Wall clock time and date at job start Tue Mar 31 2020 21:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86802 * 119.99816 * 2 1 4 4 H 1.48496 * 109.46934 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47362 * 300.00530 * 3 2 1 6 6 H 1.48500 * 109.46805 * 60.00414 * 3 2 1 7 7 C 1.38812 * 119.99846 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99445 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00337 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00087 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47300 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47016 * 295.00165 * 11 10 9 13 13 N 1.46504 * 109.46680 * 54.99854 * 11 10 9 14 14 C 1.34776 * 119.99735 * 204.99794 * 13 11 10 15 15 O 1.21282 * 119.99940 * 0.02562 * 14 13 11 16 16 C 1.50698 * 120.00035 * 179.97438 * 14 13 11 17 17 C 1.53006 * 109.47184 * 180.02562 * 16 14 13 18 18 C 1.52997 * 109.47127 * 180.02562 * 17 16 14 19 19 H 1.09001 * 109.82238 * 305.57227 * 18 17 16 20 20 C 1.54385 * 109.83192 * 184.58891 * 18 17 16 21 21 C 1.55299 * 102.25193 * 219.13087 * 20 18 17 22 22 C 1.54947 * 100.94541 * 34.13759 * 21 20 18 23 23 O 1.43241 * 109.82955 * 66.45407 * 18 17 16 24 24 C 1.53002 * 109.47148 * 174.99789 * 11 10 9 25 25 C 1.52998 * 109.47073 * 300.00071 * 24 11 10 26 26 C 1.53001 * 109.46829 * 180.02562 * 25 24 11 27 27 C 1.52993 * 109.47443 * 59.99633 * 26 25 24 28 28 C 1.52996 * 109.47372 * 300.00397 * 27 26 25 29 29 C 1.53000 * 109.46660 * 179.97438 * 24 11 10 30 30 H 0.96996 * 119.99873 * 359.97438 * 1 2 3 31 31 H 0.97005 * 120.00192 * 0.02562 * 9 7 2 32 32 H 1.08995 * 109.47339 * 59.99863 * 10 9 7 33 33 H 1.08996 * 109.47165 * 300.00065 * 10 9 7 34 34 H 0.96998 * 120.00303 * 24.99968 * 13 11 10 35 35 H 1.09001 * 109.46665 * 60.00498 * 16 14 13 36 36 H 1.08993 * 109.47304 * 300.00054 * 16 14 13 37 37 H 1.09001 * 109.46801 * 300.00442 * 17 16 14 38 38 H 1.09001 * 109.46998 * 60.00038 * 17 16 14 39 39 H 1.09003 * 110.84020 * 337.32150 * 20 18 17 40 40 H 1.08999 * 110.84312 * 100.93539 * 20 18 17 41 41 H 1.09000 * 111.12947 * 276.21359 * 21 20 18 42 42 H 1.09007 * 111.16049 * 152.06390 * 21 20 18 43 43 H 1.08997 * 110.30946 * 204.64382 * 22 21 20 44 44 H 1.08998 * 110.39878 * 82.50977 * 22 21 20 45 45 H 1.09000 * 109.47041 * 60.00275 * 24 11 10 46 46 H 1.09000 * 109.47354 * 300.00013 * 25 24 11 47 47 H 1.09001 * 109.47101 * 60.00313 * 25 24 11 48 48 H 1.09004 * 109.46879 * 299.99453 * 26 25 24 49 49 H 1.08994 * 109.47000 * 180.02562 * 26 25 24 50 50 H 1.09002 * 109.47333 * 179.97438 * 27 26 25 51 51 H 1.09000 * 109.46781 * 60.00262 * 27 26 25 52 52 H 1.09000 * 109.47057 * 299.99696 * 28 27 26 53 53 H 1.08999 * 109.47646 * 180.02562 * 28 27 26 54 54 H 1.09002 * 109.47292 * 300.00245 * 29 24 11 55 55 H 1.09000 * 109.47137 * 60.00373 * 29 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3966 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 6 1.0639 -4.8198 -0.0012 12 1 0.4973 -4.8139 0.9300 13 7 0.1449 -4.6758 -1.1330 14 6 -1.0796 -5.2367 -1.0823 15 8 -1.4207 -5.8602 -0.0995 16 6 -2.0252 -5.0882 -2.2462 17 6 -3.3362 -5.8127 -1.9339 18 6 -4.2960 -5.6624 -3.1158 19 1 -4.4240 -4.6070 -3.3562 20 6 -5.6617 -6.2909 -2.7647 21 6 -6.0652 -6.9704 -4.1016 22 6 -4.6798 -7.4111 -4.6376 23 8 -3.7780 -6.3606 -4.2542 24 6 1.8249 -6.1412 -0.1270 25 6 2.6201 -6.1493 -1.4340 26 6 3.3805 -7.4710 -1.5600 27 6 2.3860 -8.6335 -1.5609 28 6 1.5907 -8.6253 -0.2539 29 6 0.8306 -7.3041 -0.1270 30 1 -0.4850 0.8400 0.0004 31 1 0.3556 -2.3881 -0.0005 32 1 2.6848 -3.7145 0.8894 33 1 2.6848 -3.7145 -0.8905 34 1 0.4176 -4.1768 -1.9188 35 1 -1.5738 -5.5216 -3.1386 36 1 -2.2268 -4.0309 -2.4179 37 1 -3.1348 -6.8700 -1.7619 38 1 -3.7874 -5.3789 -1.0415 39 1 -5.5558 -7.0299 -1.9704 40 1 -6.3826 -5.5220 -2.4871 41 1 -6.5394 -6.2582 -4.7769 42 1 -6.7105 -7.8313 -3.9264 43 1 -4.7076 -7.5084 -5.7229 44 1 -4.3783 -8.3539 -4.1814 45 1 2.5087 -6.2482 0.7151 46 1 1.9363 -6.0422 -2.2761 47 1 3.3284 -5.3208 -1.4335 48 1 4.0644 -7.5784 -0.7180 49 1 3.9474 -7.4766 -2.4909 50 1 2.9277 -9.5751 -1.6511 51 1 1.7022 -8.5261 -2.4029 52 1 2.2744 -8.7328 0.5882 53 1 0.8824 -9.4539 -0.2542 54 1 0.2644 -7.2980 0.8044 55 1 0.1465 -7.1972 -0.9688 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319649555.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:05 Heat of formation + Delta-G solvation = -127.487915 kcal Electronic energy + Delta-G solvation = -31132.988960 eV Core-core repulsion = 27167.642983 eV Total energy + Delta-G solvation = -3965.345976 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.40149 -40.39316 -39.11879 -37.16195 -35.28198 -34.46820 -33.08951 -32.90323 -32.02316 -31.57853 -29.58794 -28.50756 -25.86338 -25.09012 -23.96159 -22.97317 -22.66971 -22.02783 -21.40157 -21.05855 -20.34682 -19.20812 -17.99481 -17.91484 -17.19040 -16.86396 -16.68915 -16.41233 -15.99285 -15.44569 -15.38135 -15.15366 -15.04827 -14.83977 -14.75746 -14.62386 -14.35773 -14.25247 -13.78865 -13.53291 -13.44597 -13.21160 -12.94013 -12.91332 -12.81598 -12.62564 -12.57630 -12.25743 -12.20013 -12.04026 -11.97671 -11.92642 -11.83883 -11.80624 -11.74378 -11.65021 -11.31060 -11.16111 -10.98191 -10.75911 -10.61459 -10.43603 -9.78977 -8.98925 -7.93697 -5.22803 1.48295 1.48850 1.58734 1.79863 2.35756 2.56548 2.94126 3.40550 3.60641 3.62969 3.73119 3.79891 3.88770 3.94609 4.01791 4.12929 4.16448 4.19841 4.25738 4.29290 4.36647 4.46180 4.49850 4.52000 4.60226 4.66048 4.68044 4.70791 4.75912 4.79319 4.83073 4.84112 4.89293 4.92796 4.95761 4.98188 5.07340 5.13063 5.16957 5.22674 5.24966 5.28338 5.33879 5.35009 5.35356 5.43672 5.51742 5.54657 5.62271 5.72815 6.13991 6.27308 6.69517 7.34587 7.39769 8.08308 8.32595 9.29539 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.007454 B = 0.003604 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3755.344955 B = 7766.481030 C =10769.499858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.073 4.073 3 Si 0.972 3.028 4 H -0.266 1.266 5 H -0.293 1.293 6 H -0.297 1.297 7 C -0.241 4.241 8 H 0.077 0.923 9 N -0.742 5.742 10 C 0.145 3.855 11 C 0.153 3.847 12 H 0.054 0.946 13 N -0.705 5.705 14 C 0.511 3.489 15 O -0.576 6.576 16 C -0.131 4.131 17 C -0.101 4.101 18 C 0.078 3.922 19 H 0.082 0.918 20 C -0.151 4.151 21 C -0.149 4.149 22 C 0.040 3.960 23 O -0.400 6.400 24 C -0.084 4.084 25 C -0.111 4.111 26 C -0.114 4.114 27 C -0.114 4.114 28 C -0.117 4.117 29 C -0.094 4.094 30 H 0.250 0.750 31 H 0.374 0.626 32 H 0.030 0.970 33 H 0.045 0.955 34 H 0.406 0.594 35 H 0.105 0.895 36 H 0.095 0.905 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.099 0.901 43 H 0.095 0.905 44 H 0.060 0.940 45 H 0.079 0.921 46 H 0.057 0.943 47 H 0.065 0.935 48 H 0.065 0.935 49 H 0.070 0.930 50 H 0.073 0.927 51 H 0.053 0.947 52 H 0.064 0.936 53 H 0.059 0.941 54 H 0.041 0.959 55 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.198 -19.661 -9.432 22.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.266 4.266 3 Si 0.801 3.199 4 H -0.190 1.190 5 H -0.220 1.220 6 H -0.225 1.225 7 C -0.373 4.373 8 H 0.095 0.905 9 N -0.385 5.385 10 C 0.019 3.981 11 C 0.048 3.952 12 H 0.072 0.928 13 N -0.356 5.356 14 C 0.299 3.701 15 O -0.456 6.456 16 C -0.171 4.171 17 C -0.139 4.139 18 C 0.021 3.979 19 H 0.100 0.900 20 C -0.189 4.189 21 C -0.187 4.187 22 C -0.036 4.036 23 O -0.320 6.320 24 C -0.104 4.104 25 C -0.148 4.148 26 C -0.151 4.151 27 C -0.151 4.151 28 C -0.154 4.154 29 C -0.132 4.132 30 H 0.059 0.941 31 H 0.206 0.794 32 H 0.048 0.952 33 H 0.063 0.937 34 H 0.241 0.759 35 H 0.123 0.877 36 H 0.113 0.887 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.111 0.889 41 H 0.102 0.898 42 H 0.117 0.883 43 H 0.113 0.887 44 H 0.078 0.922 45 H 0.097 0.903 46 H 0.076 0.924 47 H 0.083 0.917 48 H 0.084 0.916 49 H 0.089 0.911 50 H 0.091 0.909 51 H 0.072 0.928 52 H 0.082 0.918 53 H 0.077 0.923 54 H 0.060 0.940 55 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.055 -19.958 -8.828 22.401 hybrid contribution -0.161 1.508 0.190 1.528 sum -5.215 -18.450 -8.638 21.029 Atomic orbital electron populations 1.69834 1.06588 1.25851 1.59538 1.25530 0.96316 1.00966 1.03758 0.85096 0.78296 0.79980 0.76499 1.18997 1.22001 1.22493 1.19649 0.91517 0.85151 1.41002 0.90462 1.42525 1.05641 1.00909 1.89396 1.21152 0.93587 0.84155 0.99224 1.21040 0.90138 0.94724 0.89292 0.92817 1.45919 1.14810 1.54574 1.20262 1.21031 0.82263 0.77678 0.89092 1.90643 1.76744 1.42981 1.35264 1.21600 0.95407 1.03402 0.96680 1.21610 0.94016 1.00714 0.97599 1.22829 0.92793 0.96905 0.85396 0.89989 1.23187 0.95755 1.01156 0.98787 1.23256 0.97377 1.01867 0.96179 1.23560 0.88520 0.90526 1.00952 1.88413 1.47802 1.48137 1.47620 1.21434 0.96822 0.92796 0.99369 1.21581 0.98625 0.98231 0.96387 1.21506 0.97613 0.93770 1.02248 1.21498 0.97891 0.98729 0.97028 1.21541 0.98878 0.96562 0.98442 1.21448 0.96710 0.94171 1.00881 0.94147 0.79387 0.95230 0.93749 0.75915 0.87680 0.88710 0.91989 0.91252 0.90352 0.88893 0.89772 0.88276 0.88705 0.92203 0.90303 0.92419 0.91666 0.91640 0.91116 0.90883 0.92809 0.91751 0.92256 0.93972 0.93339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.87 13.06 21.65 0.28 -58.58 16 2 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 3 Si 0.97 45.82 29.55 68.60 2.03 47.84 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 6 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 7 C -0.24 -13.22 9.99 84.03 0.84 -12.38 16 8 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 9 N -0.74 -36.92 5.43 -343.46 -1.87 -38.78 16 10 C 0.15 5.62 5.60 86.38 0.48 6.11 16 11 C 0.15 5.24 2.16 44.99 0.10 5.34 16 12 H 0.05 2.18 7.58 -2.39 -0.02 2.16 16 13 N -0.71 -22.87 3.64 -442.51 -1.61 -24.48 16 14 C 0.51 16.86 6.18 87.66 0.54 17.40 16 15 O -0.58 -22.12 13.11 -3.04 -0.04 -22.16 16 16 C -0.13 -3.53 5.61 29.85 0.17 -3.36 16 17 C -0.10 -2.54 4.07 30.60 0.12 -2.41 16 18 C 0.08 1.64 3.52 31.06 0.11 1.75 16 19 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 20 C -0.15 -2.41 6.54 31.85 0.21 -2.20 16 21 C -0.15 -1.89 7.15 32.05 0.23 -1.66 16 22 C 0.04 0.65 7.78 72.65 0.57 1.21 16 23 O -0.40 -9.08 10.64 -148.98 -1.58 -10.67 16 24 C -0.08 -2.33 2.07 -10.79 -0.02 -2.35 16 25 C -0.11 -2.64 4.70 30.59 0.14 -2.50 16 26 C -0.11 -2.22 5.92 30.59 0.18 -2.04 16 27 C -0.11 -2.20 5.92 30.59 0.18 -2.02 16 28 C -0.12 -2.58 5.92 30.58 0.18 -2.40 16 29 C -0.09 -2.65 3.73 30.58 0.11 -2.54 16 30 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 31 H 0.37 20.23 7.33 -92.70 -0.68 19.55 16 32 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.04 1.62 6.17 -2.39 -0.01 1.60 16 34 H 0.41 12.67 8.60 -92.71 -0.80 11.87 16 35 H 0.10 2.59 7.88 -2.39 -0.02 2.57 16 36 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 37 H 0.06 1.66 8.10 -2.39 -0.02 1.64 16 38 H 0.07 1.87 8.10 -2.39 -0.02 1.85 16 39 H 0.08 1.27 7.85 -2.39 -0.02 1.25 16 40 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 43 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 46 H 0.06 1.42 7.60 -2.39 -0.02 1.40 16 47 H 0.06 1.60 6.32 -2.39 -0.02 1.59 16 48 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 49 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 50 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 51 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 52 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 53 H 0.06 1.26 8.14 -2.39 -0.02 1.25 16 54 H 0.04 1.38 7.53 -2.39 -0.02 1.36 16 55 H 0.05 1.49 5.77 -2.39 -0.01 1.47 16 Total: -1.00 -67.12 416.25 1.21 -65.91 By element: Atomic # 1 Polarization: 49.28 SS G_CDS: -0.62 Total: 48.66 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: 4.61 Total: -7.75 kcal Atomic # 7 Polarization: -118.65 SS G_CDS: -3.19 Total: -121.84 kcal Atomic # 8 Polarization: -31.20 SS G_CDS: -1.62 Total: -32.83 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.84 kcal Total: -67.12 1.21 -65.91 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319649555.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.574 kcal (2) G-P(sol) polarization free energy of solvation -67.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds