Wall clock time and date at job start Tue Mar 31 2020 21:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34777 * 119.99873 * 2 1 4 4 O 1.21592 * 119.99797 * 359.97438 * 3 2 1 5 5 N 1.34774 * 119.99902 * 179.97438 * 3 2 1 6 6 C 1.46499 * 119.99966 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.47337 * 180.02562 * 6 5 3 8 8 C 1.50696 * 109.46997 * 180.02562 * 7 6 5 9 9 O 1.21279 * 120.00443 * 359.97438 * 8 7 6 10 10 N 1.34784 * 119.99627 * 180.02562 * 8 7 6 11 11 C 1.46507 * 119.99767 * 179.97438 * 10 8 7 12 12 H 1.08996 * 109.70971 * 35.59452 * 11 10 8 13 13 C 1.53293 * 109.71196 * 274.99577 * 11 10 8 14 14 C 1.52623 * 108.50464 * 176.52920 * 13 11 10 15 15 C 1.52983 * 110.93190 * 62.20419 * 14 13 11 16 16 H 1.09002 * 112.43175 * 73.38837 * 15 14 13 17 17 C 1.55847 * 106.36987 * 198.11306 * 15 14 13 18 18 N 1.47620 * 104.47028 * 77.05731 * 17 15 14 19 19 C 1.36938 * 125.72807 * 204.86585 * 18 17 15 20 20 H 1.07993 * 120.00205 * 179.97438 * 19 18 17 21 21 C 1.38817 * 119.99852 * 0.02562 * 19 18 17 22 22 N 1.31620 * 119.99890 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00046 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47125 * 89.99505 * 23 21 19 25 25 H 1.48495 * 109.46883 * 209.99581 * 23 21 19 26 26 H 1.48501 * 109.46816 * 329.99590 * 23 21 19 27 27 C 1.47430 * 108.54865 * 24.87213 * 18 17 15 28 28 C 1.53373 * 106.51235 * 359.32827 * 27 18 17 29 29 H 1.09000 * 108.95595 * 91.97355 * 28 27 18 30 30 C 1.50891 * 113.07359 * 212.47370 * 28 27 18 31 31 H 1.09000 * 109.47212 * 300.00355 * 1 2 3 32 32 H 1.09001 * 109.46577 * 60.00430 * 1 2 3 33 33 H 1.09001 * 109.47060 * 179.97438 * 1 2 3 34 34 H 0.96995 * 120.00050 * 179.72114 * 2 1 3 35 35 H 0.96999 * 120.00050 * 0.02562 * 5 3 2 36 36 H 1.09005 * 109.47136 * 300.00071 * 6 5 3 37 37 H 1.08996 * 109.47174 * 59.99413 * 6 5 3 38 38 H 1.09000 * 109.46757 * 299.99461 * 7 6 5 39 39 H 1.09002 * 109.47113 * 59.99591 * 7 6 5 40 40 H 0.96999 * 120.00048 * 359.97438 * 10 8 7 41 41 H 1.09000 * 109.63108 * 296.23298 * 13 11 10 42 42 H 1.08997 * 109.63689 * 56.62465 * 13 11 10 43 43 H 1.09003 * 109.18905 * 182.57997 * 14 13 11 44 44 H 1.09004 * 109.18801 * 301.88052 * 14 13 11 45 45 H 1.08994 * 110.43300 * 195.80648 * 17 15 14 46 46 H 1.09001 * 110.43257 * 318.31120 * 17 15 14 47 47 H 0.96993 * 120.00109 * 180.02562 * 22 21 19 48 48 H 1.09002 * 110.04634 * 240.06875 * 27 18 17 49 49 H 1.08998 * 110.09331 * 118.61705 * 27 18 17 50 50 H 1.09000 * 109.06422 * 305.29664 * 30 28 27 51 51 H 1.09001 * 109.06365 * 186.37513 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5309 2.2202 -0.0005 5 7 3.4867 1.1672 0.0005 6 6 4.2191 2.4359 0.0000 7 6 5.7234 2.1564 0.0001 8 6 6.4768 3.4616 0.0001 9 8 5.8704 4.5119 -0.0004 10 7 7.8246 3.4616 -0.0003 11 6 8.5571 4.7304 -0.0008 12 1 8.0185 5.4660 0.5964 13 6 8.7063 5.2407 -1.4386 14 6 9.3948 6.6023 -1.4003 15 6 10.7999 6.4878 -0.8064 16 1 11.5040 6.0161 -1.4918 17 6 11.2171 7.9288 -0.3841 18 7 10.4838 8.1713 0.8739 19 6 10.1358 9.3982 1.3729 20 1 9.5969 9.4685 2.3061 21 6 10.4747 10.5514 0.6785 22 7 11.1310 10.4656 -0.4592 23 14 9.9994 12.2250 1.3587 24 1 11.0869 12.7304 2.2344 25 1 9.7868 13.1733 0.2360 26 1 8.7466 12.1014 2.1464 27 6 10.1892 6.8710 1.5032 28 6 10.7589 5.7958 0.5695 29 1 11.7776 5.5620 0.8788 30 6 9.9555 4.5186 0.5787 31 1 -0.3634 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 1.9500 -0.8400 0.0041 35 1 3.9717 0.3272 0.0005 36 1 3.9561 3.0070 -0.8905 37 1 3.9554 3.0081 0.8894 38 1 5.9867 1.5854 0.8904 39 1 5.9868 1.5844 -0.8896 40 1 8.3096 2.6215 -0.0002 41 1 9.3113 4.5405 -2.0147 42 1 7.7222 5.3374 -1.8969 43 1 9.4654 6.9966 -2.4141 44 1 8.8036 7.2856 -0.7907 45 1 12.2924 7.9791 -0.2136 46 1 10.9172 8.6500 -1.1445 47 1 11.3682 11.2714 -0.9442 48 1 9.1119 6.7422 1.6080 49 1 10.6693 6.8103 2.4799 50 1 9.8654 4.1620 1.6047 51 1 10.4761 3.7663 -0.0138 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282946664.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:37 Heat of formation + Delta-G solvation = -49.460774 kcal Electronic energy + Delta-G solvation = -29620.796681 eV Core-core repulsion = 25555.293872 eV Total energy + Delta-G solvation = -4065.502809 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -40.40691 -40.02789 -38.88182 -35.86352 -35.32560 -34.79050 -33.36577 -31.77701 -31.29049 -30.51749 -28.86476 -27.04846 -25.95701 -24.93523 -23.64588 -22.17504 -21.41525 -21.30857 -20.46262 -19.85290 -19.05825 -18.16032 -17.23637 -16.83621 -16.41486 -16.34179 -16.14730 -15.49652 -14.82438 -14.72493 -14.55138 -14.38886 -14.09220 -13.85868 -13.71318 -13.54416 -13.44158 -13.04522 -12.62188 -12.46395 -12.25107 -12.16465 -11.96267 -11.81237 -11.69432 -11.46773 -11.07115 -10.99557 -10.85998 -10.59434 -10.56168 -10.46192 -9.99880 -9.96087 -9.78216 -9.65630 -9.64432 -9.39712 -9.34395 -9.19199 -8.89077 -8.58265 -6.75370 -5.58894 -2.99858 2.29398 2.57877 2.92046 3.15207 3.44979 3.50324 3.52312 3.92462 4.38530 4.55016 4.68913 4.71741 4.79371 4.93099 5.00089 5.08502 5.16108 5.34211 5.41644 5.50543 5.51963 5.61113 5.61263 5.65109 5.73112 5.73666 5.89040 5.90112 6.03103 6.04411 6.11512 6.12745 6.22249 6.33477 6.45272 6.48762 6.50919 6.58269 6.68489 6.75219 6.90086 7.02403 7.19144 7.46129 7.54444 7.63659 7.69237 7.92737 8.19298 8.28826 8.43018 9.28739 9.89456 10.55060 11.44757 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.017257 B = 0.002026 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.135426 B =13815.165054 C =14847.725515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.753 5.753 3 C 0.700 3.300 4 O -0.583 6.583 5 N -0.747 5.747 6 C 0.152 3.848 7 C -0.153 4.153 8 C 0.514 3.486 9 O -0.528 6.528 10 N -0.725 5.725 11 C 0.143 3.857 12 H 0.095 0.905 13 C -0.122 4.122 14 C -0.102 4.102 15 C -0.114 4.114 16 H 0.071 0.929 17 C 0.156 3.844 18 N -0.601 5.601 19 C -0.218 4.218 20 H 0.076 0.924 21 C -0.012 4.012 22 N -0.923 5.923 23 Si 0.913 3.087 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.140 3.860 28 C -0.091 4.091 29 H 0.065 0.935 30 C -0.106 4.106 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.396 0.604 35 H 0.394 0.606 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.396 0.604 41 H 0.055 0.945 42 H 0.059 0.941 43 H 0.056 0.944 44 H 0.078 0.922 45 H 0.007 0.993 46 H 0.110 0.890 47 H 0.251 0.749 48 H 0.025 0.975 49 H 0.019 0.981 50 H 0.062 0.938 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.124 -28.272 -1.418 30.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.409 5.409 3 C 0.400 3.600 4 O -0.460 6.460 5 N -0.403 5.403 6 C 0.027 3.973 7 C -0.193 4.193 8 C 0.298 3.702 9 O -0.404 6.404 10 N -0.376 5.376 11 C 0.040 3.960 12 H 0.113 0.887 13 C -0.161 4.161 14 C -0.140 4.140 15 C -0.133 4.133 16 H 0.089 0.911 17 C 0.031 3.969 18 N -0.327 5.327 19 C -0.347 4.347 20 H 0.094 0.906 21 C -0.208 4.208 22 N -0.572 5.572 23 Si 0.743 3.257 24 H -0.218 1.218 25 H -0.217 1.217 26 H -0.207 1.207 27 C 0.014 3.986 28 C -0.110 4.110 29 H 0.084 0.916 30 C -0.144 4.144 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.229 0.771 35 H 0.228 0.772 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.229 0.771 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.097 0.903 45 H 0.025 0.975 46 H 0.127 0.873 47 H 0.062 0.938 48 H 0.042 0.958 49 H 0.037 0.963 50 H 0.080 0.920 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.153 -26.240 -1.451 28.548 hybrid contribution 0.678 -0.501 0.418 0.941 sum -10.475 -26.741 -1.033 28.738 Atomic orbital electron populations 1.21399 0.78074 1.01907 1.02442 1.44917 1.07825 1.07045 1.81096 1.15951 0.81723 0.84329 0.78029 1.90983 1.67738 1.30277 1.57028 1.45083 1.04784 1.09741 1.80739 1.20901 0.87929 0.84095 1.04334 1.21801 0.95500 0.97121 1.04891 1.20248 0.82609 0.90779 0.76540 1.90802 1.67898 1.33310 1.48371 1.46128 1.06061 1.09926 1.75457 1.21129 0.92226 0.84919 0.97748 0.88661 1.21884 1.00431 0.98228 0.95561 1.21364 0.96045 0.95514 1.01083 1.22593 0.96583 0.99740 0.94420 0.91075 1.22241 0.93279 0.90990 0.90384 1.44583 1.65621 1.00020 1.22504 1.19082 1.29595 0.82024 1.03988 0.90589 1.24760 1.00813 0.97752 0.97436 1.69777 1.44839 1.26580 1.15963 0.86091 0.78004 0.83910 0.77652 1.21774 1.21704 1.20706 1.21222 0.97018 0.86220 0.94173 1.21243 0.98679 0.93512 0.97579 0.91626 1.21189 0.94289 0.98408 1.00563 0.92325 0.92312 0.90693 0.77083 0.77233 0.90484 0.90454 0.88330 0.88332 0.77074 0.92621 0.92211 0.92510 0.90316 0.97478 0.87267 0.93836 0.95761 0.96330 0.91974 0.91979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.59 10.70 59.85 0.64 1.23 16 2 N -0.75 -4.69 5.72 -72.06 -0.41 -5.10 16 3 C 0.70 7.25 8.57 -86.92 -0.74 6.50 16 4 O -0.58 -9.19 16.34 5.28 0.09 -9.10 16 5 N -0.75 -5.53 5.56 -65.22 -0.36 -5.89 16 6 C 0.15 1.48 4.96 -4.04 -0.02 1.46 16 7 C -0.15 -1.03 5.81 -27.88 -0.16 -1.19 16 8 C 0.51 5.96 7.80 -10.98 -0.09 5.87 16 9 O -0.53 -8.98 15.66 5.56 0.09 -8.89 16 10 N -0.72 -7.42 5.10 -53.74 -0.27 -7.69 16 11 C 0.14 1.98 2.31 -67.86 -0.16 1.82 16 12 H 0.10 1.68 6.22 -51.93 -0.32 1.36 16 13 C -0.12 -1.81 5.52 -26.77 -0.15 -1.96 16 14 C -0.10 -1.85 4.81 -26.93 -0.13 -1.98 16 15 C -0.11 -2.09 3.72 -88.55 -0.33 -2.42 16 16 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 17 C 0.16 3.76 5.18 -1.91 -0.01 3.75 16 18 N -0.60 -15.43 2.93 -169.58 -0.50 -15.93 16 19 C -0.22 -6.19 10.28 -15.06 -0.15 -6.35 16 20 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 21 C -0.01 -0.36 5.49 -17.43 -0.10 -0.45 16 22 N -0.92 -27.15 10.09 55.49 0.56 -26.59 16 23 Si 0.91 22.66 29.55 -169.99 -5.02 17.64 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 26 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 27 C 0.14 2.92 6.25 -3.34 -0.02 2.90 16 28 C -0.09 -1.52 2.69 -90.93 -0.24 -1.77 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 30 C -0.11 -1.35 4.83 -27.87 -0.13 -1.49 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.17 8.14 -51.93 -0.42 -0.26 16 34 H 0.40 1.03 8.84 -40.82 -0.36 0.67 16 35 H 0.39 1.34 8.49 -40.82 -0.35 0.99 16 36 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 37 H 0.08 0.95 8.10 -51.93 -0.42 0.53 16 38 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.40 2.60 8.60 -40.82 -0.35 2.24 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.08 1.73 7.16 -51.93 -0.37 1.36 16 45 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 16 46 H 0.11 2.97 5.68 -51.93 -0.30 2.68 16 47 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 48 H 0.02 0.52 6.49 -51.93 -0.34 0.18 16 49 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 51 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 399.01 15.07 6.01 6.01 Total: -1.00 -37.54 399.01 -10.31 -47.85 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -8.69 Total: 1.74 kcal Atomic # 6 Polarization: 7.75 SS G_CDS: -1.80 Total: 5.95 kcal Atomic # 7 Polarization: -60.22 SS G_CDS: -0.99 Total: -61.20 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: 0.17 Total: -17.99 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -37.54 -10.31 -47.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282946664.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.611 kcal (2) G-P(sol) polarization free energy of solvation -37.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds