Wall clock time and date at job start Tue Mar 31 2020 20:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.47057 * 125.40562 * 2 1 4 4 C 1.54109 * 103.85937 * 179.97438 * 3 2 1 5 5 H 1.08995 * 110.54503 * 241.26060 * 4 3 2 6 6 C 1.50700 * 110.54758 * 118.59284 * 4 3 2 7 7 O 1.21278 * 120.00548 * 259.99836 * 6 4 3 8 8 N 1.34782 * 119.99764 * 80.00029 * 6 4 3 9 9 C 1.46499 * 120.00273 * 179.97438 * 8 6 4 10 10 C 1.52992 * 109.47658 * 180.02562 * 9 8 6 11 11 H 1.08998 * 109.46862 * 305.00512 * 10 9 8 12 12 C 1.53006 * 109.47223 * 64.99659 * 10 9 8 13 13 C 1.52997 * 109.47164 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.46978 * 299.99874 * 13 12 10 15 15 H 1.08992 * 109.47056 * 300.00064 * 14 13 12 16 16 C 1.52997 * 109.46978 * 180.02562 * 14 13 12 17 17 N 1.46507 * 109.47321 * 65.00089 * 16 14 13 18 18 C 1.36929 * 120.00158 * 179.97438 * 17 16 14 19 19 H 1.07995 * 120.00290 * 0.02562 * 18 17 16 20 20 C 1.38810 * 119.99945 * 180.02562 * 18 17 16 21 21 N 1.31625 * 120.00402 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 119.99981 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47453 * 89.99786 * 22 20 18 24 24 H 1.48500 * 109.47309 * 209.99939 * 22 20 18 25 25 H 1.48498 * 109.47000 * 329.99867 * 22 20 18 26 26 C 1.52996 * 109.46891 * 60.00410 * 14 13 12 27 27 C 1.52997 * 109.47482 * 184.99947 * 10 9 8 28 28 N 1.47052 * 103.86365 * 0.02562 * 4 3 2 29 29 C 1.33940 * 125.41502 * 180.02562 * 2 1 3 30 30 O 1.21594 * 123.04198 * 0.02562 * 29 2 1 31 31 H 1.09004 * 109.46982 * 89.99949 * 1 2 3 32 32 H 1.09000 * 109.46791 * 209.99471 * 1 2 3 33 33 H 1.08997 * 109.47428 * 330.00054 * 1 2 3 34 34 H 1.08991 * 110.54936 * 61.40609 * 3 2 1 35 35 H 1.08996 * 110.67167 * 298.65305 * 3 2 1 36 36 H 0.97002 * 119.99790 * 359.97438 * 8 6 4 37 37 H 1.09001 * 109.46952 * 59.99319 * 9 8 6 38 38 H 1.09004 * 109.46722 * 300.00399 * 9 8 6 39 39 H 1.09001 * 109.47002 * 60.00080 * 12 10 9 40 40 H 1.09000 * 109.47050 * 300.00346 * 12 10 9 41 41 H 1.09002 * 109.47045 * 180.02562 * 13 12 10 42 42 H 1.09001 * 109.47375 * 59.99966 * 13 12 10 43 43 H 1.08994 * 109.47445 * 185.00212 * 16 14 13 44 44 H 1.09000 * 109.47459 * 305.00519 * 16 14 13 45 45 H 0.97003 * 119.99307 * 0.02562 * 17 16 14 46 46 H 0.96994 * 120.00179 * 180.02562 * 21 20 18 47 47 H 1.09004 * 109.47368 * 179.97438 * 26 14 13 48 48 H 1.09001 * 109.47372 * 59.99964 * 26 14 13 49 49 H 1.09002 * 109.47153 * 59.99783 * 27 10 9 50 50 H 1.09001 * 109.46832 * 299.99974 * 27 10 9 51 51 H 0.96992 * 125.41178 * 180.02562 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3170 1.1986 0.0000 4 6 3.7504 0.6326 0.0007 5 1 4.2861 0.9489 0.8957 6 6 4.4908 1.0662 -1.2382 7 8 4.6031 0.3047 -2.1754 8 7 5.0284 2.3004 -1.3047 9 6 5.7487 2.7218 -2.5087 10 6 6.2549 4.1539 -2.3254 11 1 5.4189 4.8046 -2.0689 12 6 7.2916 4.1883 -1.2006 13 6 7.7973 5.6206 -1.0168 14 6 8.4401 6.1053 -2.3179 15 1 9.2762 5.4549 -2.5744 16 6 8.9464 7.5374 -2.1339 17 7 10.0236 7.5508 -1.1410 18 6 10.6352 8.7304 -0.8103 19 1 10.3234 9.6509 -1.2811 20 6 11.6562 8.7429 0.1301 21 7 12.2439 9.8769 0.4484 22 14 12.1962 7.1506 0.9438 23 1 13.2792 6.5271 0.1416 24 1 12.6967 7.4387 2.3119 25 1 11.0418 6.2199 1.0249 26 6 7.4034 6.0710 -3.4426 27 6 6.8977 4.6382 -3.6265 28 7 3.5538 -0.8247 0.0003 29 6 2.2412 -1.0916 -0.0005 30 8 1.7947 -2.2226 -0.0014 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3634 0.8899 0.5138 34 1 2.1405 1.7934 0.8961 35 1 2.1413 1.7955 -0.8949 36 1 4.9383 2.9096 -0.5552 37 1 5.0777 2.6802 -3.3667 38 1 6.5954 2.0563 -2.6771 39 1 8.1276 3.5375 -1.4570 40 1 6.8336 3.8433 -0.2736 41 1 8.5362 5.6450 -0.2159 42 1 6.9612 6.2711 -0.7603 43 1 9.3237 7.9143 -3.0845 44 1 8.1283 8.1708 -1.7909 45 1 10.3039 6.7238 -0.7185 46 1 12.9576 9.8856 1.1052 47 1 7.8611 6.4167 -4.3694 48 1 6.5672 6.7215 -3.1860 49 1 6.1592 4.6137 -4.4278 50 1 7.7337 3.9874 -3.8829 51 1 4.2621 -1.4873 0.0010 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325661701.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:32 Heat of formation + Delta-G solvation = -53.548570 kcal Electronic energy + Delta-G solvation = -29276.731941 eV Core-core repulsion = 25211.051872 eV Total energy + Delta-G solvation = -4065.680069 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.83403 -39.96944 -38.91141 -36.67635 -35.86787 -34.57847 -34.37169 -32.24937 -30.87569 -30.67032 -29.81489 -27.90813 -26.82771 -24.73220 -23.73493 -22.95000 -21.81681 -21.05480 -21.03593 -20.50454 -19.78371 -18.33081 -18.10400 -17.61241 -16.93501 -16.39620 -15.88793 -15.82210 -15.16057 -14.83041 -14.65076 -14.58767 -14.36576 -14.28316 -14.20094 -13.94465 -13.87042 -13.48589 -13.27457 -12.99128 -12.87733 -12.70034 -12.51640 -12.48294 -12.20234 -11.87575 -11.63056 -11.18138 -11.06556 -11.01404 -10.87224 -10.77226 -10.60017 -10.39022 -10.20848 -10.02096 -9.92711 -9.71105 -9.57980 -9.52170 -9.12624 -8.91122 -7.23616 -5.78727 -3.13640 1.87669 2.15094 2.41798 2.82603 3.33025 3.36403 3.37522 3.42167 3.65907 4.02497 4.19611 4.37617 4.46708 4.52711 4.56465 4.60137 4.70493 4.81870 4.96765 5.03484 5.13684 5.15849 5.21560 5.31793 5.37551 5.39536 5.42943 5.47558 5.52145 5.53150 5.58142 5.79431 5.86534 5.93005 5.98045 6.07256 6.12566 6.14377 6.17420 6.22999 6.40592 6.50401 6.59847 6.71363 6.81835 6.91135 6.99474 7.65952 7.98343 8.12925 8.40673 9.20207 9.92620 10.12940 11.39880 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.018889 B = 0.001899 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.984353 B =14743.942091 C =15393.320498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.637 5.637 3 C 0.106 3.894 4 C 0.103 3.897 5 H 0.119 0.881 6 C 0.500 3.500 7 O -0.522 6.522 8 N -0.721 5.721 9 C 0.123 3.877 10 C -0.098 4.098 11 H 0.078 0.922 12 C -0.115 4.115 13 C -0.112 4.112 14 C -0.098 4.098 15 H 0.068 0.932 16 C 0.161 3.839 17 N -0.755 5.755 18 C -0.243 4.243 19 H 0.089 0.911 20 C 0.002 3.998 21 N -0.935 5.935 22 Si 0.885 3.115 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.278 1.278 26 C -0.109 4.109 27 C -0.109 4.109 28 N -0.715 5.715 29 C 0.704 3.296 30 O -0.580 6.580 31 H 0.056 0.944 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.403 0.597 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.057 0.943 41 H 0.068 0.932 42 H 0.062 0.938 43 H 0.025 0.975 44 H 0.025 0.975 45 H 0.360 0.640 46 H 0.259 0.741 47 H 0.065 0.935 48 H 0.063 0.937 49 H 0.062 0.938 50 H 0.065 0.935 51 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.830 -16.818 -1.907 28.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.377 5.377 3 C -0.018 4.018 4 C -0.007 4.007 5 H 0.136 0.864 6 C 0.283 3.717 7 O -0.396 6.396 8 N -0.374 5.374 9 C 0.000 4.000 10 C -0.117 4.117 11 H 0.096 0.904 12 C -0.152 4.152 13 C -0.149 4.149 14 C -0.117 4.117 15 H 0.086 0.914 16 C 0.034 3.966 17 N -0.401 5.401 18 C -0.373 4.373 19 H 0.107 0.893 20 C -0.193 4.193 21 N -0.583 5.583 22 Si 0.715 3.285 23 H -0.211 1.211 24 H -0.218 1.218 25 H -0.204 1.204 26 C -0.147 4.147 27 C -0.147 4.147 28 N -0.376 5.376 29 C 0.405 3.595 30 O -0.458 6.458 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.115 0.885 35 H 0.104 0.896 36 H 0.238 0.762 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.043 0.957 44 H 0.043 0.957 45 H 0.193 0.807 46 H 0.069 0.931 47 H 0.083 0.917 48 H 0.082 0.918 49 H 0.081 0.919 50 H 0.083 0.917 51 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -23.118 -17.710 -2.598 29.238 hybrid contribution 0.989 -0.753 0.991 1.590 sum -22.130 -18.463 -1.607 28.865 Atomic orbital electron populations 1.21422 0.75149 1.03369 1.02125 1.47003 1.06519 1.05467 1.78718 1.22282 0.86173 0.89189 1.04191 1.21847 0.97269 0.83647 0.97979 0.86358 1.20744 0.79676 0.82210 0.89074 1.90774 1.58239 1.52637 1.37973 1.46037 1.56118 1.15142 1.20136 1.21528 0.96147 0.95680 0.86690 1.21439 0.98728 0.94331 0.97157 0.90358 1.21645 0.98213 0.98216 0.97136 1.21550 1.00575 0.94706 0.98092 1.21378 0.97458 0.98275 0.94585 0.91356 1.20669 0.90606 0.92868 0.92495 1.42732 1.41690 1.06998 1.48697 1.19074 1.12465 0.87022 1.18691 0.89302 1.24682 0.98732 0.96376 0.99541 1.69702 1.27712 1.24275 1.36631 0.86545 0.78488 0.84213 0.79220 1.21135 1.21770 1.20396 1.21497 0.98748 0.95691 0.98780 1.21491 1.00185 0.97320 0.95709 1.44825 1.07037 1.06042 1.79738 1.15807 0.81641 0.84676 0.77423 1.90979 1.75772 1.20874 1.58134 0.92531 0.90209 0.90674 0.88532 0.89550 0.76164 0.91332 0.91195 0.91844 0.92438 0.91338 0.91910 0.95680 0.95689 0.80701 0.93093 0.91655 0.91834 0.91900 0.91672 0.72257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 0.63 11.03 59.85 0.66 1.29 16 2 N -0.64 -4.78 3.36 -186.74 -0.63 -5.41 16 3 C 0.11 0.44 7.32 -3.16 -0.02 0.42 16 4 C 0.10 0.55 4.17 -68.20 -0.28 0.26 16 5 H 0.12 0.26 8.14 -51.93 -0.42 -0.17 16 6 C 0.50 3.86 6.95 -10.98 -0.08 3.79 16 7 O -0.52 -6.55 16.56 5.56 0.09 -6.46 16 8 N -0.72 -4.11 5.28 -60.30 -0.32 -4.42 16 9 C 0.12 0.89 5.06 -4.05 -0.02 0.87 16 10 C -0.10 -0.71 2.22 -90.62 -0.20 -0.91 16 11 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 12 C -0.11 -1.01 5.08 -26.73 -0.14 -1.14 16 13 C -0.11 -1.37 5.08 -26.73 -0.14 -1.50 16 14 C -0.10 -1.32 2.22 -90.62 -0.20 -1.52 16 15 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 16 C 0.16 2.93 5.65 -4.04 -0.02 2.91 16 17 N -0.76 -17.39 5.13 -59.91 -0.31 -17.70 16 18 C -0.24 -6.79 10.47 -15.06 -0.16 -6.94 16 19 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 20 C 0.00 0.06 5.50 -17.43 -0.10 -0.03 16 21 N -0.94 -29.15 13.97 55.49 0.78 -28.38 16 22 Si 0.88 21.73 27.74 -169.99 -4.71 17.02 16 23 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 25 H -0.28 -6.30 6.52 56.52 0.37 -5.94 16 26 C -0.11 -1.14 5.21 -26.71 -0.14 -1.27 16 27 C -0.11 -0.90 5.21 -26.71 -0.14 -1.04 16 28 N -0.71 -5.98 5.60 -59.33 -0.33 -6.31 16 29 C 0.70 7.70 8.60 -88.40 -0.76 6.94 16 30 O -0.58 -8.77 17.53 5.28 0.09 -8.68 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.08 0.49 7.92 -51.93 -0.41 0.08 16 33 H 0.07 0.18 8.14 -51.93 -0.42 -0.25 16 34 H 0.10 0.12 8.14 -51.93 -0.42 -0.30 16 35 H 0.09 0.33 7.73 -51.93 -0.40 -0.07 16 36 H 0.40 1.25 7.66 -40.82 -0.31 0.94 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.41 7.18 -51.93 -0.37 0.04 16 41 H 0.07 1.02 7.18 -51.93 -0.37 0.64 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.36 8.05 4.71 -40.82 -0.19 7.86 16 46 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 47 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 48 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 50 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 51 H 0.43 3.39 8.96 -40.82 -0.37 3.03 16 LS Contribution 403.66 15.07 6.08 6.08 Total: -1.00 -38.27 403.66 -9.78 -48.05 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -8.78 Total: 4.10 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: -1.73 Total: 2.11 kcal Atomic # 7 Polarization: -61.41 SS G_CDS: -0.81 Total: -62.22 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: 0.18 Total: -15.14 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.71 Total: 17.02 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -38.27 -9.78 -48.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325661701.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.501 kcal (2) G-P(sol) polarization free energy of solvation -38.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds