Wall clock time and date at job start Tue Mar 31 2020 21:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.34773 * 120.00159 * 2 1 4 4 O 1.21595 * 119.99887 * 0.02562 * 3 2 1 5 5 N 1.34771 * 120.00452 * 180.02562 * 3 2 1 6 6 C 1.46504 * 120.00474 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.47388 * 179.97438 * 6 5 3 8 8 C 1.50696 * 109.47162 * 179.97438 * 7 6 5 9 9 O 1.21287 * 120.00032 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00217 * 180.02562 * 8 7 6 11 11 C 1.46945 * 120.70463 * 359.97438 * 10 8 7 12 12 C 1.53193 * 109.01770 * 234.20457 * 11 10 8 13 13 C 1.53159 * 109.27489 * 304.72689 * 12 11 10 14 14 C 1.52232 * 109.66359 * 60.17150 * 13 12 11 15 15 C 1.54491 * 110.28869 * 178.02863 * 14 13 12 16 16 C 1.55030 * 101.52627 * 276.20355 * 15 14 13 17 17 N 1.47484 * 104.90607 * 323.65571 * 16 15 14 18 18 C 1.36932 * 125.66151 * 204.02650 * 17 16 15 19 19 H 1.08004 * 120.00318 * 179.97438 * 18 17 16 20 20 C 1.38812 * 120.00229 * 359.97438 * 18 17 16 21 21 N 1.31624 * 119.99801 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00452 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46943 * 89.99688 * 22 20 18 24 24 H 1.48494 * 109.47226 * 209.99809 * 22 20 18 25 25 H 1.48507 * 109.46883 * 329.99867 * 22 20 18 26 26 C 1.47176 * 108.67537 * 24.01223 * 17 16 15 27 27 C 1.47300 * 120.85238 * 180.09002 * 10 8 7 28 28 H 1.08999 * 109.47537 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47285 * 299.99516 * 1 2 3 30 30 H 1.09003 * 109.47747 * 59.99337 * 1 2 3 31 31 H 0.96996 * 120.00398 * 180.02562 * 2 1 3 32 32 H 0.97004 * 120.00308 * 0.02562 * 5 3 2 33 33 H 1.09001 * 109.47360 * 59.99471 * 6 5 3 34 34 H 1.09007 * 109.46604 * 299.99688 * 6 5 3 35 35 H 1.09001 * 109.47207 * 59.99494 * 7 6 5 36 36 H 1.08994 * 109.47188 * 299.99676 * 7 6 5 37 37 H 1.09002 * 109.56080 * 114.31488 * 11 10 8 38 38 H 1.09000 * 109.56043 * 354.09505 * 11 10 8 39 39 H 1.09000 * 109.50614 * 64.67058 * 12 11 10 40 40 H 1.08997 * 109.50113 * 184.74618 * 12 11 10 41 41 H 1.08996 * 109.44247 * 180.23156 * 13 12 11 42 42 H 1.09006 * 109.44082 * 300.15881 * 13 12 11 43 43 H 1.08999 * 111.01611 * 34.26693 * 15 14 13 44 44 H 1.08999 * 111.01554 * 158.14556 * 15 14 13 45 45 H 1.08995 * 110.35211 * 204.79754 * 16 15 14 46 46 H 1.08998 * 110.44394 * 82.55972 * 16 15 14 47 47 H 0.97002 * 120.00109 * 180.02562 * 21 20 18 48 48 H 1.08997 * 109.90972 * 239.10263 * 26 17 16 49 49 H 1.09000 * 110.06813 * 117.92467 * 26 17 16 50 50 H 1.08998 * 109.53552 * 7.69115 * 27 10 8 51 51 H 1.08998 * 109.66187 * 247.40634 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5308 2.2202 0.0005 5 7 3.4865 1.1672 -0.0005 6 6 4.2191 2.4360 0.0000 7 6 5.7233 2.1564 -0.0001 8 6 6.4768 3.4615 -0.0001 9 8 5.8703 4.5119 -0.0005 10 7 7.8245 3.4615 -0.0008 11 6 8.5749 2.1981 -0.0008 12 6 9.5587 2.2018 1.1734 13 6 10.4492 3.4446 1.0832 14 6 9.5871 4.6979 1.1440 15 6 10.4752 5.9614 1.1037 16 6 10.8745 6.1071 2.5946 17 7 9.6789 5.6889 3.3501 18 6 9.3714 6.0653 4.6303 19 1 8.4673 5.7032 5.0973 20 6 10.2215 6.9124 5.3279 21 7 11.3235 7.3533 4.7589 22 14 9.8017 7.4265 7.0740 23 1 10.3890 6.4545 8.0309 24 1 10.3561 8.7784 7.3387 25 1 8.3263 7.4551 7.2404 26 6 8.8709 4.8001 2.4996 27 6 8.5799 4.7261 0.0012 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3635 0.5139 -0.8899 31 1 1.9500 -0.8400 -0.0004 32 1 3.9716 0.3272 -0.0013 33 1 3.9561 3.0070 0.8905 34 1 3.9554 3.0081 -0.8896 35 1 5.9866 1.5852 -0.8903 36 1 5.9866 1.5845 0.8896 37 1 9.1245 2.1001 -0.9371 38 1 7.8829 1.3627 0.1053 39 1 9.0049 2.2182 2.1121 40 1 10.1781 1.3058 1.1320 41 1 11.1531 3.4478 1.9153 42 1 10.9996 3.4290 0.1424 43 1 11.3532 5.8023 0.4777 44 1 9.9073 6.8277 0.7647 45 1 11.1225 7.1440 2.8211 46 1 11.7173 5.4567 2.8284 47 1 11.9178 7.9450 5.2465 48 1 7.8752 5.2217 2.3625 49 1 8.7962 3.8127 2.9552 50 1 7.8929 5.5608 0.1405 51 1 9.1061 4.8405 -0.9465 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281086187.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:35 Heat of formation + Delta-G solvation = -67.165237 kcal Electronic energy + Delta-G solvation = -30316.634016 eV Core-core repulsion = 26250.363483 eV Total energy + Delta-G solvation = -4066.270532 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.64721 -40.97083 -39.83370 -37.29237 -36.37354 -35.57411 -34.84622 -33.08463 -32.40597 -31.61780 -30.06715 -27.85049 -27.38269 -26.46780 -25.50005 -23.97435 -23.16863 -22.12296 -22.06970 -20.51729 -19.58711 -19.14774 -18.89231 -18.26380 -17.15393 -17.08707 -16.94436 -16.65892 -16.42744 -16.27267 -15.76020 -15.40162 -15.18622 -15.14061 -15.01052 -14.55791 -14.32082 -14.12153 -14.02159 -13.85972 -13.70790 -13.40799 -13.27418 -13.02388 -12.92309 -12.79671 -12.70981 -12.47425 -12.25781 -12.13627 -12.07641 -11.99901 -11.70031 -11.58315 -11.52569 -11.29520 -11.12404 -10.76375 -10.72851 -10.45986 -9.81062 -9.54321 -8.89657 -7.80641 -5.24210 1.41437 1.43821 1.52717 1.57489 1.66147 2.11591 2.15123 2.46065 3.27641 3.31989 3.60204 3.63742 3.66471 3.82023 3.95329 3.98060 4.08159 4.16682 4.24992 4.33949 4.45894 4.47260 4.60482 4.62587 4.65798 4.66546 4.76296 4.80430 4.84046 4.88080 4.90659 4.95380 4.99595 5.01279 5.06380 5.19227 5.25306 5.39739 5.40311 5.49006 5.50585 5.54032 5.57118 5.66642 5.81816 6.01212 6.29276 6.48188 7.09046 7.12708 7.20403 7.58065 7.76426 8.40559 9.20812 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.012866 B = 0.002532 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.778383 B =11056.959552 C =12462.876520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.734 5.734 3 C 0.690 3.310 4 O -0.646 6.646 5 N -0.726 5.726 6 C 0.159 3.841 7 C -0.133 4.133 8 C 0.508 3.492 9 O -0.595 6.595 10 N -0.606 5.606 11 C 0.106 3.894 12 C -0.134 4.134 13 C -0.097 4.097 14 C -0.069 4.069 15 C -0.123 4.123 16 C 0.159 3.841 17 N -0.626 5.626 18 C -0.241 4.241 19 H 0.070 0.930 20 C -0.065 4.065 21 N -0.946 5.946 22 Si 0.979 3.021 23 H -0.282 1.282 24 H -0.290 1.290 25 H -0.276 1.276 26 C 0.154 3.846 27 C 0.136 3.864 28 H 0.117 0.883 29 H 0.041 0.959 30 H 0.044 0.956 31 H 0.418 0.582 32 H 0.419 0.581 33 H 0.037 0.963 34 H 0.050 0.950 35 H 0.145 0.855 36 H 0.129 0.871 37 H 0.099 0.901 38 H 0.120 0.880 39 H 0.048 0.952 40 H 0.106 0.894 41 H 0.043 0.957 42 H 0.091 0.909 43 H 0.095 0.905 44 H 0.053 0.947 45 H 0.066 0.934 46 H -0.006 1.006 47 H 0.248 0.752 48 H -0.008 1.008 49 H 0.023 0.977 50 H 0.055 0.945 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.824 -24.550 -16.169 30.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.391 5.391 3 C 0.390 3.610 4 O -0.528 6.528 5 N -0.383 5.383 6 C 0.034 3.966 7 C -0.172 4.172 8 C 0.297 3.703 9 O -0.476 6.476 10 N -0.338 5.338 11 C -0.015 4.015 12 C -0.172 4.172 13 C -0.135 4.135 14 C -0.071 4.071 15 C -0.162 4.162 16 C 0.034 3.966 17 N -0.352 5.352 18 C -0.371 4.371 19 H 0.088 0.912 20 C -0.258 4.258 21 N -0.595 5.595 22 Si 0.807 3.193 23 H -0.209 1.209 24 H -0.216 1.216 25 H -0.201 1.201 26 C 0.029 3.971 27 C 0.013 3.987 28 H 0.135 0.865 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.255 0.745 32 H 0.257 0.743 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.163 0.837 36 H 0.147 0.853 37 H 0.118 0.882 38 H 0.138 0.862 39 H 0.066 0.934 40 H 0.124 0.876 41 H 0.062 0.938 42 H 0.109 0.891 43 H 0.113 0.887 44 H 0.072 0.928 45 H 0.084 0.916 46 H 0.012 0.988 47 H 0.058 0.942 48 H 0.010 0.990 49 H 0.041 0.959 50 H 0.073 0.927 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.638 -22.968 -16.014 29.612 hybrid contribution 0.269 0.543 1.561 1.674 sum -9.370 -22.425 -14.453 28.276 Atomic orbital electron populations 1.21533 0.77527 1.04174 1.00984 1.44773 1.08182 1.06679 1.79442 1.16311 0.82403 0.84532 0.77785 1.90939 1.69147 1.32847 1.59853 1.44736 1.03933 1.10001 1.79674 1.20599 0.90166 0.84641 1.01216 1.21770 0.92185 0.94986 1.08290 1.21092 0.82340 0.91744 0.75125 1.90746 1.68670 1.36028 1.52110 1.48311 1.05095 1.08349 1.72082 1.22121 0.95315 0.84589 0.99511 1.21989 0.98173 0.98436 0.98596 1.21332 0.97123 0.92561 1.02477 1.21268 0.95578 0.96931 0.93298 1.22862 0.99461 0.96449 0.97426 1.21682 0.87253 0.99820 0.87830 1.44868 1.23543 1.54671 1.12129 1.19370 1.04943 1.23208 0.89529 0.91240 1.25601 0.97090 1.00439 1.02645 1.70058 1.13940 1.38410 1.37127 0.85078 0.77549 0.77164 0.79547 1.20875 1.21584 1.20113 1.21344 0.92445 0.92378 0.90969 1.21367 0.92882 0.86548 0.97918 0.86463 0.94014 0.93669 0.74524 0.74324 0.94405 0.93137 0.83688 0.85284 0.88246 0.86245 0.93372 0.87555 0.93814 0.89082 0.88698 0.92801 0.91631 0.98830 0.94246 0.99039 0.95880 0.92668 0.88728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.13 10.70 127.77 1.37 2.50 16 2 N -0.73 -8.81 5.72 -500.21 -2.86 -11.67 16 3 C 0.69 15.01 8.57 179.06 1.53 16.54 16 4 O -0.65 -22.22 16.34 -4.01 -0.07 -22.29 16 5 N -0.73 -10.88 5.56 -478.52 -2.66 -13.54 16 6 C 0.16 3.45 4.96 86.38 0.43 3.87 16 7 C -0.13 -1.83 4.16 29.85 0.12 -1.71 16 8 C 0.51 13.05 7.70 87.66 0.68 13.72 16 9 O -0.59 -22.52 15.43 -3.05 -0.05 -22.57 16 10 N -0.61 -13.65 2.87 -819.48 -2.35 -16.00 16 11 C 0.11 1.30 6.32 86.36 0.55 1.84 16 12 C -0.13 -2.38 5.90 30.71 0.18 -2.20 16 13 C -0.10 -2.45 4.58 30.39 0.14 -2.31 16 14 C -0.07 -2.28 0.53 -51.92 -0.03 -2.30 16 15 C -0.12 -4.58 5.99 31.80 0.19 -4.39 16 16 C 0.16 8.02 5.57 86.89 0.48 8.50 16 17 N -0.63 -34.11 3.40 -692.52 -2.36 -36.47 16 18 C -0.24 -14.42 10.28 84.03 0.86 -13.55 16 19 H 0.07 4.09 7.83 -2.91 -0.02 4.06 16 20 C -0.07 -3.86 5.49 84.86 0.47 -3.39 16 21 N -0.95 -57.92 10.09 21.65 0.22 -57.70 16 22 Si 0.98 47.74 29.55 68.60 2.03 49.76 16 23 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 24 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 25 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 26 C 0.15 6.81 6.14 86.47 0.53 7.34 16 27 C 0.14 3.89 5.01 86.02 0.43 4.32 16 28 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 29 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.42 1.37 8.84 -92.71 -0.82 0.55 16 32 H 0.42 2.05 8.49 -92.70 -0.79 1.26 16 33 H 0.04 1.12 8.10 -2.39 -0.02 1.10 16 34 H 0.05 1.36 8.10 -2.38 -0.02 1.34 16 35 H 0.15 0.73 7.93 -2.39 -0.02 0.71 16 36 H 0.13 1.14 7.71 -2.39 -0.02 1.12 16 37 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.12 0.59 5.94 -2.39 -0.01 0.57 16 39 H 0.05 1.12 6.34 -2.39 -0.02 1.10 16 40 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.04 1.38 7.52 -2.39 -0.02 1.36 16 42 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 43 H 0.09 2.87 8.01 -2.39 -0.02 2.85 16 44 H 0.05 2.08 8.02 -2.39 -0.02 2.06 16 45 H 0.07 3.82 5.88 -2.39 -0.01 3.80 16 46 H -0.01 -0.33 7.78 -2.39 -0.02 -0.35 16 47 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 48 H -0.01 -0.42 7.66 -2.39 -0.02 -0.44 16 49 H 0.02 1.01 6.01 -2.39 -0.01 1.00 16 50 H 0.05 2.03 6.84 -2.39 -0.02 2.01 16 51 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -93.85 394.49 -0.82 -94.66 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -0.66 Total: 7.02 kcal Atomic # 6 Polarization: 20.85 SS G_CDS: 7.93 Total: 28.78 kcal Atomic # 7 Polarization: -125.37 SS G_CDS: -10.01 Total: -135.37 kcal Atomic # 8 Polarization: -44.74 SS G_CDS: -0.11 Total: -44.85 kcal Atomic # 14 Polarization: 47.74 SS G_CDS: 2.03 Total: 49.76 kcal Total: -93.85 -0.82 -94.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281086187.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.498 kcal (2) G-P(sol) polarization free energy of solvation -93.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds