Wall clock time and date at job start Tue Mar 31 2020 20:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36933 * 119.99555 * 2 1 4 4 H 1.08010 * 120.00112 * 182.90621 * 3 2 1 5 5 C 1.38815 * 120.00645 * 2.90358 * 3 2 1 6 6 N 1.31621 * 119.99424 * 5.44357 * 5 3 2 7 7 Si 1.86794 * 120.00442 * 185.44906 * 5 3 2 8 8 H 1.48500 * 109.47479 * 59.99514 * 7 5 3 9 9 H 1.48496 * 109.47143 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.47032 * 299.99851 * 7 5 3 11 11 C 1.46493 * 120.00229 * 180.02562 * 2 1 3 12 12 C 1.52999 * 109.47774 * 84.42390 * 11 2 1 13 13 H 1.09004 * 109.86918 * 304.24630 * 12 11 2 14 14 C 1.54327 * 109.87784 * 65.41677 * 12 11 2 15 15 C 1.55158 * 102.93814 * 141.61785 * 14 12 11 16 16 C 1.55133 * 101.48563 * 324.33089 * 15 14 12 17 17 N 1.47013 * 109.88807 * 183.22750 * 12 11 2 18 18 C 1.34785 * 125.64730 * 61.60464 * 17 12 11 19 19 O 1.21274 * 120.00041 * 355.07423 * 18 17 12 20 20 C 1.50697 * 119.99945 * 175.35106 * 18 17 12 21 21 H 1.09002 * 109.58468 * 350.70152 * 20 18 17 22 22 C 1.53195 * 109.58833 * 111.12714 * 20 18 17 23 23 C 1.53043 * 109.31113 * 174.42248 * 22 20 18 24 24 C 1.53034 * 109.53566 * 298.63121 * 23 22 20 25 25 C 1.53193 * 109.31095 * 61.37239 * 24 23 22 26 26 N 1.46921 * 108.77569 * 305.35871 * 25 24 23 27 27 C 1.34776 * 120.63142 * 233.63180 * 26 25 24 28 28 N 1.34769 * 120.00311 * 5.88519 * 27 26 25 29 29 O 1.21589 * 119.99719 * 185.87739 * 27 26 25 30 30 H 1.09001 * 109.47310 * 179.55745 * 1 2 3 31 31 H 1.09006 * 109.46872 * 299.55115 * 1 2 3 32 32 H 1.08997 * 109.47874 * 59.55039 * 1 2 3 33 33 H 0.97002 * 119.99843 * 179.97438 * 6 5 3 34 34 H 1.09002 * 109.46875 * 324.42418 * 11 2 1 35 35 H 1.08999 * 109.47092 * 204.43010 * 11 2 1 36 36 H 1.09005 * 110.72145 * 259.97328 * 14 12 11 37 37 H 1.08992 * 110.72253 * 23.25008 * 14 12 11 38 38 H 1.09000 * 111.00998 * 82.56988 * 15 14 12 39 39 H 1.09006 * 111.00339 * 206.38597 * 15 14 12 40 40 H 1.09006 * 110.49597 * 278.45740 * 16 15 14 41 41 H 1.09003 * 110.34231 * 156.06524 * 16 15 14 42 42 H 1.08997 * 109.49631 * 294.37588 * 22 20 18 43 43 H 1.08996 * 109.49656 * 54.46885 * 22 20 18 44 44 H 1.09002 * 109.45351 * 178.61331 * 23 22 20 45 45 H 1.08995 * 109.44812 * 58.65351 * 23 22 20 46 46 H 1.08997 * 109.50396 * 301.41939 * 24 23 22 47 47 H 1.09004 * 109.49341 * 181.31598 * 24 23 22 48 48 H 1.09003 * 109.58663 * 185.56941 * 25 24 23 49 49 H 1.08998 * 109.58878 * 65.14994 * 25 24 23 50 50 H 0.97009 * 119.99907 * 4.74796 * 28 27 26 51 51 H 0.97002 * 120.00486 * 184.75045 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.2286 1.1866 -0.0474 5 6 1.4569 2.3874 0.0609 6 7 0.1511 2.3864 0.2265 7 14 2.3777 4.0053 -0.0923 8 1 3.0719 4.0576 -1.4040 9 1 1.4165 5.1330 0.0049 10 1 3.3770 4.1116 1.0011 11 6 2.1975 -1.2686 -0.0006 12 6 2.3312 -1.7799 -1.4364 13 1 1.3451 -1.8637 -1.8932 14 6 3.2130 -0.8151 -2.2569 15 6 4.0399 -1.7760 -3.1515 16 6 4.2590 -2.9772 -2.1945 17 7 2.9972 -3.0905 -1.4406 18 6 2.5338 -4.2090 -0.8483 19 8 1.5277 -4.1651 -0.1727 20 6 3.2694 -5.5129 -1.0206 21 1 4.0447 -5.3978 -1.7782 22 6 3.9056 -5.9236 0.3111 23 6 4.5314 -7.3127 0.1660 24 6 3.4432 -8.3303 -0.1836 25 6 2.8019 -7.9469 -1.5210 26 7 2.3259 -6.5595 -1.4367 27 6 1.0478 -6.2527 -1.7349 28 7 0.1632 -7.2345 -1.9992 29 8 0.6929 -5.0902 -1.7652 30 1 -0.3634 -1.0276 -0.0079 31 1 -0.3633 0.5069 0.8940 32 1 -0.3635 0.5208 -0.8859 33 1 -0.3330 3.2259 0.2694 34 1 1.6553 -2.0015 0.5970 35 1 3.1894 -1.1156 0.4245 36 1 2.5972 -0.1543 -2.8672 37 1 3.8669 -0.2391 -1.6023 38 1 3.4731 -2.0735 -4.0338 39 1 4.9911 -1.3249 -3.4345 40 1 5.0894 -2.7787 -1.5168 41 1 4.4432 -3.8875 -2.7650 42 1 4.6772 -5.2035 0.5831 43 1 3.1407 -5.9484 1.0873 44 1 5.0062 -7.5968 1.1051 45 1 5.2787 -7.2929 -0.6272 46 1 2.6827 -8.3325 0.5972 47 1 3.8859 -9.3231 -0.2638 48 1 1.9614 -8.6098 -1.7265 49 1 3.5404 -8.0321 -2.3181 50 1 0.4277 -8.1633 -1.9077 51 1 -0.7381 -7.0124 -2.2809 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328782176.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:54 Heat of formation + Delta-G solvation = -30.074044 kcal Electronic energy + Delta-G solvation = -32136.335838 eV Core-core repulsion = 28071.673700 eV Total energy + Delta-G solvation = -4064.662137 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.06553 -40.44845 -38.56352 -38.11937 -37.13384 -34.90872 -33.62746 -33.26902 -32.70968 -31.73116 -30.47986 -28.07682 -26.80156 -26.69397 -25.05047 -23.84389 -22.87745 -22.49186 -21.73522 -20.49486 -20.21944 -18.89879 -18.83680 -18.11721 -17.69908 -17.24618 -16.64895 -16.49172 -16.07648 -15.72608 -15.57996 -15.42951 -15.27127 -15.15838 -14.77369 -14.58144 -14.34092 -14.15063 -14.05908 -13.85524 -13.77183 -13.41109 -13.23776 -12.81839 -12.73415 -12.60984 -12.50827 -12.27604 -12.14151 -12.09085 -11.93967 -11.87802 -11.72410 -11.62932 -11.55585 -11.47022 -10.89873 -10.70087 -10.64450 -10.30085 -9.64098 -9.46021 -8.86753 -7.69690 -5.17981 1.47061 1.49918 1.51696 1.57893 2.03505 2.11240 2.37459 2.54725 3.26609 3.37390 3.50493 3.67830 3.83074 3.84121 3.86328 3.93913 4.01050 4.10022 4.13453 4.26486 4.36203 4.48558 4.52021 4.53576 4.62137 4.69949 4.73736 4.83970 4.89348 4.91321 5.01833 5.04841 5.07937 5.12909 5.15642 5.19918 5.23261 5.41519 5.42732 5.46212 5.49245 5.54339 5.66306 5.74793 5.79838 6.01773 6.28592 6.81554 6.95820 7.15645 7.47638 7.77272 7.86441 8.31953 9.28808 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.019227 B = 0.003200 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.967673 B = 8746.841143 C = 9183.164911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.196 3.804 2 N -0.620 5.620 3 C -0.243 4.243 4 H 0.088 0.912 5 C -0.071 4.071 6 N -0.955 5.955 7 Si 0.981 3.019 8 H -0.272 1.272 9 H -0.299 1.299 10 H -0.275 1.275 11 C 0.159 3.841 12 C 0.136 3.864 13 H 0.014 0.986 14 C -0.104 4.104 15 C -0.122 4.122 16 C 0.096 3.904 17 N -0.618 5.618 18 C 0.529 3.471 19 O -0.557 6.557 20 C 0.155 3.845 21 H 0.117 0.883 22 C -0.122 4.122 23 C -0.110 4.110 24 C -0.136 4.136 25 C 0.108 3.892 26 N -0.621 5.621 27 C 0.683 3.317 28 N -0.851 5.851 29 O -0.608 6.608 30 H -0.008 1.008 31 H 0.030 0.970 32 H 0.005 0.995 33 H 0.243 0.757 34 H 0.020 0.980 35 H 0.051 0.949 36 H 0.053 0.947 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.113 0.887 40 H 0.089 0.911 41 H 0.100 0.900 42 H 0.087 0.913 43 H 0.043 0.957 44 H 0.081 0.919 45 H 0.092 0.908 46 H 0.050 0.950 47 H 0.110 0.890 48 H 0.098 0.902 49 H 0.098 0.902 50 H 0.410 0.590 51 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.985 -28.100 -7.901 32.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.344 5.344 3 C -0.372 4.372 4 H 0.106 0.894 5 C -0.263 4.263 6 N -0.605 5.605 7 Si 0.809 3.191 8 H -0.198 1.198 9 H -0.226 1.226 10 H -0.201 1.201 11 C 0.032 3.968 12 C 0.030 3.970 13 H 0.033 0.967 14 C -0.143 4.143 15 C -0.159 4.159 16 C -0.025 4.025 17 N -0.354 5.354 18 C 0.318 3.682 19 O -0.434 6.434 20 C 0.047 3.953 21 H 0.134 0.866 22 C -0.161 4.161 23 C -0.147 4.147 24 C -0.174 4.174 25 C -0.013 4.013 26 N -0.361 5.361 27 C 0.382 3.618 28 N -0.423 5.423 29 O -0.487 6.487 30 H 0.010 0.990 31 H 0.048 0.952 32 H 0.024 0.976 33 H 0.052 0.948 34 H 0.039 0.961 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.132 0.868 40 H 0.108 0.892 41 H 0.118 0.882 42 H 0.105 0.895 43 H 0.061 0.939 44 H 0.100 0.900 45 H 0.110 0.890 46 H 0.069 0.931 47 H 0.128 0.872 48 H 0.116 0.884 49 H 0.116 0.884 50 H 0.243 0.757 51 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 14.235 -27.246 -7.458 31.633 hybrid contribution -1.182 1.065 0.160 1.599 sum 13.054 -26.181 -7.299 30.152 Atomic orbital electron populations 1.20589 0.82861 0.92196 0.99293 1.44168 1.02024 1.01682 1.86558 1.19680 0.91427 0.83923 1.42171 0.89434 1.25785 0.96687 1.01436 1.02407 1.70452 1.07460 1.24792 1.57809 0.85119 0.77032 0.78503 0.78482 1.19773 1.22570 1.20053 1.20992 0.95160 0.86176 0.94477 1.21931 0.94519 0.82764 0.97792 0.96732 1.22384 0.97754 0.96400 0.97722 1.22846 1.01394 0.94776 0.96910 1.22668 0.85607 0.99989 0.94241 1.48596 1.23791 1.08600 1.54414 1.20339 0.83967 0.84870 0.79038 1.90677 1.26188 1.85439 1.41075 1.21086 0.90614 0.83931 0.99645 0.86563 1.21880 0.99957 1.00395 0.93854 1.21508 0.97919 0.91462 1.03799 1.21982 0.98399 1.00670 0.96328 1.22055 1.00809 0.79112 0.99309 1.47135 1.07770 1.09525 1.71683 1.16393 0.81979 0.85024 0.78362 1.42927 1.15092 1.08551 1.75764 1.91199 1.78705 1.19818 1.58929 0.98976 0.95163 0.97648 0.94754 0.96140 0.93058 0.92772 0.90758 0.91229 0.86835 0.89248 0.88241 0.89484 0.93859 0.90012 0.88995 0.93125 0.87170 0.88361 0.88421 0.75686 0.75339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.20 11.95 9.00 127.77 1.15 13.11 16 2 N -0.62 -35.84 2.81 -726.94 -2.04 -37.88 16 3 C -0.24 -14.07 8.88 84.03 0.75 -13.33 16 4 H 0.09 4.70 7.21 -2.91 -0.02 4.68 16 5 C -0.07 -4.22 5.44 84.86 0.46 -3.76 16 6 N -0.96 -60.86 9.48 21.65 0.21 -60.65 16 7 Si 0.98 47.02 29.56 68.60 2.03 49.05 16 8 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 9 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 10 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 11 C 0.16 8.02 5.04 86.38 0.44 8.45 16 12 C 0.14 5.99 3.15 45.34 0.14 6.13 16 13 H 0.01 0.78 8.14 -2.39 -0.02 0.76 16 14 C -0.10 -3.83 5.73 31.78 0.18 -3.65 16 15 C -0.12 -2.96 7.10 32.06 0.23 -2.73 16 16 C 0.10 2.19 6.62 86.93 0.58 2.76 16 17 N -0.62 -21.79 3.06 -787.62 -2.41 -24.20 16 18 C 0.53 19.56 4.72 87.65 0.41 19.98 16 19 O -0.56 -27.26 12.66 21.47 0.27 -26.99 16 20 C 0.15 3.63 3.09 44.23 0.14 3.76 16 21 H 0.12 1.96 6.02 -2.39 -0.01 1.94 16 22 C -0.12 -2.32 5.35 30.67 0.16 -2.15 16 23 C -0.11 -1.03 5.88 30.62 0.18 -0.85 16 24 C -0.14 -1.07 6.08 30.67 0.19 -0.89 16 25 C 0.11 1.00 6.43 86.36 0.56 1.56 16 26 N -0.62 -13.36 2.97 -817.08 -2.43 -15.79 16 27 C 0.68 20.25 8.18 179.06 1.46 21.72 16 28 N -0.85 -16.08 8.77 -184.75 -1.62 -17.70 16 29 O -0.61 -26.62 12.47 20.48 0.26 -26.37 16 30 H -0.01 -0.50 7.87 -2.39 -0.02 -0.52 16 31 H 0.03 1.96 6.70 -2.38 -0.02 1.95 16 32 H 0.00 0.32 7.37 -2.39 -0.02 0.31 16 33 H 0.24 15.04 8.31 -92.71 -0.77 14.27 16 34 H 0.02 1.14 6.50 -2.39 -0.02 1.12 16 35 H 0.05 2.43 7.90 -2.39 -0.02 2.41 16 36 H 0.05 2.22 8.14 -2.38 -0.02 2.20 16 37 H 0.07 2.78 6.86 -2.39 -0.02 2.77 16 38 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.11 1.99 8.14 -2.38 -0.02 1.98 16 40 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 41 H 0.10 1.60 6.62 -2.39 -0.02 1.58 16 42 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.09 0.47 8.14 -2.39 -0.02 0.46 16 46 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 47 H 0.11 0.21 8.14 -2.39 -0.02 0.20 16 48 H 0.10 0.50 5.58 -2.39 -0.01 0.49 16 49 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 50 H 0.41 4.12 6.33 -92.70 -0.59 3.53 16 51 H 0.41 7.71 8.93 -92.71 -0.83 6.88 16 Total: -1.00 -94.05 383.70 0.82 -93.24 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -0.47 Total: 17.19 kcal Atomic # 6 Polarization: 43.09 SS G_CDS: 7.02 Total: 50.12 kcal Atomic # 7 Polarization: -147.93 SS G_CDS: -8.30 Total: -156.23 kcal Atomic # 8 Polarization: -53.89 SS G_CDS: 0.53 Total: -53.36 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.05 kcal Total: -94.05 0.82 -93.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328782176.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.164 kcal (2) G-P(sol) polarization free energy of solvation -94.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds