Wall clock time and date at job start Tue Mar 31 2020 20:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46904 * 111.00220 * 2 1 4 4 C 1.46896 * 110.99983 * 123.95651 * 2 1 3 5 5 C 1.50699 * 112.84896 * 301.65249 * 4 2 1 6 6 O 1.21277 * 120.00374 * 351.16009 * 5 4 2 7 7 N 1.34783 * 119.99816 * 171.15463 * 5 4 2 8 8 C 1.46498 * 119.99507 * 175.60876 * 7 5 4 9 9 C 1.53006 * 109.47111 * 180.02562 * 8 7 5 10 10 C 1.53510 * 114.17280 * 185.00038 * 9 8 7 11 11 N 1.47486 * 87.92975 * 220.32898 * 10 9 8 12 12 C 1.46903 * 110.99939 * 138.70228 * 11 10 9 13 13 C 1.50692 * 109.47058 * 169.99585 * 12 11 10 14 14 O 1.21297 * 120.00211 * 0.02562 * 13 12 11 15 15 N 1.34779 * 120.00155 * 179.72331 * 13 12 11 16 16 C 1.37091 * 120.00154 * 180.02562 * 15 13 12 17 17 H 1.08003 * 120.00242 * 0.02562 * 16 15 13 18 18 C 1.38958 * 119.99984 * 180.02562 * 16 15 13 19 19 N 1.31408 * 119.99881 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 119.99942 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47029 * 89.99587 * 20 18 16 22 22 H 1.48496 * 109.47384 * 210.00018 * 20 18 16 23 23 H 1.48507 * 109.47048 * 330.00197 * 20 18 16 24 24 C 1.47479 * 87.83801 * 27.00900 * 11 10 9 25 25 C 1.53785 * 113.69401 * 72.92475 * 4 2 1 26 26 C 1.53775 * 87.08128 * 89.12597 * 25 4 2 27 27 C 1.53785 * 113.61492 * 170.46131 * 4 2 1 28 28 H 1.09003 * 109.47427 * 296.91215 * 1 2 3 29 29 H 1.09004 * 109.46995 * 56.90959 * 1 2 3 30 30 H 1.09000 * 109.47115 * 176.90774 * 1 2 3 31 31 H 1.09001 * 109.47063 * 183.95218 * 3 2 1 32 32 H 1.08998 * 109.47375 * 303.95389 * 3 2 1 33 33 H 1.09001 * 109.46691 * 63.95573 * 3 2 1 34 34 H 0.96996 * 120.00092 * 355.61060 * 7 5 4 35 35 H 1.08998 * 109.47563 * 60.00161 * 8 7 5 36 36 H 1.09004 * 109.47599 * 299.99855 * 8 7 5 37 37 H 1.09001 * 113.37986 * 318.08178 * 9 8 7 38 38 H 1.09000 * 113.47792 * 105.56261 * 10 9 8 39 39 H 1.09001 * 113.52821 * 335.09941 * 10 9 8 40 40 H 1.09004 * 109.46433 * 50.00058 * 12 11 10 41 41 H 1.08992 * 109.46994 * 290.00124 * 12 11 10 42 42 H 0.96995 * 119.99795 * 0.02562 * 15 13 12 43 43 H 0.97002 * 120.00048 * 179.97438 * 19 18 16 44 44 H 1.09001 * 113.47457 * 87.75585 * 24 11 10 45 45 H 1.08993 * 113.47948 * 218.22075 * 24 11 10 46 46 H 1.08993 * 113.61569 * 203.67986 * 25 4 2 47 47 H 1.09000 * 113.60948 * 334.58303 * 25 4 2 48 48 H 1.09003 * 113.61870 * 270.88642 * 26 25 4 49 49 H 1.09002 * 113.69239 * 139.99087 * 26 25 4 50 50 H 1.08998 * 113.61537 * 25.34592 * 27 4 2 51 51 H 1.09002 * 113.61321 * 156.25448 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 1.5247 -0.2365 2.4676 6 8 0.9234 0.8153 2.5232 7 7 1.7719 -0.9318 3.5954 8 6 1.4001 -0.3721 4.8972 9 6 1.7881 -1.3545 6.0043 10 6 1.3372 -0.9290 7.4087 11 7 2.6371 -1.4095 7.9133 12 6 3.1869 -0.4861 8.9149 13 6 4.3792 -1.1213 9.5827 14 8 4.7361 -2.2336 9.2561 15 7 5.0526 -0.4510 10.5386 16 6 6.1376 -1.0286 11.1457 17 1 6.4529 -2.0206 10.8578 18 6 6.8316 -0.3377 12.1316 19 7 7.8719 -0.8912 12.7133 20 14 6.2857 1.3778 12.6301 21 1 5.3022 1.2817 13.7384 22 1 7.4643 2.1609 13.0805 23 1 5.6567 2.0545 11.4674 24 6 3.1953 -1.1328 6.5766 25 6 1.8308 -2.2876 0.9871 26 6 3.1993 -2.2871 0.2857 27 6 3.5134 -1.0028 1.0711 28 1 -0.3634 0.4651 0.9164 29 1 -0.3633 0.5611 -0.8610 30 1 -0.3633 -1.0262 -0.0554 31 1 3.0828 1.3432 -0.0708 32 1 1.5898 1.9164 -0.8524 33 1 1.7044 1.8723 0.9233 34 1 2.1960 -1.8027 3.5451 35 1 0.3243 -0.1996 4.9248 36 1 1.9235 0.5718 5.0498 37 1 1.5645 -2.3928 5.7592 38 1 0.4879 -1.4999 7.7836 39 1 1.2014 0.1474 7.5146 40 1 2.4254 -0.2665 9.6633 41 1 3.4938 0.4387 8.4265 42 1 4.7697 0.4401 10.7969 43 1 8.3566 -0.4088 13.4012 44 1 3.5556 -0.1108 6.4595 45 1 3.9205 -1.8765 6.2464 46 1 1.8270 -2.8224 1.9368 47 1 1.0061 -2.5751 0.3349 48 1 3.1377 -2.1358 -0.7920 49 1 3.8318 -3.1317 0.5591 50 1 4.0471 -0.2532 0.4868 51 1 3.9696 -1.1864 2.0438 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318128059.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:05 Heat of formation + Delta-G solvation = -17.848479 kcal Electronic energy + Delta-G solvation = -29628.168852 eV Core-core repulsion = 25564.036855 eV Total energy + Delta-G solvation = -4064.131997 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.05639 -41.38532 -39.81452 -38.85266 -36.64184 -35.99521 -35.18700 -33.77617 -32.25688 -29.24165 -28.91735 -27.44998 -26.92902 -26.36259 -26.18810 -24.31298 -23.35664 -22.14161 -21.28002 -20.89340 -20.28809 -19.69253 -18.47426 -17.80228 -17.48214 -16.93948 -16.80632 -16.63339 -16.40168 -16.26342 -15.92779 -15.69470 -15.47804 -15.03595 -14.96218 -14.88991 -14.58345 -14.38960 -14.25117 -13.78057 -13.64780 -13.38973 -13.05229 -12.97264 -12.91267 -12.73623 -12.68045 -12.50342 -12.45156 -12.40002 -12.33326 -12.00176 -11.89802 -11.62833 -11.53475 -11.49716 -11.21310 -11.05345 -10.47799 -10.25846 -10.11975 -9.75396 -9.19831 -8.42573 -6.03424 1.28176 1.34044 1.42732 1.47807 1.94831 2.11095 2.21400 2.65470 2.80364 3.12178 3.21806 3.35296 3.52537 3.58694 3.68353 3.77383 3.90298 4.06070 4.13442 4.16582 4.21870 4.32028 4.37980 4.40536 4.46951 4.56043 4.58689 4.64445 4.68808 4.69442 4.70948 4.79209 4.84895 4.90996 4.92778 5.00453 5.10611 5.13071 5.19261 5.20579 5.35711 5.40273 5.45967 5.52273 5.90124 5.92165 5.94926 6.02852 6.48757 6.58631 6.87300 7.17448 7.38682 7.96630 8.75159 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.019835 B = 0.001942 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.307621 B =14415.365019 C =14513.089943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.497 5.497 3 C 0.012 3.988 4 C 0.053 3.947 5 C 0.497 3.503 6 O -0.577 6.577 7 N -0.715 5.715 8 C 0.138 3.862 9 C -0.104 4.104 10 C 0.011 3.989 11 N -0.480 5.480 12 C 0.018 3.982 13 C 0.452 3.548 14 O -0.610 6.610 15 N -0.594 5.594 16 C -0.328 4.328 17 H 0.054 0.946 18 C -0.017 4.017 19 N -0.934 5.934 20 Si 0.966 3.034 21 H -0.257 1.257 22 H -0.275 1.275 23 H -0.232 1.232 24 C 0.003 3.997 25 C -0.118 4.118 26 C -0.116 4.116 27 C -0.123 4.123 28 H 0.028 0.972 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.031 0.969 34 H 0.412 0.588 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.118 0.882 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.118 0.882 41 H 0.090 0.910 42 H 0.389 0.611 43 H 0.279 0.721 44 H 0.076 0.924 45 H 0.068 0.932 46 H 0.101 0.899 47 H 0.083 0.917 48 H 0.088 0.912 49 H 0.085 0.915 50 H 0.077 0.923 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.432 4.806 -25.960 31.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.219 5.219 3 C -0.136 4.136 4 C -0.041 4.041 5 C 0.283 3.717 6 O -0.458 6.458 7 N -0.368 5.368 8 C 0.014 3.986 9 C -0.123 4.123 10 C -0.118 4.118 11 N -0.202 5.202 12 C -0.114 4.114 13 C 0.240 3.760 14 O -0.493 6.493 15 N -0.236 5.236 16 C -0.457 4.457 17 H 0.072 0.928 18 C -0.215 4.215 19 N -0.575 5.575 20 Si 0.785 3.215 21 H -0.181 1.181 22 H -0.200 1.200 23 H -0.156 1.156 24 C -0.126 4.126 25 C -0.156 4.156 26 C -0.154 4.154 27 C -0.161 4.161 28 H 0.047 0.953 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.050 0.950 34 H 0.249 0.751 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.136 0.864 38 H 0.118 0.882 39 H 0.108 0.892 40 H 0.136 0.864 41 H 0.108 0.892 42 H 0.224 0.776 43 H 0.089 0.911 44 H 0.094 0.906 45 H 0.087 0.913 46 H 0.119 0.881 47 H 0.101 0.899 48 H 0.107 0.893 49 H 0.103 0.897 50 H 0.095 0.905 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -17.206 3.933 -26.085 31.495 hybrid contribution 0.292 1.676 1.412 2.211 sum -16.915 5.609 -24.673 30.436 Atomic orbital electron populations 1.22509 0.86900 1.02624 1.01414 1.62376 1.08624 1.14235 1.36699 1.22519 1.00805 0.88772 1.01486 1.22682 0.98894 0.96824 0.85712 1.22046 0.78285 0.84111 0.87283 1.90620 1.42508 1.24973 1.87670 1.46100 1.62167 1.22883 1.05605 1.21240 1.00629 0.95779 0.80937 1.22816 0.95175 1.00977 0.93348 1.23922 0.93827 1.01196 0.92828 1.68772 1.04740 1.42736 1.03938 1.22484 0.95695 0.95045 0.98163 1.20911 0.86408 0.86715 0.82000 1.90535 1.70353 1.22364 1.66076 1.42065 1.27953 1.17456 1.36150 1.18993 1.06259 1.02015 1.18467 0.92785 1.26129 0.95493 1.04139 0.95747 1.69804 1.20303 1.40684 1.26712 0.85355 0.79120 0.76735 0.80241 1.18108 1.19976 1.15568 1.24043 0.97758 1.00997 0.89843 1.23062 0.99957 0.90177 1.02383 1.22674 0.95712 0.96895 1.00088 1.23082 0.91149 0.99733 1.02129 0.95311 0.90453 0.90674 0.91008 0.90514 0.95003 0.75054 0.90876 0.92104 0.86409 0.88219 0.89152 0.86360 0.89211 0.77563 0.91141 0.90602 0.91301 0.88115 0.89881 0.89346 0.89657 0.90459 0.88716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 9.14 127.69 1.17 1.38 16 2 N -0.50 -8.07 4.80 -899.94 -4.32 -12.39 16 3 C 0.01 0.21 9.17 127.69 1.17 1.38 16 4 C 0.05 0.78 0.42 3.31 0.00 0.78 16 5 C 0.50 9.38 6.49 87.66 0.57 9.95 16 6 O -0.58 -15.12 12.31 -3.02 -0.04 -15.16 16 7 N -0.71 -10.50 5.28 -463.05 -2.44 -12.94 16 8 C 0.14 2.16 5.59 86.38 0.48 2.64 16 9 C -0.10 -1.69 4.09 -10.45 -0.04 -1.73 16 10 C 0.01 0.20 7.26 83.58 0.61 0.81 16 11 N -0.48 -13.69 5.82 -932.40 -5.43 -19.12 16 12 C 0.02 0.54 5.30 85.55 0.45 0.99 16 13 C 0.45 20.71 7.85 87.65 0.69 21.40 16 14 O -0.61 -34.57 16.01 -3.08 -0.05 -34.62 16 15 N -0.59 -28.31 5.09 -306.98 -1.56 -29.87 16 16 C -0.33 -19.42 10.16 84.04 0.85 -18.56 16 17 H 0.05 3.81 7.39 -2.91 -0.02 3.79 16 18 C -0.02 -0.93 5.50 84.93 0.47 -0.46 16 19 N -0.93 -56.64 13.96 21.67 0.30 -56.33 16 20 Si 0.97 38.93 27.74 68.60 1.90 40.83 16 21 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 22 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 23 H -0.23 -7.87 6.52 99.48 0.65 -7.22 16 24 C 0.00 0.06 7.28 83.58 0.61 0.67 16 25 C -0.12 -1.17 7.06 31.12 0.22 -0.95 16 26 C -0.12 -1.08 7.99 31.12 0.25 -0.83 16 27 C -0.12 -1.48 7.13 31.12 0.22 -1.26 16 28 H 0.03 0.60 5.86 -2.39 -0.01 0.59 16 29 H 0.08 1.06 8.13 -2.38 -0.02 1.04 16 30 H 0.07 1.00 7.06 -2.39 -0.02 0.99 16 31 H 0.07 1.09 6.62 -2.39 -0.02 1.08 16 32 H 0.08 1.12 8.13 -2.39 -0.02 1.10 16 33 H 0.03 0.71 5.84 -2.39 -0.01 0.70 16 34 H 0.41 4.33 6.94 -92.71 -0.64 3.68 16 35 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.06 1.09 7.81 -2.38 -0.02 1.07 16 37 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.09 1.30 7.87 -2.39 -0.02 1.28 16 40 H 0.12 2.93 8.08 -2.38 -0.02 2.91 16 41 H 0.09 2.21 7.30 -2.39 -0.02 2.20 16 42 H 0.39 15.27 5.76 -92.71 -0.53 14.73 16 43 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 44 H 0.08 1.68 7.15 -2.39 -0.02 1.66 16 45 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 46 H 0.10 0.72 6.63 -2.39 -0.02 0.70 16 47 H 0.08 0.82 7.16 -2.39 -0.02 0.81 16 48 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 49 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 50 H 0.08 1.00 6.66 -2.39 -0.02 0.98 16 51 H 0.09 1.05 7.98 -2.39 -0.02 1.03 16 Total: -1.00 -82.93 397.70 -4.20 -87.14 By element: Atomic # 1 Polarization: 36.54 SS G_CDS: -0.28 Total: 36.26 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: 7.72 Total: 16.21 kcal Atomic # 7 Polarization: -117.20 SS G_CDS: -13.45 Total: -130.66 kcal Atomic # 8 Polarization: -49.69 SS G_CDS: -0.09 Total: -49.78 kcal Atomic # 14 Polarization: 38.93 SS G_CDS: 1.90 Total: 40.83 kcal Total: -82.93 -4.20 -87.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318128059.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.288 kcal (2) G-P(sol) polarization free energy of solvation -82.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds