Wall clock time and date at job start Tue Mar 31 2020 21:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.34773 * 120.00159 * 2 1 4 4 O 1.21595 * 119.99887 * 0.02562 * 3 2 1 5 5 N 1.34771 * 120.00452 * 180.02562 * 3 2 1 6 6 C 1.46504 * 120.00474 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.47388 * 179.97438 * 6 5 3 8 8 C 1.50696 * 109.47162 * 179.97438 * 7 6 5 9 9 O 1.21287 * 120.00032 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00217 * 180.02562 * 8 7 6 11 11 C 1.46945 * 120.70463 * 359.97438 * 10 8 7 12 12 C 1.53193 * 109.01770 * 234.20457 * 11 10 8 13 13 C 1.53159 * 109.27489 * 304.72689 * 12 11 10 14 14 C 1.52232 * 109.66359 * 60.17150 * 13 12 11 15 15 C 1.54491 * 110.28869 * 178.02863 * 14 13 12 16 16 C 1.55030 * 101.52627 * 276.20355 * 15 14 13 17 17 N 1.47484 * 104.90607 * 323.65571 * 16 15 14 18 18 C 1.36932 * 125.66151 * 204.02650 * 17 16 15 19 19 H 1.08004 * 120.00318 * 179.97438 * 18 17 16 20 20 C 1.38812 * 120.00229 * 359.97438 * 18 17 16 21 21 N 1.31624 * 119.99801 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00452 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46943 * 89.99688 * 22 20 18 24 24 H 1.48494 * 109.47226 * 209.99809 * 22 20 18 25 25 H 1.48507 * 109.46883 * 329.99867 * 22 20 18 26 26 C 1.47176 * 108.67537 * 24.01223 * 17 16 15 27 27 C 1.47300 * 120.85238 * 180.09002 * 10 8 7 28 28 H 1.08999 * 109.47537 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47285 * 299.99516 * 1 2 3 30 30 H 1.09003 * 109.47747 * 59.99337 * 1 2 3 31 31 H 0.96996 * 120.00398 * 180.02562 * 2 1 3 32 32 H 0.97004 * 120.00308 * 0.02562 * 5 3 2 33 33 H 1.09001 * 109.47360 * 59.99471 * 6 5 3 34 34 H 1.09007 * 109.46604 * 299.99688 * 6 5 3 35 35 H 1.09001 * 109.47207 * 59.99494 * 7 6 5 36 36 H 1.08994 * 109.47188 * 299.99676 * 7 6 5 37 37 H 1.09002 * 109.56080 * 114.31488 * 11 10 8 38 38 H 1.09000 * 109.56043 * 354.09505 * 11 10 8 39 39 H 1.09000 * 109.50614 * 64.67058 * 12 11 10 40 40 H 1.08997 * 109.50113 * 184.74618 * 12 11 10 41 41 H 1.08996 * 109.44247 * 180.23156 * 13 12 11 42 42 H 1.09006 * 109.44082 * 300.15881 * 13 12 11 43 43 H 1.08999 * 111.01611 * 34.26693 * 15 14 13 44 44 H 1.08999 * 111.01554 * 158.14556 * 15 14 13 45 45 H 1.08995 * 110.35211 * 204.79754 * 16 15 14 46 46 H 1.08998 * 110.44394 * 82.55972 * 16 15 14 47 47 H 0.97002 * 120.00109 * 180.02562 * 21 20 18 48 48 H 1.08997 * 109.90972 * 239.10263 * 26 17 16 49 49 H 1.09000 * 110.06813 * 117.92467 * 26 17 16 50 50 H 1.08998 * 109.53552 * 7.69115 * 27 10 8 51 51 H 1.08998 * 109.66187 * 247.40634 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5308 2.2202 0.0005 5 7 3.4865 1.1672 -0.0005 6 6 4.2191 2.4360 0.0000 7 6 5.7233 2.1564 -0.0001 8 6 6.4768 3.4615 -0.0001 9 8 5.8703 4.5119 -0.0005 10 7 7.8245 3.4615 -0.0008 11 6 8.5749 2.1981 -0.0008 12 6 9.5587 2.2018 1.1734 13 6 10.4492 3.4446 1.0832 14 6 9.5871 4.6979 1.1440 15 6 10.4752 5.9614 1.1037 16 6 10.8745 6.1071 2.5946 17 7 9.6789 5.6889 3.3501 18 6 9.3714 6.0653 4.6303 19 1 8.4673 5.7032 5.0973 20 6 10.2215 6.9124 5.3279 21 7 11.3235 7.3533 4.7589 22 14 9.8017 7.4265 7.0740 23 1 10.3890 6.4545 8.0309 24 1 10.3561 8.7784 7.3387 25 1 8.3263 7.4551 7.2404 26 6 8.8709 4.8001 2.4996 27 6 8.5799 4.7261 0.0012 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3635 0.5139 -0.8899 31 1 1.9500 -0.8400 -0.0004 32 1 3.9716 0.3272 -0.0013 33 1 3.9561 3.0070 0.8905 34 1 3.9554 3.0081 -0.8896 35 1 5.9866 1.5852 -0.8903 36 1 5.9866 1.5845 0.8896 37 1 9.1245 2.1001 -0.9371 38 1 7.8829 1.3627 0.1053 39 1 9.0049 2.2182 2.1121 40 1 10.1781 1.3058 1.1320 41 1 11.1531 3.4478 1.9153 42 1 10.9996 3.4290 0.1424 43 1 11.3532 5.8023 0.4777 44 1 9.9073 6.8277 0.7647 45 1 11.1225 7.1440 2.8211 46 1 11.7173 5.4567 2.8284 47 1 11.9178 7.9450 5.2465 48 1 7.8752 5.2217 2.3625 49 1 8.7962 3.8127 2.9552 50 1 7.8929 5.5608 0.1405 51 1 9.1061 4.8405 -0.9465 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281086187.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:37 Heat of formation + Delta-G solvation = -37.209423 kcal Electronic energy + Delta-G solvation = -30315.335034 eV Core-core repulsion = 26250.363483 eV Total energy + Delta-G solvation = -4064.971551 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.55359 -40.06682 -38.50742 -35.90563 -35.53843 -34.73268 -33.12279 -31.89535 -31.32250 -30.05580 -28.45747 -27.03777 -25.64236 -25.53250 -24.02385 -22.93377 -22.03102 -21.24990 -20.28219 -19.47516 -18.60959 -18.02327 -17.38523 -16.83150 -16.27534 -16.24202 -15.69687 -15.48910 -15.04494 -14.67405 -14.59064 -14.42758 -14.26721 -13.96573 -13.69665 -13.31928 -13.28625 -13.11259 -12.86049 -12.56950 -12.53483 -12.15783 -12.06595 -11.82200 -11.68166 -11.53901 -11.08725 -10.91448 -10.89183 -10.82788 -10.64934 -10.50355 -10.12600 -10.10671 -9.90043 -9.77260 -9.65320 -9.59086 -9.41294 -9.12261 -8.60801 -8.47838 -6.77046 -5.61099 -3.01580 2.35477 2.63729 2.98385 3.04307 3.42741 3.48129 3.50363 3.94883 4.45291 4.50938 4.55122 4.74084 4.79695 4.84412 4.98411 5.04460 5.11410 5.20083 5.20926 5.28511 5.38374 5.46386 5.53988 5.55738 5.69031 5.71815 5.80935 5.85536 5.87804 5.93797 6.00300 6.10331 6.13107 6.19365 6.31098 6.36157 6.46954 6.50051 6.57342 6.64602 6.72484 6.86653 6.99612 7.43072 7.54687 7.67642 7.70207 7.89886 8.19244 8.35023 8.40866 9.27218 9.88146 10.53665 11.42952 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.012866 B = 0.002532 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.778383 B =11056.959552 C =12462.876520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.753 5.753 3 C 0.701 3.299 4 O -0.584 6.584 5 N -0.747 5.747 6 C 0.152 3.848 7 C -0.151 4.151 8 C 0.519 3.481 9 O -0.534 6.534 10 N -0.607 5.607 11 C 0.109 3.891 12 C -0.138 4.138 13 C -0.099 4.099 14 C -0.084 4.084 15 C -0.135 4.135 16 C 0.155 3.845 17 N -0.603 5.603 18 C -0.218 4.218 19 H 0.075 0.925 20 C -0.013 4.013 21 N -0.923 5.923 22 Si 0.913 3.087 23 H -0.290 1.290 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.152 3.848 27 C 0.130 3.870 28 H 0.074 0.926 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.396 0.604 32 H 0.394 0.606 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.062 0.938 45 H 0.104 0.896 46 H 0.011 0.989 47 H 0.251 0.749 48 H 0.022 0.978 49 H 0.020 0.980 50 H 0.093 0.907 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.391 -20.264 -14.450 26.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.409 5.409 3 C 0.400 3.600 4 O -0.461 6.461 5 N -0.403 5.403 6 C 0.028 3.972 7 C -0.192 4.192 8 C 0.306 3.694 9 O -0.411 6.411 10 N -0.341 5.341 11 C -0.015 4.015 12 C -0.176 4.176 13 C -0.137 4.137 14 C -0.086 4.086 15 C -0.174 4.174 16 C 0.031 3.969 17 N -0.329 5.329 18 C -0.347 4.347 19 H 0.093 0.907 20 C -0.208 4.208 21 N -0.573 5.573 22 Si 0.744 3.256 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.026 3.974 27 C 0.008 3.992 28 H 0.093 0.907 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.229 0.771 32 H 0.228 0.772 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.086 0.914 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.122 0.878 46 H 0.029 0.971 47 H 0.062 0.938 48 H 0.040 0.960 49 H 0.038 0.962 50 H 0.112 0.888 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.246 -18.549 -14.277 25.552 hybrid contribution 0.458 -0.782 0.992 1.344 sum -9.787 -19.331 -13.285 25.416 Atomic orbital electron populations 1.21389 0.78118 1.01881 1.02410 1.44910 1.07803 1.07065 1.81120 1.15941 0.81720 0.84312 0.78004 1.90976 1.67764 1.30281 1.57110 1.45085 1.04773 1.09774 1.80654 1.20909 0.87969 0.84060 1.04260 1.21817 0.95318 0.97269 1.04775 1.20193 0.82041 0.90756 0.76437 1.90761 1.67417 1.33437 1.49447 1.48190 1.05130 1.07820 1.72934 1.21745 0.94986 0.85562 0.99158 1.21999 0.98039 0.98802 0.98780 1.21327 0.97478 0.92830 1.02030 1.21349 0.95522 0.96197 0.95486 1.22993 0.97836 0.95438 1.01129 1.21904 0.88017 1.02719 0.84297 1.44548 1.22489 1.53716 1.12187 1.19072 1.04899 1.22752 0.87933 0.90697 1.24765 0.97020 1.00303 0.98704 1.69801 1.13306 1.38171 1.35976 0.86089 0.77630 0.77726 0.84198 1.21742 1.21666 1.20707 1.21245 0.93818 0.93626 0.88725 1.21633 0.93864 0.86006 0.97713 0.90714 0.92316 0.92368 0.77073 0.77227 0.90400 0.90581 0.88425 0.88172 0.91395 0.90228 0.90791 0.90989 0.90804 0.92377 0.92198 0.91959 0.87796 0.97105 0.93835 0.96046 0.96201 0.88837 0.91783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.66 10.70 59.84 0.64 1.30 16 2 N -0.75 -5.28 5.72 -72.08 -0.41 -5.69 16 3 C 0.70 7.84 8.57 -86.93 -0.74 7.10 16 4 O -0.58 -9.62 16.34 5.28 0.09 -9.54 16 5 N -0.75 -6.32 5.56 -65.22 -0.36 -6.68 16 6 C 0.15 1.67 4.96 -4.04 -0.02 1.65 16 7 C -0.15 -1.30 4.16 -27.89 -0.12 -1.42 16 8 C 0.52 6.98 7.70 -10.99 -0.08 6.90 16 9 O -0.53 -9.65 15.43 5.55 0.09 -9.57 16 10 N -0.61 -7.64 2.87 -172.95 -0.50 -8.14 16 11 C 0.11 0.97 6.32 -3.70 -0.02 0.95 16 12 C -0.14 -1.51 5.90 -26.55 -0.16 -1.67 16 13 C -0.10 -1.38 4.58 -27.04 -0.12 -1.51 16 14 C -0.08 -1.41 0.53 -154.10 -0.08 -1.49 16 15 C -0.13 -2.50 5.99 -24.88 -0.15 -2.65 16 16 C 0.16 3.75 5.57 -2.43 -0.01 3.74 16 17 N -0.60 -15.68 3.40 -170.24 -0.58 -16.26 16 18 C -0.22 -6.24 10.28 -15.06 -0.15 -6.39 16 19 H 0.08 2.10 7.83 -52.48 -0.41 1.69 16 20 C -0.01 -0.37 5.49 -17.43 -0.10 -0.46 16 21 N -0.92 -27.22 10.09 55.49 0.56 -26.66 16 22 Si 0.91 22.61 29.55 -169.99 -5.02 17.58 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 26 C 0.15 3.24 6.14 -3.33 -0.02 3.22 16 27 C 0.13 1.93 5.01 -3.93 -0.02 1.91 16 28 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.40 1.35 8.84 -40.82 -0.36 0.99 16 32 H 0.39 1.78 8.49 -40.82 -0.35 1.43 16 33 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 34 H 0.08 0.98 8.10 -51.92 -0.42 0.56 16 35 H 0.10 0.55 7.93 -51.93 -0.41 0.14 16 36 H 0.10 0.69 7.71 -51.93 -0.40 0.29 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.49 5.94 -51.93 -0.31 0.18 16 39 H 0.07 0.96 6.34 -51.93 -0.33 0.63 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 1.21 7.52 -51.93 -0.39 0.82 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.06 0.96 8.01 -51.93 -0.42 0.55 16 44 H 0.06 1.17 8.02 -51.93 -0.42 0.76 16 45 H 0.10 2.86 5.88 -51.93 -0.31 2.56 16 46 H 0.01 0.28 7.78 -51.93 -0.40 -0.13 16 47 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 48 H 0.02 0.50 7.66 -51.93 -0.40 0.10 16 49 H 0.02 0.43 6.01 -51.93 -0.31 0.11 16 50 H 0.09 1.65 6.84 -51.93 -0.36 1.29 16 51 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 394.49 15.07 5.94 5.94 Total: -1.00 -37.68 394.49 -9.86 -47.54 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -8.50 Total: 0.27 kcal Atomic # 6 Polarization: 12.35 SS G_CDS: -1.16 Total: 11.18 kcal Atomic # 7 Polarization: -62.13 SS G_CDS: -1.29 Total: -63.42 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: 0.17 Total: -19.10 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -37.68 -9.86 -47.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281086187.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.331 kcal (2) G-P(sol) polarization free energy of solvation -37.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds