Wall clock time and date at job start Tue Mar 31 2020 20:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46904 * 111.00220 * 2 1 4 4 C 1.46896 * 110.99983 * 123.95651 * 2 1 3 5 5 C 1.50699 * 112.84896 * 301.65249 * 4 2 1 6 6 O 1.21277 * 120.00374 * 351.16009 * 5 4 2 7 7 N 1.34783 * 119.99816 * 171.15463 * 5 4 2 8 8 C 1.46498 * 119.99507 * 175.60876 * 7 5 4 9 9 C 1.53006 * 109.47111 * 180.02562 * 8 7 5 10 10 C 1.53510 * 114.17280 * 185.00038 * 9 8 7 11 11 N 1.47486 * 87.92975 * 220.32898 * 10 9 8 12 12 C 1.46903 * 110.99939 * 138.70228 * 11 10 9 13 13 C 1.50692 * 109.47058 * 169.99585 * 12 11 10 14 14 O 1.21297 * 120.00211 * 0.02562 * 13 12 11 15 15 N 1.34779 * 120.00155 * 179.72331 * 13 12 11 16 16 C 1.37091 * 120.00154 * 180.02562 * 15 13 12 17 17 H 1.08003 * 120.00242 * 0.02562 * 16 15 13 18 18 C 1.38958 * 119.99984 * 180.02562 * 16 15 13 19 19 N 1.31408 * 119.99881 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 119.99942 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47029 * 89.99587 * 20 18 16 22 22 H 1.48496 * 109.47384 * 210.00018 * 20 18 16 23 23 H 1.48507 * 109.47048 * 330.00197 * 20 18 16 24 24 C 1.47479 * 87.83801 * 27.00900 * 11 10 9 25 25 C 1.53785 * 113.69401 * 72.92475 * 4 2 1 26 26 C 1.53775 * 87.08128 * 89.12597 * 25 4 2 27 27 C 1.53785 * 113.61492 * 170.46131 * 4 2 1 28 28 H 1.09003 * 109.47427 * 296.91215 * 1 2 3 29 29 H 1.09004 * 109.46995 * 56.90959 * 1 2 3 30 30 H 1.09000 * 109.47115 * 176.90774 * 1 2 3 31 31 H 1.09001 * 109.47063 * 183.95218 * 3 2 1 32 32 H 1.08998 * 109.47375 * 303.95389 * 3 2 1 33 33 H 1.09001 * 109.46691 * 63.95573 * 3 2 1 34 34 H 0.96996 * 120.00092 * 355.61060 * 7 5 4 35 35 H 1.08998 * 109.47563 * 60.00161 * 8 7 5 36 36 H 1.09004 * 109.47599 * 299.99855 * 8 7 5 37 37 H 1.09001 * 113.37986 * 318.08178 * 9 8 7 38 38 H 1.09000 * 113.47792 * 105.56261 * 10 9 8 39 39 H 1.09001 * 113.52821 * 335.09941 * 10 9 8 40 40 H 1.09004 * 109.46433 * 50.00058 * 12 11 10 41 41 H 1.08992 * 109.46994 * 290.00124 * 12 11 10 42 42 H 0.96995 * 119.99795 * 0.02562 * 15 13 12 43 43 H 0.97002 * 120.00048 * 179.97438 * 19 18 16 44 44 H 1.09001 * 113.47457 * 87.75585 * 24 11 10 45 45 H 1.08993 * 113.47948 * 218.22075 * 24 11 10 46 46 H 1.08993 * 113.61569 * 203.67986 * 25 4 2 47 47 H 1.09000 * 113.60948 * 334.58303 * 25 4 2 48 48 H 1.09003 * 113.61870 * 270.88642 * 26 25 4 49 49 H 1.09002 * 113.69239 * 139.99087 * 26 25 4 50 50 H 1.08998 * 113.61537 * 25.34592 * 27 4 2 51 51 H 1.09002 * 113.61321 * 156.25448 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 1.5247 -0.2365 2.4676 6 8 0.9234 0.8153 2.5232 7 7 1.7719 -0.9318 3.5954 8 6 1.4001 -0.3721 4.8972 9 6 1.7881 -1.3545 6.0043 10 6 1.3372 -0.9290 7.4087 11 7 2.6371 -1.4095 7.9133 12 6 3.1869 -0.4861 8.9149 13 6 4.3792 -1.1213 9.5827 14 8 4.7361 -2.2336 9.2561 15 7 5.0526 -0.4510 10.5386 16 6 6.1376 -1.0286 11.1457 17 1 6.4529 -2.0206 10.8578 18 6 6.8316 -0.3377 12.1316 19 7 7.8719 -0.8912 12.7133 20 14 6.2857 1.3778 12.6301 21 1 5.3022 1.2817 13.7384 22 1 7.4643 2.1609 13.0805 23 1 5.6567 2.0545 11.4674 24 6 3.1953 -1.1328 6.5766 25 6 1.8308 -2.2876 0.9871 26 6 3.1993 -2.2871 0.2857 27 6 3.5134 -1.0028 1.0711 28 1 -0.3634 0.4651 0.9164 29 1 -0.3633 0.5611 -0.8610 30 1 -0.3633 -1.0262 -0.0554 31 1 3.0828 1.3432 -0.0708 32 1 1.5898 1.9164 -0.8524 33 1 1.7044 1.8723 0.9233 34 1 2.1960 -1.8027 3.5451 35 1 0.3243 -0.1996 4.9248 36 1 1.9235 0.5718 5.0498 37 1 1.5645 -2.3928 5.7592 38 1 0.4879 -1.4999 7.7836 39 1 1.2014 0.1474 7.5146 40 1 2.4254 -0.2665 9.6633 41 1 3.4938 0.4387 8.4265 42 1 4.7697 0.4401 10.7969 43 1 8.3566 -0.4088 13.4012 44 1 3.5556 -0.1108 6.4595 45 1 3.9205 -1.8765 6.2464 46 1 1.8270 -2.8224 1.9368 47 1 1.0061 -2.5751 0.3349 48 1 3.1377 -2.1358 -0.7920 49 1 3.8318 -3.1317 0.5591 50 1 4.0471 -0.2532 0.4868 51 1 3.9696 -1.1864 2.0438 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318128059.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:07 Heat of formation + Delta-G solvation = 12.409229 kcal Electronic energy + Delta-G solvation = -29626.856779 eV Core-core repulsion = 25564.036855 eV Total energy + Delta-G solvation = -4062.819924 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.36767 -40.35842 -38.27025 -37.90001 -35.93286 -34.48130 -33.93092 -31.73115 -31.11823 -28.32479 -28.15873 -26.48685 -26.00076 -25.66800 -24.83331 -23.36224 -22.41075 -21.46664 -20.08868 -19.41886 -19.03778 -18.34773 -17.77034 -16.77188 -16.25100 -16.06981 -15.73041 -15.45271 -15.28834 -15.13243 -14.89148 -14.75043 -14.48271 -14.32770 -13.85051 -13.56814 -13.33827 -13.05166 -12.89068 -12.67816 -12.54585 -12.34606 -12.25736 -12.17386 -12.09045 -11.86968 -11.77790 -11.63595 -11.51047 -11.20764 -11.10800 -10.87370 -10.68707 -10.62776 -10.59591 -10.36836 -9.98128 -9.56905 -9.37309 -8.93119 -8.49322 -8.34527 -8.18057 -6.31372 -3.82687 2.20798 2.80517 3.01134 3.05775 3.13964 3.41539 3.72794 3.86220 4.08036 4.09504 4.11529 4.15749 4.37936 4.41755 4.50948 4.68528 4.71210 4.94376 4.96108 5.11929 5.15705 5.19984 5.22868 5.23538 5.25726 5.31292 5.36338 5.41853 5.47386 5.50526 5.51061 5.53700 5.54112 5.61938 5.65950 5.72890 5.77512 5.82976 5.87322 5.91067 6.00742 6.17460 6.38799 6.57349 6.58635 7.02068 7.15809 7.57828 7.88188 8.13900 8.60253 8.95243 9.42255 9.83965 10.81857 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.019835 B = 0.001942 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.307621 B =14415.365019 C =14513.089943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 N -0.497 5.497 3 C 0.009 3.991 4 C 0.060 3.940 5 C 0.500 3.500 6 O -0.542 6.542 7 N -0.723 5.723 8 C 0.130 3.870 9 C -0.131 4.131 10 C 0.005 3.995 11 N -0.439 5.439 12 C 0.005 3.995 13 C 0.455 3.545 14 O -0.557 6.557 15 N -0.594 5.594 16 C -0.304 4.304 17 H 0.119 0.881 18 C 0.040 3.960 19 N -0.882 5.882 20 Si 0.880 3.120 21 H -0.271 1.271 22 H -0.277 1.277 23 H -0.270 1.270 24 C 0.009 3.991 25 C -0.123 4.123 26 C -0.125 4.125 27 C -0.122 4.122 28 H 0.052 0.948 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.056 0.944 34 H 0.402 0.598 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.109 0.891 38 H 0.089 0.911 39 H 0.070 0.930 40 H 0.090 0.910 41 H 0.060 0.940 42 H 0.369 0.631 43 H 0.273 0.727 44 H 0.068 0.932 45 H 0.089 0.911 46 H 0.087 0.913 47 H 0.081 0.919 48 H 0.091 0.909 49 H 0.072 0.928 50 H 0.081 0.919 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.332 2.905 -25.088 29.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 N -0.219 5.219 3 C -0.139 4.139 4 C -0.034 4.034 5 C 0.285 3.715 6 O -0.419 6.419 7 N -0.376 5.376 8 C 0.006 3.994 9 C -0.150 4.150 10 C -0.125 4.125 11 N -0.161 5.161 12 C -0.127 4.127 13 C 0.241 3.759 14 O -0.438 6.438 15 N -0.234 5.234 16 C -0.433 4.433 17 H 0.137 0.863 18 C -0.162 4.162 19 N -0.522 5.522 20 Si 0.706 3.294 21 H -0.196 1.196 22 H -0.202 1.202 23 H -0.196 1.196 24 C -0.120 4.120 25 C -0.161 4.161 26 C -0.162 4.162 27 C -0.160 4.160 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.237 0.763 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.128 0.872 38 H 0.107 0.893 39 H 0.088 0.912 40 H 0.108 0.892 41 H 0.078 0.922 42 H 0.202 0.798 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.108 0.892 46 H 0.106 0.894 47 H 0.099 0.901 48 H 0.109 0.891 49 H 0.091 0.909 50 H 0.100 0.900 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -15.088 2.051 -25.194 29.439 hybrid contribution -0.399 2.408 1.190 2.716 sum -15.487 4.459 -24.004 28.912 Atomic orbital electron populations 1.22532 0.86930 1.02061 1.02250 1.62327 1.08599 1.14495 1.36514 1.22558 1.00347 0.88598 1.02386 1.22501 0.98110 0.95815 0.86963 1.21645 0.78886 0.84584 0.86367 1.90628 1.40801 1.23378 1.87135 1.46160 1.62708 1.22618 1.06086 1.21371 1.00703 0.96335 0.80968 1.23020 0.97932 1.00450 0.93632 1.23840 0.95786 0.99805 0.93067 1.68823 1.02182 1.41822 1.03223 1.22552 0.98271 0.94634 0.97247 1.19554 0.85645 0.87438 0.83308 1.90563 1.68665 1.19733 1.64805 1.42223 1.28805 1.16585 1.35777 1.19421 1.03702 1.03572 1.16564 0.86314 1.25038 0.96104 0.98361 0.96736 1.69620 1.18674 1.37976 1.25944 0.86670 0.79140 0.84305 0.79239 1.19615 1.20180 1.19608 1.23979 0.96426 1.01227 0.90390 1.23011 0.99676 0.91848 1.01600 1.22722 0.95867 0.97172 1.00436 1.23035 0.92110 0.99187 1.01706 0.92977 0.91306 0.91764 0.91646 0.91422 0.92560 0.76267 0.91069 0.91349 0.87239 0.89253 0.91203 0.89205 0.92163 0.79800 0.91633 0.91340 0.89207 0.89446 0.90059 0.89092 0.90910 0.90050 0.89122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.14 60.06 0.55 0.63 16 2 N -0.50 -4.27 4.80 -235.80 -1.13 -5.40 16 3 C 0.01 0.08 9.17 60.07 0.55 0.63 16 4 C 0.06 0.48 0.42 -131.94 -0.06 0.42 16 5 C 0.50 4.98 6.49 -10.98 -0.07 4.91 16 6 O -0.54 -7.17 12.31 5.56 0.07 -7.10 16 7 N -0.72 -5.94 5.28 -60.29 -0.32 -6.26 16 8 C 0.13 1.16 5.59 -4.04 -0.02 1.14 16 9 C -0.13 -1.23 4.09 -90.09 -0.37 -1.60 16 10 C 0.00 0.05 7.26 -7.53 -0.05 0.00 16 11 N -0.44 -6.69 5.82 -246.06 -1.43 -8.13 16 12 C 0.01 0.09 5.30 -4.98 -0.03 0.06 16 13 C 0.46 10.45 7.85 -10.99 -0.09 10.36 16 14 O -0.56 -15.21 16.01 5.54 0.09 -15.12 16 15 N -0.59 -14.25 5.09 -10.96 -0.06 -14.31 16 16 C -0.30 -8.65 10.16 -14.93 -0.15 -8.80 16 17 H 0.12 3.87 7.39 -52.48 -0.39 3.48 16 18 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 19 N -0.88 -25.85 13.96 55.50 0.77 -25.08 16 20 Si 0.88 19.43 27.74 -169.99 -4.71 14.72 16 21 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 22 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 23 H -0.27 -5.44 6.52 56.52 0.37 -5.07 16 24 C 0.01 0.11 7.28 -7.53 -0.05 0.06 16 25 C -0.12 -0.74 7.06 -25.92 -0.18 -0.92 16 26 C -0.12 -0.70 7.99 -25.92 -0.21 -0.91 16 27 C -0.12 -0.82 7.13 -25.91 -0.18 -1.01 16 28 H 0.05 0.55 5.86 -51.93 -0.30 0.25 16 29 H 0.07 0.50 8.13 -51.93 -0.42 0.08 16 30 H 0.06 0.47 7.06 -51.93 -0.37 0.10 16 31 H 0.06 0.52 6.62 -51.93 -0.34 0.17 16 32 H 0.07 0.51 8.13 -51.93 -0.42 0.09 16 33 H 0.06 0.62 5.84 -51.93 -0.30 0.32 16 34 H 0.40 2.53 6.94 -40.82 -0.28 2.25 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.68 7.81 -51.93 -0.41 0.28 16 37 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.07 0.66 7.87 -51.93 -0.41 0.25 16 40 H 0.09 1.29 8.08 -51.93 -0.42 0.87 16 41 H 0.06 0.86 7.30 -51.93 -0.38 0.48 16 42 H 0.37 7.76 5.76 -40.82 -0.24 7.52 16 43 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 44 H 0.07 0.83 7.15 -51.93 -0.37 0.46 16 45 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 46 H 0.09 0.42 6.63 -51.93 -0.34 0.08 16 47 H 0.08 0.49 7.16 -51.93 -0.37 0.12 16 48 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 49 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 50 H 0.08 0.57 6.66 -51.93 -0.35 0.22 16 51 H 0.09 0.57 7.98 -51.93 -0.41 0.16 16 LS Contribution 397.70 15.07 5.99 5.99 Total: -1.00 -35.17 397.70 -9.43 -44.59 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -8.23 Total: 10.09 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: -0.46 Total: 5.98 kcal Atomic # 7 Polarization: -57.00 SS G_CDS: -2.16 Total: -59.16 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: 0.16 Total: -22.21 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -4.71 Total: 14.72 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.17 -9.43 -44.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318128059.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.002 kcal (2) G-P(sol) polarization free energy of solvation -35.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds