Wall clock time and date at job start Tue Mar 31 2020 20:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36933 * 119.99555 * 2 1 4 4 H 1.08010 * 120.00112 * 182.90621 * 3 2 1 5 5 C 1.38815 * 120.00645 * 2.90358 * 3 2 1 6 6 N 1.31621 * 119.99424 * 5.44357 * 5 3 2 7 7 Si 1.86794 * 120.00442 * 185.44906 * 5 3 2 8 8 H 1.48500 * 109.47479 * 59.99514 * 7 5 3 9 9 H 1.48496 * 109.47143 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.47032 * 299.99851 * 7 5 3 11 11 C 1.46493 * 120.00229 * 180.02562 * 2 1 3 12 12 C 1.52999 * 109.47774 * 84.42390 * 11 2 1 13 13 H 1.09004 * 109.86918 * 304.24630 * 12 11 2 14 14 C 1.54327 * 109.87784 * 65.41677 * 12 11 2 15 15 C 1.55158 * 102.93814 * 141.61785 * 14 12 11 16 16 C 1.55133 * 101.48563 * 324.33089 * 15 14 12 17 17 N 1.47013 * 109.88807 * 183.22750 * 12 11 2 18 18 C 1.34785 * 125.64730 * 61.60464 * 17 12 11 19 19 O 1.21274 * 120.00041 * 355.07423 * 18 17 12 20 20 C 1.50697 * 119.99945 * 175.35106 * 18 17 12 21 21 H 1.09002 * 109.58468 * 350.70152 * 20 18 17 22 22 C 1.53195 * 109.58833 * 111.12714 * 20 18 17 23 23 C 1.53043 * 109.31113 * 174.42248 * 22 20 18 24 24 C 1.53034 * 109.53566 * 298.63121 * 23 22 20 25 25 C 1.53193 * 109.31095 * 61.37239 * 24 23 22 26 26 N 1.46921 * 108.77569 * 305.35871 * 25 24 23 27 27 C 1.34776 * 120.63142 * 233.63180 * 26 25 24 28 28 N 1.34769 * 120.00311 * 5.88519 * 27 26 25 29 29 O 1.21589 * 119.99719 * 185.87739 * 27 26 25 30 30 H 1.09001 * 109.47310 * 179.55745 * 1 2 3 31 31 H 1.09006 * 109.46872 * 299.55115 * 1 2 3 32 32 H 1.08997 * 109.47874 * 59.55039 * 1 2 3 33 33 H 0.97002 * 119.99843 * 179.97438 * 6 5 3 34 34 H 1.09002 * 109.46875 * 324.42418 * 11 2 1 35 35 H 1.08999 * 109.47092 * 204.43010 * 11 2 1 36 36 H 1.09005 * 110.72145 * 259.97328 * 14 12 11 37 37 H 1.08992 * 110.72253 * 23.25008 * 14 12 11 38 38 H 1.09000 * 111.00998 * 82.56988 * 15 14 12 39 39 H 1.09006 * 111.00339 * 206.38597 * 15 14 12 40 40 H 1.09006 * 110.49597 * 278.45740 * 16 15 14 41 41 H 1.09003 * 110.34231 * 156.06524 * 16 15 14 42 42 H 1.08997 * 109.49631 * 294.37588 * 22 20 18 43 43 H 1.08996 * 109.49656 * 54.46885 * 22 20 18 44 44 H 1.09002 * 109.45351 * 178.61331 * 23 22 20 45 45 H 1.08995 * 109.44812 * 58.65351 * 23 22 20 46 46 H 1.08997 * 109.50396 * 301.41939 * 24 23 22 47 47 H 1.09004 * 109.49341 * 181.31598 * 24 23 22 48 48 H 1.09003 * 109.58663 * 185.56941 * 25 24 23 49 49 H 1.08998 * 109.58878 * 65.14994 * 25 24 23 50 50 H 0.97009 * 119.99907 * 4.74796 * 28 27 26 51 51 H 0.97002 * 120.00486 * 184.75045 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.2286 1.1866 -0.0474 5 6 1.4569 2.3874 0.0609 6 7 0.1511 2.3864 0.2265 7 14 2.3777 4.0053 -0.0923 8 1 3.0719 4.0576 -1.4040 9 1 1.4165 5.1330 0.0049 10 1 3.3770 4.1116 1.0011 11 6 2.1975 -1.2686 -0.0006 12 6 2.3312 -1.7799 -1.4364 13 1 1.3451 -1.8637 -1.8932 14 6 3.2130 -0.8151 -2.2569 15 6 4.0399 -1.7760 -3.1515 16 6 4.2590 -2.9772 -2.1945 17 7 2.9972 -3.0905 -1.4406 18 6 2.5338 -4.2090 -0.8483 19 8 1.5277 -4.1651 -0.1727 20 6 3.2694 -5.5129 -1.0206 21 1 4.0447 -5.3978 -1.7782 22 6 3.9056 -5.9236 0.3111 23 6 4.5314 -7.3127 0.1660 24 6 3.4432 -8.3303 -0.1836 25 6 2.8019 -7.9469 -1.5210 26 7 2.3259 -6.5595 -1.4367 27 6 1.0478 -6.2527 -1.7349 28 7 0.1632 -7.2345 -1.9992 29 8 0.6929 -5.0902 -1.7652 30 1 -0.3634 -1.0276 -0.0079 31 1 -0.3633 0.5069 0.8940 32 1 -0.3635 0.5208 -0.8859 33 1 -0.3330 3.2259 0.2694 34 1 1.6553 -2.0015 0.5970 35 1 3.1894 -1.1156 0.4245 36 1 2.5972 -0.1543 -2.8672 37 1 3.8669 -0.2391 -1.6023 38 1 3.4731 -2.0735 -4.0338 39 1 4.9911 -1.3249 -3.4345 40 1 5.0894 -2.7787 -1.5168 41 1 4.4432 -3.8875 -2.7650 42 1 4.6772 -5.2035 0.5831 43 1 3.1407 -5.9484 1.0873 44 1 5.0062 -7.5968 1.1051 45 1 5.2787 -7.2929 -0.6272 46 1 2.6827 -8.3325 0.5972 47 1 3.8859 -9.3231 -0.2638 48 1 1.9614 -8.6098 -1.7265 49 1 3.5404 -8.0321 -2.3181 50 1 0.4277 -8.1633 -1.9077 51 1 -0.7381 -7.0124 -2.2809 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328782176.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:56 Heat of formation + Delta-G solvation = -2.070597 kcal Electronic energy + Delta-G solvation = -32135.121517 eV Core-core repulsion = 28071.673700 eV Total energy + Delta-G solvation = -4063.447817 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.98883 -39.12392 -37.51963 -36.77944 -35.12538 -33.85918 -32.58558 -31.83143 -31.21136 -30.67401 -28.76241 -25.93995 -25.71170 -25.00551 -24.13428 -22.53889 -21.61387 -21.09594 -20.45815 -19.43555 -19.00235 -17.69007 -17.10116 -16.77346 -16.51206 -15.76828 -15.56700 -15.01189 -14.80925 -14.55285 -14.49162 -14.39348 -13.95728 -13.56094 -13.46920 -13.38077 -12.98164 -12.89811 -12.73097 -12.59931 -12.23022 -11.86299 -11.73239 -11.60974 -11.42641 -11.17975 -11.02375 -11.00458 -10.77167 -10.72244 -10.62760 -10.23635 -10.11027 -9.99736 -9.71999 -9.64368 -9.57432 -9.53876 -8.97089 -8.71235 -8.43216 -7.95102 -6.68102 -5.44520 -2.88688 2.46275 3.18693 3.37079 3.47581 3.51511 3.53131 3.53635 4.04309 4.41496 4.46915 4.55354 4.63466 4.74170 4.84543 4.89492 4.93547 5.08807 5.12882 5.27565 5.36046 5.42812 5.51183 5.55316 5.59750 5.65330 5.72804 5.76239 5.82617 5.88442 5.98689 6.05389 6.14330 6.22145 6.27386 6.53605 6.61187 6.62179 6.76271 6.87906 6.92052 7.07004 7.12347 7.25245 7.80818 7.81877 7.90593 8.13283 8.16195 8.56519 8.64566 8.93037 9.44750 10.09493 10.54726 11.52881 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.019227 B = 0.003200 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.967673 B = 8746.841143 C = 9183.164911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.170 3.830 2 N -0.606 5.606 3 C -0.236 4.236 4 H 0.072 0.928 5 C -0.010 4.010 6 N -0.918 5.918 7 Si 0.905 3.095 8 H -0.286 1.286 9 H -0.292 1.292 10 H -0.287 1.287 11 C 0.150 3.850 12 C 0.124 3.876 13 H 0.066 0.934 14 C -0.108 4.108 15 C -0.137 4.137 16 C 0.100 3.900 17 N -0.612 5.612 18 C 0.540 3.460 19 O -0.498 6.498 20 C 0.148 3.852 21 H 0.085 0.915 22 C -0.125 4.125 23 C -0.116 4.116 24 C -0.138 4.138 25 C 0.116 3.884 26 N -0.622 5.622 27 C 0.696 3.304 28 N -0.871 5.871 29 O -0.539 6.539 30 H -0.006 1.006 31 H 0.053 0.947 32 H 0.027 0.973 33 H 0.248 0.752 34 H 0.050 0.950 35 H 0.041 0.959 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.070 0.930 45 H 0.066 0.934 46 H 0.070 0.930 47 H 0.076 0.924 48 H 0.079 0.921 49 H 0.070 0.930 50 H 0.389 0.611 51 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.493 -25.598 -6.322 28.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.330 5.330 3 C -0.366 4.366 4 H 0.090 0.910 5 C -0.205 4.205 6 N -0.567 5.567 7 Si 0.736 3.264 8 H -0.213 1.213 9 H -0.218 1.218 10 H -0.213 1.213 11 C 0.021 3.979 12 C 0.019 3.981 13 H 0.084 0.916 14 C -0.146 4.146 15 C -0.175 4.175 16 C -0.024 4.024 17 N -0.349 5.349 18 C 0.327 3.673 19 O -0.371 6.371 20 C 0.041 3.959 21 H 0.102 0.898 22 C -0.164 4.164 23 C -0.153 4.153 24 C -0.177 4.177 25 C -0.007 4.007 26 N -0.363 5.363 27 C 0.395 3.605 28 N -0.442 5.442 29 O -0.412 6.412 30 H 0.013 0.987 31 H 0.071 0.929 32 H 0.045 0.955 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.099 0.901 43 H 0.097 0.903 44 H 0.089 0.911 45 H 0.085 0.915 46 H 0.088 0.912 47 H 0.094 0.906 48 H 0.097 0.903 49 H 0.088 0.912 50 H 0.219 0.781 51 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 9.654 -24.616 -5.854 27.081 hybrid contribution 0.268 0.405 -0.376 0.614 sum 9.921 -24.210 -6.230 26.896 Atomic orbital electron populations 1.21015 0.81588 0.93259 1.01562 1.43980 1.02461 1.00327 1.86201 1.19271 0.90641 0.83700 1.42947 0.91029 1.24840 0.95753 0.97621 1.02312 1.70233 1.05670 1.24322 1.56478 0.86302 0.78431 0.83822 0.77809 1.21331 1.21791 1.21333 1.21030 0.95922 0.88270 0.92629 1.22521 0.95500 0.79731 1.00358 0.91599 1.22528 0.98050 0.96471 0.97514 1.22849 1.00746 0.96023 0.97857 1.22317 0.87420 0.98579 0.94051 1.48489 1.22446 1.10070 1.53906 1.19227 0.84434 0.83218 0.80468 1.90714 1.23406 1.84413 1.38540 1.21031 0.90757 0.86686 0.97470 0.89759 1.21862 1.00823 0.97426 0.96270 1.21489 0.97505 0.94174 1.02179 1.21966 0.99020 0.99171 0.97525 1.21623 0.99243 0.81955 0.97899 1.46999 1.08953 1.07636 1.72758 1.15985 0.80618 0.85335 0.78529 1.43170 1.15709 1.08245 1.77119 1.91233 1.77359 1.16762 1.55843 0.98732 0.92861 0.95463 0.94140 0.93180 0.94065 0.90373 0.90302 0.91324 0.90561 0.91740 0.91838 0.90148 0.90286 0.91103 0.91545 0.91172 0.90575 0.90330 0.91212 0.78069 0.75569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.82 9.00 59.85 0.54 5.36 16 2 N -0.61 -16.62 2.81 -181.12 -0.51 -17.13 16 3 C -0.24 -6.70 8.88 -15.06 -0.13 -6.83 16 4 H 0.07 1.93 7.21 -52.48 -0.38 1.55 16 5 C -0.01 -0.28 5.44 -17.43 -0.09 -0.37 16 6 N -0.92 -28.10 9.48 55.49 0.53 -27.57 16 7 Si 0.91 22.63 29.56 -169.99 -5.02 17.61 16 8 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 9 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 11 C 0.15 3.57 5.04 -4.05 -0.02 3.55 16 12 C 0.12 2.59 3.15 -66.96 -0.21 2.38 16 13 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 14 C -0.11 -1.97 5.73 -24.89 -0.14 -2.11 16 15 C -0.14 -1.85 7.10 -24.46 -0.17 -2.03 16 16 C 0.10 1.30 6.62 -2.41 -0.02 1.28 16 17 N -0.61 -10.74 3.06 -162.88 -0.50 -11.24 16 18 C 0.54 9.73 4.72 -10.98 -0.05 9.68 16 19 O -0.50 -11.30 12.66 -20.04 -0.25 -11.55 16 20 C 0.15 1.86 3.09 -68.75 -0.21 1.65 16 21 H 0.08 0.89 6.02 -51.93 -0.31 0.58 16 22 C -0.13 -1.29 5.35 -26.61 -0.14 -1.43 16 23 C -0.12 -0.78 5.88 -26.69 -0.16 -0.93 16 24 C -0.14 -0.82 6.08 -26.61 -0.16 -0.98 16 25 C 0.12 0.77 6.43 -3.71 -0.02 0.74 16 26 N -0.62 -7.21 2.97 -172.23 -0.51 -7.72 16 27 C 0.70 10.22 8.18 -86.93 -0.71 9.51 16 28 N -0.87 -8.48 8.77 27.63 0.24 -8.24 16 29 O -0.54 -11.11 12.47 -20.31 -0.25 -11.37 16 30 H -0.01 -0.16 7.87 -51.93 -0.41 -0.57 16 31 H 0.05 1.62 6.70 -51.93 -0.35 1.27 16 32 H 0.03 0.81 7.37 -51.93 -0.38 0.42 16 33 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 34 H 0.05 1.29 6.50 -51.93 -0.34 0.95 16 35 H 0.04 0.95 7.90 -51.93 -0.41 0.54 16 36 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 37 H 0.08 1.51 6.86 -51.93 -0.36 1.15 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.06 0.67 6.62 -51.93 -0.34 0.33 16 42 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 48 H 0.08 0.36 5.58 -51.93 -0.29 0.07 16 49 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 50 H 0.39 2.35 6.33 -40.82 -0.26 2.10 16 51 H 0.41 3.80 8.93 -40.82 -0.36 3.43 16 LS Contribution 383.70 15.07 5.78 5.78 Total: -1.00 -38.40 383.70 -10.61 -49.01 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -8.40 Total: 2.96 kcal Atomic # 6 Polarization: 21.18 SS G_CDS: -1.71 Total: 19.46 kcal Atomic # 7 Polarization: -71.15 SS G_CDS: -0.75 Total: -71.91 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -0.51 Total: -22.92 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -38.40 -10.61 -49.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328782176.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.939 kcal (2) G-P(sol) polarization free energy of solvation -38.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds