0.98 48.27 29.56 68.60 2.03 50.30 16 26 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 27 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 28 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 29 C 0.15 6.56 5.66 86.86 0.49 7.05 16 30 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 31 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.41 6.20 8.84 -92.71 -0.82 5.38 16 34 H 0.41 10.46 7.45 -92.71 -0.69 9.77 16 35 H 0.11 2.01 8.02 -2.39 -0.02 1.99 16 36 H 0.10 2.03 7.60 -2.39 -0.02 2.01 16 37 H 0.10 1.03 5.94 -2.39 -0.01 1.01 16 38 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 39 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 40 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.07 1.78 6.50 -2.39 -0.02 1.76 16 44 H 0.05 1.54 5.67 -2.39 -0.01 1.52 16 45 H 0.07 2.59 6.14 -2.39 -0.01 2.58 16 46 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 47 H 0.00 0.23 7.25 -2.39 -0.02 0.22 16 48 H 0.00 -0.19 7.65 -2.39 -0.02 -0.21 16 49 H 0.24 15.08 8.31 -92.71 -0.77 14.31 16 50 H 0.05 2.40 5.41 -7.41 -0.04 2.36 16 51 H 0.01 0.41 5.36 -2.38 -0.01 0.40 16 Total: -1.00 -83.37 381.37 -1.09 -84.46 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: -0.60 Total: 23.51 kcal Atomic # 6 Polarization: 24.29 SS G_CDS: 7.58 Total: 31.87 kcal Atomic # 7 Polarization: -140.98 SS G_CDS: -10.01 Total: -150.99 kcal Atomic # 8 Polarization: -39.05 SS G_CDS: -0.09 Total: -39.14 kcal Atomic # 14 Polarization: 48.27 SS G_CDS: 2.03 Total: 50.30 kcal Total: -83.37 -1.09 -84.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277285793.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.687 kcal (2) G-P(sol) polarization free energy of solvation -83.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds