Wall clock time and date at job start Tue Mar 31 2020 21:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99779 * 2 1 4 4 H 1.48492 * 109.47643 * 270.00542 * 3 2 1 5 5 H 1.48504 * 109.47166 * 30.00838 * 3 2 1 6 6 H 1.48501 * 109.46972 * 150.00552 * 3 2 1 7 7 C 1.38811 * 120.00365 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99641 * 359.97438 * 7 2 1 9 9 N 1.36932 * 120.00369 * 179.97438 * 7 2 1 10 10 C 1.46495 * 120.00314 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47372 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.47262 * 65.00289 * 11 10 9 13 13 N 1.46504 * 109.47062 * 305.00497 * 11 10 9 14 14 C 1.34767 * 119.99947 * 155.00300 * 13 11 10 15 15 O 1.21276 * 120.00341 * 359.97438 * 14 13 11 16 16 C 1.50710 * 120.00061 * 179.97438 * 14 13 11 17 17 C 1.52991 * 109.47106 * 179.97438 * 16 14 13 18 18 H 1.08998 * 109.52532 * 54.87385 * 17 16 14 19 19 C 1.53183 * 109.52119 * 175.00067 * 17 16 14 20 20 C 1.53176 * 109.03838 * 176.88592 * 19 17 16 21 21 C 1.53093 * 109.16348 * 303.01796 * 20 19 17 22 22 O 1.42904 * 109.42351 * 57.60111 * 21 20 19 23 23 C 1.42902 * 114.09961 * 298.86177 * 22 21 20 24 24 C 1.52997 * 109.47286 * 185.00433 * 11 10 9 25 25 C 1.53001 * 109.47232 * 299.99869 * 24 11 10 26 26 C 1.52994 * 109.47583 * 180.02562 * 25 24 11 27 27 C 1.53001 * 109.47197 * 59.99970 * 26 25 24 28 28 C 1.53001 * 109.46878 * 300.00461 * 27 26 25 29 29 C 1.52994 * 109.47583 * 59.99775 * 28 27 26 30 30 H 0.96994 * 119.99975 * 359.97438 * 1 2 3 31 31 H 0.97004 * 119.99830 * 0.02562 * 9 7 2 32 32 H 1.09005 * 109.47180 * 60.00204 * 10 9 7 33 33 H 1.08998 * 109.47351 * 300.00400 * 10 9 7 34 34 H 0.97006 * 119.99889 * 334.99288 * 13 11 10 35 35 H 1.09002 * 109.46674 * 59.99210 * 16 14 13 36 36 H 1.09003 * 109.46920 * 300.00135 * 16 14 13 37 37 H 1.09002 * 109.54436 * 57.01482 * 19 17 16 38 38 H 1.09000 * 109.61273 * 296.79675 * 19 17 16 39 39 H 1.09004 * 109.52469 * 183.11228 * 20 19 17 40 40 H 1.09001 * 109.52097 * 62.92137 * 20 19 17 41 41 H 1.09002 * 109.48198 * 177.59219 * 21 20 19 42 42 H 1.08999 * 109.48029 * 297.61833 * 21 20 19 43 43 H 1.09000 * 109.47314 * 301.15801 * 23 22 21 44 44 H 1.09001 * 109.47997 * 181.12766 * 23 22 21 45 45 H 1.09002 * 109.47604 * 59.99680 * 24 11 10 46 46 H 1.09009 * 109.46986 * 300.00561 * 25 24 11 47 47 H 1.09003 * 109.47249 * 59.99820 * 25 24 11 48 48 H 1.09001 * 109.46826 * 299.99935 * 26 25 24 49 49 H 1.09002 * 109.47476 * 180.02562 * 26 25 24 50 50 H 1.09002 * 109.47260 * 180.02562 * 27 26 25 51 51 H 1.09002 * 109.47060 * 59.99723 * 27 26 25 52 52 H 1.09009 * 109.46986 * 299.99321 * 28 27 26 53 53 H 1.09006 * 109.46902 * 180.02562 * 28 27 26 54 54 H 1.09002 * 109.47476 * 179.97438 * 29 28 27 55 55 H 1.09001 * 109.46826 * 60.00065 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4476 2.6527 0.7002 6 1 3.5478 1.4402 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1122 -2.4707 -0.0011 11 6 5.6164 -2.1911 -0.0011 12 1 5.8943 -1.6978 0.9303 13 7 5.9518 -1.3229 -1.1325 14 6 7.0496 -0.5430 -1.0811 15 8 7.7598 -0.5595 -0.0982 16 6 7.3949 0.3498 -2.2452 17 6 8.6774 1.1229 -1.9321 18 1 9.4703 0.4224 -1.6699 19 6 9.0980 1.9356 -3.1606 20 6 10.3376 2.7647 -2.8107 21 6 10.0232 3.6545 -1.6053 22 8 9.6089 2.8387 -0.5076 23 6 8.4272 2.0762 -0.7606 24 6 6.3805 -3.5107 -0.1269 25 6 6.0303 -4.4175 1.0547 26 6 6.7948 -5.7368 0.9293 27 6 8.2990 -5.4567 0.9296 28 6 8.6491 -4.5499 -0.2519 29 6 7.8846 -3.2306 -0.1265 30 1 -0.4850 0.8400 0.0004 31 1 3.8646 -0.3620 -0.0007 32 1 3.8486 -3.0425 -0.8909 33 1 3.8492 -3.0422 0.8891 34 1 5.3836 -1.3095 -1.9186 35 1 6.5801 1.0529 -2.4180 36 1 7.5453 -0.2583 -3.1373 37 1 8.2854 2.6004 -3.4537 38 1 9.3315 1.2602 -3.9837 39 1 10.6111 3.3880 -3.6621 40 1 11.1644 2.0981 -2.5656 41 1 10.9148 4.2155 -1.3252 42 1 9.2236 4.3484 -1.8644 43 1 7.6065 2.7493 -1.0087 44 1 8.1690 1.5001 0.1280 45 1 6.1026 -4.0041 -1.0583 46 1 6.3081 -3.9240 1.9862 47 1 4.9587 -4.6167 1.0547 48 1 6.5173 -6.2303 -0.0021 49 1 6.5450 -6.3829 1.7708 50 1 8.8436 -6.3966 0.8398 51 1 8.5764 -4.9631 1.8610 52 1 8.3717 -5.0435 -1.1834 53 1 9.7208 -4.3507 -0.2520 54 1 8.1344 -2.5844 -0.9681 55 1 8.1621 -2.7371 0.8049 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319669397.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:39 Heat of formation + Delta-G solvation = -128.653639 kcal Electronic energy + Delta-G solvation = -31589.182230 eV Core-core repulsion = 27623.785704 eV Total energy + Delta-G solvation = -3965.396526 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.51929 -40.28895 -39.10604 -37.33966 -35.47632 -35.26455 -33.41617 -33.00317 -32.29971 -31.52716 -29.23655 -28.19342 -25.96422 -25.40134 -24.01407 -23.49866 -22.91537 -21.84294 -21.31482 -20.96755 -20.57214 -19.73536 -17.89430 -17.42802 -17.26003 -16.98875 -16.89656 -16.39114 -15.98457 -15.75285 -15.43302 -15.22248 -15.10607 -14.97990 -14.92095 -14.84050 -14.54154 -14.04892 -13.83471 -13.63515 -13.55549 -13.51130 -13.14966 -12.94264 -12.93542 -12.87190 -12.55634 -12.34657 -12.17387 -12.12274 -11.98186 -11.94630 -11.88531 -11.82445 -11.70250 -11.38881 -11.25621 -11.14289 -11.02793 -10.81067 -10.59799 -10.38791 -9.85199 -9.32010 -8.04499 -5.37594 1.32759 1.37222 1.43351 1.72714 2.26388 2.44704 2.96443 3.27387 3.44506 3.66261 3.76711 3.80478 3.82153 3.88677 3.95907 4.02702 4.06440 4.10794 4.26706 4.27698 4.36413 4.46475 4.49764 4.52945 4.55709 4.62231 4.65936 4.68809 4.69227 4.72698 4.74123 4.79664 4.84564 4.92407 4.96746 5.01562 5.08286 5.10379 5.14106 5.20803 5.24294 5.30387 5.31884 5.35428 5.41351 5.43052 5.47640 5.60194 5.69171 5.75412 6.19142 6.27039 6.64597 7.05507 7.35067 7.80956 7.99611 9.16967 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.006494 B = 0.004912 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4310.414135 B = 5698.733527 C = 9428.832479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.057 4.057 3 Si 0.947 3.053 4 H -0.267 1.267 5 H -0.299 1.299 6 H -0.267 1.267 7 C -0.231 4.231 8 H 0.062 0.938 9 N -0.755 5.755 10 C 0.150 3.850 11 C 0.151 3.849 12 H 0.061 0.939 13 N -0.715 5.715 14 C 0.506 3.494 15 O -0.565 6.565 16 C -0.134 4.134 17 C -0.096 4.096 18 H 0.071 0.929 19 C -0.116 4.116 20 C -0.151 4.151 21 C 0.046 3.954 22 O -0.407 6.407 23 C 0.060 3.940 24 C -0.081 4.081 25 C -0.117 4.117 26 C -0.113 4.113 27 C -0.117 4.117 28 C -0.116 4.116 29 C -0.093 4.093 30 H 0.258 0.742 31 H 0.364 0.636 32 H 0.043 0.957 33 H 0.040 0.960 34 H 0.410 0.590 35 H 0.104 0.896 36 H 0.125 0.875 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.095 0.905 40 H 0.065 0.935 41 H 0.103 0.897 42 H 0.054 0.946 43 H 0.046 0.954 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.051 0.949 47 H 0.065 0.935 48 H 0.068 0.932 49 H 0.068 0.932 50 H 0.072 0.928 51 H 0.052 0.948 52 H 0.066 0.934 53 H 0.059 0.941 54 H 0.051 0.949 55 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.356 -2.810 -8.568 25.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.248 4.248 3 Si 0.775 3.225 4 H -0.192 1.192 5 H -0.226 1.226 6 H -0.193 1.193 7 C -0.362 4.362 8 H 0.080 0.920 9 N -0.401 5.401 10 C 0.023 3.977 11 C 0.045 3.955 12 H 0.079 0.921 13 N -0.367 5.367 14 C 0.294 3.706 15 O -0.444 6.444 16 C -0.173 4.173 17 C -0.115 4.115 18 H 0.089 0.911 19 C -0.154 4.154 20 C -0.188 4.188 21 C -0.030 4.030 22 O -0.327 6.327 23 C -0.017 4.017 24 C -0.101 4.101 25 C -0.155 4.155 26 C -0.150 4.150 27 C -0.155 4.155 28 C -0.153 4.153 29 C -0.131 4.131 30 H 0.067 0.933 31 H 0.197 0.803 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.246 0.754 35 H 0.122 0.878 36 H 0.143 0.857 37 H 0.091 0.909 38 H 0.105 0.895 39 H 0.114 0.886 40 H 0.084 0.916 41 H 0.121 0.879 42 H 0.072 0.928 43 H 0.064 0.936 44 H 0.101 0.899 45 H 0.099 0.901 46 H 0.070 0.930 47 H 0.084 0.916 48 H 0.087 0.913 49 H 0.087 0.913 50 H 0.091 0.909 51 H 0.070 0.930 52 H 0.085 0.915 53 H 0.077 0.923 54 H 0.069 0.931 55 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 23.748 -2.931 -7.699 25.137 hybrid contribution -0.689 1.201 -0.064 1.386 sum 23.059 -1.730 -7.763 24.392 Atomic orbital electron populations 1.69862 1.06965 1.26583 1.59727 1.25381 0.95932 1.00755 1.02779 0.85536 0.78098 0.80391 0.78483 1.19240 1.22585 1.19280 1.19034 0.82514 0.93553 1.41068 0.92009 1.42684 1.02499 1.03959 1.90972 1.21119 0.88908 0.87843 0.99802 1.21103 0.93408 0.91273 0.89689 0.92090 1.46056 1.27085 1.42966 1.20544 1.21125 0.80097 0.80019 0.89388 1.90677 1.51025 1.67585 1.35128 1.21767 0.99398 0.98833 0.97335 1.21416 0.96925 0.97091 0.96075 0.91068 1.21685 0.98122 0.98971 0.96586 1.22159 0.98390 0.99465 0.98827 1.22839 1.00446 0.92610 0.87090 1.87929 1.44943 1.60167 1.39640 1.22787 0.86524 0.92826 0.99551 1.21420 0.95169 0.93713 0.99770 1.21617 1.00396 0.96091 0.97364 1.21488 0.94840 0.96260 1.02417 1.21530 0.96213 0.99607 0.98133 1.21541 0.99410 0.95479 0.98899 1.21457 0.93776 0.96729 1.01135 0.93331 0.80278 0.93937 0.94163 0.75411 0.87812 0.85657 0.90879 0.89494 0.88607 0.91624 0.87932 0.92758 0.93604 0.89924 0.90106 0.93009 0.91627 0.91321 0.91320 0.90895 0.92961 0.91512 0.92262 0.93052 0.93787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.89 13.97 21.65 0.30 -61.58 16 2 C -0.06 -3.28 5.50 84.86 0.47 -2.81 16 3 Si 0.95 45.16 27.74 68.60 1.90 47.06 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 5 H -0.30 -14.64 7.11 99.48 0.71 -13.94 16 6 H -0.27 -12.14 6.52 99.48 0.65 -11.49 16 7 C -0.23 -12.77 10.47 84.03 0.88 -11.89 16 8 H 0.06 3.73 8.06 -2.91 -0.02 3.70 16 9 N -0.76 -33.86 5.24 -343.46 -1.80 -35.66 16 10 C 0.15 5.29 5.31 86.38 0.46 5.75 16 11 C 0.15 4.47 2.00 44.99 0.09 4.56 16 12 H 0.06 2.16 7.58 -2.39 -0.02 2.14 16 13 N -0.72 -18.85 4.41 -442.53 -1.95 -20.80 16 14 C 0.51 13.31 5.92 87.66 0.52 13.83 16 15 O -0.56 -18.43 11.11 -3.02 -0.03 -18.46 16 16 C -0.13 -2.52 5.18 29.85 0.15 -2.36 16 17 C -0.10 -1.96 2.03 -10.70 -0.02 -1.98 16 18 H 0.07 1.70 7.95 -2.39 -0.02 1.68 16 19 C -0.12 -1.68 5.31 30.71 0.16 -1.52 16 20 C -0.15 -2.15 6.14 30.68 0.19 -1.96 16 21 C 0.05 0.84 6.84 72.01 0.49 1.33 16 22 O -0.41 -10.95 10.77 -148.98 -1.60 -12.56 16 23 C 0.06 1.56 5.84 72.01 0.42 1.98 16 24 C -0.08 -1.97 1.96 -10.79 -0.02 -1.99 16 25 C -0.12 -2.73 4.85 30.59 0.15 -2.58 16 26 C -0.11 -2.12 5.92 30.59 0.18 -1.94 16 27 C -0.12 -2.16 5.92 30.59 0.18 -1.98 16 28 C -0.12 -2.29 5.92 30.59 0.18 -2.11 16 29 C -0.09 -2.30 3.73 30.59 0.11 -2.18 16 30 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 31 H 0.36 16.08 5.20 -92.71 -0.48 15.60 16 32 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 33 H 0.04 1.48 6.71 -2.39 -0.02 1.46 16 34 H 0.41 9.72 8.60 -92.70 -0.80 8.92 16 35 H 0.10 1.81 8.14 -2.39 -0.02 1.80 16 36 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.08 2.66 6.04 -2.39 -0.01 2.64 16 45 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 47 H 0.07 1.59 6.54 -2.39 -0.02 1.58 16 48 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 49 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 50 H 0.07 1.11 8.14 -2.39 -0.02 1.10 16 51 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 52 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 53 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 54 H 0.05 1.33 5.77 -2.39 -0.01 1.31 16 55 H 0.04 1.31 7.53 -2.39 -0.02 1.29 16 Total: -1.00 -70.29 407.66 0.94 -69.35 By element: Atomic # 1 Polarization: 40.98 SS G_CDS: -0.48 Total: 40.51 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: 4.60 Total: -7.86 kcal Atomic # 7 Polarization: -114.59 SS G_CDS: -3.45 Total: -118.04 kcal Atomic # 8 Polarization: -29.38 SS G_CDS: -1.64 Total: -31.02 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.90 Total: 47.06 kcal Total: -70.29 0.94 -69.35 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319669397.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.304 kcal (2) G-P(sol) polarization free energy of solvation -70.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds