Wall clock time and date at job start Tue Mar 31 2020 21:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 120.00115 * 2 1 4 4 H 1.48498 * 109.47148 * 240.00023 * 3 2 1 5 5 H 1.48500 * 109.46960 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47082 * 119.99914 * 3 2 1 7 7 C 1.38810 * 119.99976 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00294 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99864 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99899 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46925 * 180.02562 * 10 9 7 12 12 H 1.08995 * 109.47216 * 295.00133 * 11 10 9 13 13 N 1.46498 * 109.47065 * 55.00022 * 11 10 9 14 14 C 1.34777 * 119.99828 * 204.72115 * 13 11 10 15 15 O 1.21283 * 120.00222 * 0.28168 * 14 13 11 16 16 C 1.50703 * 120.00290 * 180.27728 * 14 13 11 17 17 C 1.52990 * 109.47398 * 180.02562 * 16 14 13 18 18 C 1.52995 * 109.47353 * 179.97438 * 17 16 14 19 19 H 1.09003 * 110.27679 * 55.63717 * 18 17 16 20 20 C 1.54950 * 110.31589 * 177.83486 * 18 17 16 21 21 C 1.55301 * 100.94259 * 155.36178 * 20 18 17 22 22 C 1.54377 * 102.25380 * 325.86710 * 21 20 18 23 23 O 1.43237 * 107.58844 * 21.35877 * 22 21 20 24 24 C 1.52999 * 109.47083 * 175.00128 * 11 10 9 25 25 C 1.52999 * 109.47156 * 299.99894 * 24 11 10 26 26 C 1.53002 * 109.47157 * 179.97438 * 25 24 11 27 27 C 1.53004 * 109.46769 * 60.00298 * 26 25 24 28 28 C 1.52999 * 109.47038 * 299.99776 * 27 26 25 29 29 C 1.52997 * 109.47278 * 179.97438 * 24 11 10 30 30 H 0.97004 * 119.99658 * 359.97438 * 1 2 3 31 31 H 0.96997 * 120.00041 * 0.02562 * 9 7 2 32 32 H 1.08997 * 109.46993 * 60.00872 * 10 9 7 33 33 H 1.08999 * 109.47017 * 300.00292 * 10 9 7 34 34 H 0.97001 * 120.00384 * 25.00562 * 13 11 10 35 35 H 1.08998 * 109.46954 * 300.00581 * 16 14 13 36 36 H 1.09002 * 109.46946 * 59.99717 * 16 14 13 37 37 H 1.08998 * 109.47508 * 300.00200 * 17 16 14 38 38 H 1.09011 * 109.47182 * 60.00188 * 17 16 14 39 39 H 1.09002 * 111.12421 * 273.28334 * 20 18 17 40 40 H 1.08999 * 111.11842 * 37.43884 * 20 18 17 41 41 H 1.09003 * 110.84449 * 207.67753 * 21 20 18 42 42 H 1.09003 * 111.02243 * 84.14231 * 21 20 18 43 43 H 1.09000 * 109.83384 * 261.84075 * 22 21 20 44 44 H 1.09001 * 109.83019 * 140.87181 * 22 21 20 45 45 H 1.09003 * 109.47054 * 59.99725 * 24 11 10 46 46 H 1.08994 * 109.47213 * 300.00018 * 25 24 11 47 47 H 1.09003 * 109.46926 * 60.00284 * 25 24 11 48 48 H 1.08994 * 109.47387 * 300.00295 * 26 25 24 49 49 H 1.08994 * 109.46974 * 179.97438 * 26 25 24 50 50 H 1.08996 * 109.47058 * 179.97438 * 27 26 25 51 51 H 1.08994 * 109.47168 * 59.99864 * 27 26 25 52 52 H 1.09003 * 109.47002 * 300.00215 * 28 27 26 53 53 H 1.08996 * 109.47008 * 180.02562 * 28 27 26 54 54 H 1.08995 * 109.47275 * 300.00159 * 29 24 11 55 55 H 1.09003 * 109.47146 * 59.99973 * 29 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0016 10 6 2.0580 -3.6568 0.0016 11 6 1.0637 -4.8197 0.0022 12 1 0.4979 -4.8134 0.9338 13 7 0.1438 -4.6762 -1.1289 14 6 -1.0786 -5.2418 -1.0792 15 8 -1.4189 -5.8651 -0.0960 16 6 -2.0226 -5.0996 -2.2452 17 6 -3.3312 -5.8284 -1.9338 18 6 -4.2899 -5.6834 -3.1174 19 1 -3.8182 -6.0433 -4.0318 20 6 -5.6023 -6.4608 -2.8450 21 6 -6.5951 -5.6925 -3.7592 22 6 -6.0613 -4.2461 -3.6800 23 8 -4.6907 -4.3125 -3.2695 24 6 1.8244 -6.1412 -0.1234 25 6 2.6187 -6.1501 -1.4311 26 6 3.3800 -7.4713 -1.5565 27 6 2.3860 -8.6346 -1.5556 28 6 1.5918 -8.6257 -0.2480 29 6 0.8303 -7.3041 -0.1222 30 1 -0.4850 0.8401 0.0004 31 1 0.3556 -2.3880 0.0016 32 1 2.6852 -3.7142 0.8912 33 1 2.6840 -3.7149 -0.8888 34 1 0.4160 -4.1778 -1.9152 35 1 -2.2279 -4.0434 -2.4198 36 1 -1.5678 -5.5332 -3.1359 37 1 -3.1263 -6.8845 -1.7591 38 1 -3.7859 -5.3943 -1.0432 39 1 -5.5123 -7.5030 -3.1512 40 1 -5.8935 -6.3848 -1.7973 41 1 -7.6103 -5.7533 -3.3668 42 1 -6.5536 -6.0659 -4.7824 43 1 -6.6388 -3.6782 -2.9505 44 1 -6.1316 -3.7719 -4.6589 45 1 2.5089 -6.2479 0.7181 46 1 1.9343 -6.0434 -2.2726 47 1 3.3271 -5.3216 -1.4315 48 1 4.0644 -7.5776 -0.7149 49 1 3.9454 -7.4778 -2.4882 50 1 2.9282 -9.5758 -1.6454 51 1 1.7016 -8.5283 -2.3972 52 1 2.2763 -8.7320 0.5936 53 1 0.8840 -9.4546 -0.2471 54 1 0.2647 -7.2976 0.8096 55 1 0.1455 -7.1976 -0.9635 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319649554.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:02 Heat of formation + Delta-G solvation = -127.232849 kcal Electronic energy + Delta-G solvation = -31055.411093 eV Core-core repulsion = 27090.076177 eV Total energy + Delta-G solvation = -3965.334916 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.39097 -40.35513 -39.11055 -37.15441 -35.27919 -34.52468 -33.08815 -32.91257 -32.01829 -31.55639 -29.59414 -28.50075 -25.84813 -25.06196 -23.94643 -22.95780 -22.59222 -22.11153 -21.40652 -21.06111 -20.33546 -19.20613 -17.98129 -17.87006 -17.18979 -16.81602 -16.62074 -16.40909 -16.03021 -15.63104 -15.32959 -15.23626 -15.03722 -14.82288 -14.78589 -14.55192 -14.38614 -14.06348 -13.77414 -13.67813 -13.42920 -13.20033 -12.89991 -12.82049 -12.75021 -12.63882 -12.57604 -12.33427 -12.24637 -12.07550 -11.98105 -11.92227 -11.82223 -11.75454 -11.73504 -11.65675 -11.29214 -11.14285 -10.95919 -10.74257 -10.60026 -10.42200 -9.78101 -8.99304 -7.93259 -5.22995 1.47666 1.50543 1.56720 1.80146 2.36574 2.56717 2.92367 3.40543 3.59180 3.64340 3.75117 3.80377 3.89587 3.94365 4.03009 4.14082 4.16444 4.19806 4.23806 4.30728 4.40047 4.47683 4.51520 4.53120 4.59042 4.62266 4.69454 4.72301 4.77619 4.79261 4.84312 4.84611 4.87133 4.92848 4.94250 5.03075 5.08868 5.14166 5.18287 5.23728 5.26704 5.29869 5.33888 5.35638 5.37058 5.45244 5.51134 5.56509 5.64056 5.73547 6.17691 6.26857 6.70171 7.34132 7.40437 8.08529 8.32280 9.29480 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.006362 B = 0.003998 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4399.837281 B = 7001.863484 C =10833.327965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.073 4.073 3 Si 0.973 3.027 4 H -0.275 1.275 5 H -0.298 1.298 6 H -0.280 1.280 7 C -0.246 4.246 8 H 0.078 0.922 9 N -0.742 5.742 10 C 0.145 3.855 11 C 0.153 3.847 12 H 0.052 0.948 13 N -0.705 5.705 14 C 0.511 3.489 15 O -0.576 6.576 16 C -0.132 4.132 17 C -0.092 4.092 18 C 0.077 3.923 19 H 0.086 0.914 20 C -0.150 4.150 21 C -0.147 4.147 22 C 0.039 3.961 23 O -0.409 6.409 24 C -0.084 4.084 25 C -0.111 4.111 26 C -0.114 4.114 27 C -0.114 4.114 28 C -0.117 4.117 29 C -0.095 4.095 30 H 0.250 0.750 31 H 0.373 0.627 32 H 0.029 0.971 33 H 0.045 0.955 34 H 0.406 0.594 35 H 0.085 0.915 36 H 0.116 0.884 37 H 0.088 0.912 38 H 0.048 0.952 39 H 0.103 0.897 40 H 0.071 0.929 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.063 0.937 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.060 0.940 47 H 0.063 0.937 48 H 0.063 0.937 49 H 0.070 0.930 50 H 0.072 0.928 51 H 0.057 0.943 52 H 0.061 0.939 53 H 0.061 0.939 54 H 0.040 0.960 55 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.947 -20.158 -10.342 23.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.265 4.265 3 Si 0.802 3.198 4 H -0.201 1.201 5 H -0.225 1.225 6 H -0.206 1.206 7 C -0.377 4.377 8 H 0.096 0.904 9 N -0.385 5.385 10 C 0.019 3.981 11 C 0.048 3.952 12 H 0.070 0.930 13 N -0.356 5.356 14 C 0.299 3.701 15 O -0.456 6.456 16 C -0.171 4.171 17 C -0.130 4.130 18 C 0.020 3.980 19 H 0.104 0.896 20 C -0.187 4.187 21 C -0.185 4.185 22 C -0.038 4.038 23 O -0.330 6.330 24 C -0.104 4.104 25 C -0.148 4.148 26 C -0.152 4.152 27 C -0.151 4.151 28 C -0.154 4.154 29 C -0.132 4.132 30 H 0.058 0.942 31 H 0.205 0.795 32 H 0.047 0.953 33 H 0.063 0.937 34 H 0.241 0.759 35 H 0.104 0.896 36 H 0.134 0.866 37 H 0.106 0.894 38 H 0.067 0.933 39 H 0.122 0.878 40 H 0.090 0.910 41 H 0.112 0.888 42 H 0.109 0.891 43 H 0.081 0.919 44 H 0.093 0.907 45 H 0.095 0.905 46 H 0.079 0.921 47 H 0.082 0.918 48 H 0.082 0.918 49 H 0.089 0.911 50 H 0.091 0.909 51 H 0.076 0.924 52 H 0.080 0.920 53 H 0.079 0.921 54 H 0.059 0.941 55 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.887 -20.312 -9.603 22.993 hybrid contribution -0.184 1.631 0.147 1.648 sum -5.071 -18.681 -9.456 21.543 Atomic orbital electron populations 1.69837 1.06688 1.26012 1.59331 1.25551 0.96264 1.01063 1.03630 0.85224 0.77148 0.79222 0.78210 1.20051 1.22473 1.20631 1.19593 0.91532 0.85192 1.41409 0.90397 1.42523 1.05598 1.00950 1.89455 1.21159 0.93607 0.84166 0.99200 1.21036 0.90101 0.94800 0.89274 0.93024 1.45914 1.14942 1.54447 1.20260 1.21032 0.82142 0.77678 0.89223 1.90646 1.76566 1.43157 1.35228 1.21609 0.95067 1.03559 0.96907 1.21390 0.93226 1.01128 0.97231 1.23161 0.95513 0.81565 0.97762 0.89585 1.23308 0.93643 1.00991 1.00791 1.23106 1.00417 0.93540 1.01420 1.23290 0.82049 0.98327 1.00098 1.88452 1.27985 1.26931 1.89631 1.21432 0.96845 0.92750 0.99381 1.21580 0.98632 0.98196 0.96393 1.21511 0.97657 0.93831 1.02183 1.21500 0.97901 0.98603 0.97094 1.21560 0.98878 0.96583 0.98406 1.21475 0.96693 0.94055 1.01021 0.94168 0.79477 0.95325 0.93683 0.75909 0.89611 0.86618 0.89373 0.93272 0.87821 0.91009 0.88763 0.89066 0.91880 0.90742 0.90491 0.92144 0.91843 0.91838 0.91086 0.90949 0.92445 0.91991 0.92067 0.94068 0.92931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.15 13.06 21.65 0.28 -59.87 16 2 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 3 Si 0.97 46.33 29.55 68.60 2.03 48.36 16 4 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 5 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 6 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 7 C -0.25 -13.63 9.99 84.03 0.84 -12.79 16 8 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 9 N -0.74 -37.55 5.43 -343.45 -1.87 -39.42 16 10 C 0.15 5.67 5.60 86.38 0.48 6.15 16 11 C 0.15 5.25 2.16 44.99 0.10 5.35 16 12 H 0.05 2.12 7.58 -2.39 -0.02 2.10 16 13 N -0.71 -22.80 3.65 -442.53 -1.61 -24.41 16 14 C 0.51 16.75 6.17 87.66 0.54 17.29 16 15 O -0.58 -22.00 13.09 -3.04 -0.04 -22.04 16 16 C -0.13 -3.49 5.61 29.85 0.17 -3.33 16 17 C -0.09 -2.27 4.25 30.59 0.13 -2.14 16 18 C 0.08 1.58 3.43 31.26 0.11 1.69 16 19 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 20 C -0.15 -2.34 6.57 32.05 0.21 -2.13 16 21 C -0.15 -1.97 7.02 31.85 0.22 -1.75 16 22 C 0.04 0.75 7.79 72.45 0.56 1.31 16 23 O -0.41 -10.82 10.69 -148.98 -1.59 -12.41 16 24 C -0.08 -2.28 2.07 -10.80 -0.02 -2.30 16 25 C -0.11 -2.55 4.70 30.59 0.14 -2.40 16 26 C -0.11 -2.13 5.92 30.60 0.18 -1.95 16 27 C -0.11 -2.04 5.92 30.60 0.18 -1.86 16 28 C -0.12 -2.45 5.92 30.61 0.18 -2.27 16 29 C -0.09 -2.56 3.73 30.61 0.11 -2.45 16 30 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 31 H 0.37 20.65 7.33 -92.71 -0.68 19.97 16 32 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.05 1.65 6.17 -2.39 -0.01 1.63 16 34 H 0.41 12.62 8.60 -92.71 -0.80 11.82 16 35 H 0.09 2.60 7.90 -2.39 -0.02 2.58 16 36 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.09 2.01 8.10 -2.39 -0.02 1.99 16 38 H 0.05 1.49 8.10 -2.38 -0.02 1.47 16 39 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.07 1.25 8.06 -2.39 -0.02 1.23 16 41 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.09 0.94 8.14 -2.39 -0.02 0.93 16 43 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 46 H 0.06 1.40 7.60 -2.39 -0.02 1.39 16 47 H 0.06 1.53 6.32 -2.39 -0.02 1.52 16 48 H 0.06 1.15 8.14 -2.39 -0.02 1.14 16 49 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 50 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 51 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 52 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 53 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 54 H 0.04 1.32 7.53 -2.39 -0.02 1.30 16 55 H 0.05 1.51 5.76 -2.39 -0.01 1.50 16 Total: -1.00 -69.75 416.49 1.19 -68.55 By element: Atomic # 1 Polarization: 49.16 SS G_CDS: -0.62 Total: 48.55 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: 4.61 Total: -7.30 kcal Atomic # 7 Polarization: -120.51 SS G_CDS: -3.20 Total: -123.70 kcal Atomic # 8 Polarization: -32.82 SS G_CDS: -1.63 Total: -34.45 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -69.75 1.19 -68.55 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319649554.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.681 kcal (2) G-P(sol) polarization free energy of solvation -69.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds