Wall clock time and date at job start Tue Mar 31 2020 20:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36945 * 119.99781 * 2 1 4 4 H 1.07999 * 119.99433 * 205.16801 * 3 2 1 5 5 C 1.38809 * 120.00196 * 25.16562 * 3 2 1 6 6 N 1.31625 * 119.99991 * 9.42952 * 5 3 2 7 7 Si 1.86798 * 119.99973 * 189.43438 * 5 3 2 8 8 H 1.48499 * 109.47374 * 5.00044 * 7 5 3 9 9 H 1.48498 * 109.47447 * 125.00421 * 7 5 3 10 10 H 1.48501 * 109.46866 * 245.00590 * 7 5 3 11 11 C 1.46499 * 120.00279 * 179.97438 * 2 1 3 12 12 C 1.53000 * 109.46873 * 271.93664 * 11 2 1 13 13 H 1.09002 * 109.99739 * 307.92216 * 12 11 2 14 14 C 1.54329 * 109.88463 * 69.01892 * 12 11 2 15 15 C 1.55154 * 102.94098 * 141.60661 * 14 12 11 16 16 C 1.55127 * 101.49001 * 324.33191 * 15 14 12 17 17 N 1.47023 * 109.88243 * 186.82597 * 12 11 2 18 18 C 1.34780 * 125.64518 * 61.60369 * 17 12 11 19 19 O 1.21280 * 120.00172 * 355.20329 * 18 17 12 20 20 C 1.50697 * 119.99766 * 175.20338 * 18 17 12 21 21 H 1.08999 * 109.58967 * 357.30096 * 20 18 17 22 22 C 1.53193 * 109.58949 * 236.87085 * 20 18 17 23 23 C 1.53034 * 109.34186 * 185.59513 * 22 20 18 24 24 C 1.53040 * 109.53855 * 61.31777 * 23 22 20 25 25 C 1.53191 * 109.33805 * 298.68062 * 24 23 22 26 26 N 1.46921 * 108.77527 * 54.62248 * 25 24 23 27 27 C 1.34771 * 120.63243 * 126.41404 * 26 25 24 28 28 N 1.34780 * 120.00223 * 354.35097 * 27 26 25 29 29 O 1.21592 * 120.00456 * 174.35554 * 27 26 25 30 30 H 1.09001 * 109.47089 * 273.97584 * 1 2 3 31 31 H 1.09003 * 109.46929 * 33.97501 * 1 2 3 32 32 H 1.08992 * 109.46775 * 153.97178 * 1 2 3 33 33 H 0.96994 * 119.99481 * 179.97438 * 6 5 3 34 34 H 1.08996 * 109.47440 * 151.93596 * 11 2 1 35 35 H 1.09002 * 109.46561 * 31.93276 * 11 2 1 36 36 H 1.08995 * 110.72213 * 259.97041 * 14 12 11 37 37 H 1.08997 * 110.71770 * 23.24735 * 14 12 11 38 38 H 1.09003 * 111.00589 * 82.57697 * 15 14 12 39 39 H 1.09005 * 111.00372 * 206.38968 * 15 14 12 40 40 H 1.08996 * 110.49762 * 278.45573 * 16 15 14 41 41 H 1.08996 * 110.34434 * 156.05705 * 16 15 14 42 42 H 1.09010 * 109.49342 * 305.53332 * 22 20 18 43 43 H 1.09000 * 109.49771 * 65.62188 * 22 20 18 44 44 H 1.08998 * 109.43334 * 301.30940 * 23 22 20 45 45 H 1.08998 * 109.48349 * 181.35336 * 23 22 20 46 46 H 1.09007 * 109.49485 * 178.71770 * 24 23 22 47 47 H 1.08996 * 109.50112 * 58.65192 * 24 23 22 48 48 H 1.09005 * 109.58747 * 174.41109 * 25 24 23 49 49 H 1.09004 * 109.58676 * 294.83073 * 25 24 23 50 50 H 0.97008 * 119.99434 * 5.01816 * 28 27 26 51 51 H 0.96996 * 120.00100 * 185.00600 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1528 1.2303 -0.3978 5 6 1.5545 2.3311 0.5112 6 7 0.4134 2.2453 1.1617 7 14 2.3728 3.9937 0.2758 8 1 3.5721 3.8377 -0.5858 9 1 1.4172 4.9287 -0.3706 10 1 2.7797 4.5366 1.5968 11 6 2.1976 -1.2687 0.0006 12 6 2.4104 -1.7340 1.4425 13 1 2.8586 -0.9330 2.0304 14 6 1.0605 -2.1495 2.0646 15 6 1.4377 -3.3901 2.9165 16 6 2.5315 -4.0489 2.0356 17 7 3.2827 -2.9173 1.4624 18 6 4.5564 -2.9616 1.0239 19 8 5.0462 -1.9919 0.4847 20 6 5.3719 -4.2161 1.2034 21 1 4.7861 -4.9582 1.7458 22 6 6.6476 -3.8917 1.9871 23 6 7.5366 -5.1359 2.0457 24 6 7.9328 -5.5493 0.6265 25 6 6.6716 -5.8927 -0.1725 26 7 5.7483 -4.7515 -0.1121 27 6 5.2555 -4.2063 -1.2418 28 7 5.6951 -4.6317 -2.4428 29 8 4.4143 -3.3307 -1.1777 30 1 -0.3633 0.0713 1.0252 31 1 -0.3633 0.8523 -0.5743 32 1 -0.3632 -0.9234 -0.4509 33 1 -0.0022 3.0455 1.5191 34 1 3.1646 -1.1302 -0.4829 35 1 1.6239 -2.0196 -0.5427 36 1 0.6657 -1.3536 2.6960 37 1 0.3445 -2.4182 1.2880 38 1 1.8387 -3.0917 3.8852 39 1 0.5827 -4.0552 3.0381 40 1 2.0766 -4.6427 1.2428 41 1 3.1874 -4.6691 2.6465 42 1 7.1849 -3.0843 1.4893 43 1 6.3846 -3.5843 2.9992 44 1 6.9901 -5.9500 2.5219 45 1 8.4341 -4.9146 2.6234 46 1 8.5845 -6.4220 0.6703 47 1 8.4582 -4.7269 0.1413 48 1 6.9394 -6.0915 -1.2103 49 1 6.1940 -6.7725 0.2587 50 1 6.3112 -5.3790 -2.4969 51 1 5.3952 -4.1906 -3.2530 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328782178.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:59 Heat of formation + Delta-G solvation = -16.949482 kcal Electronic energy + Delta-G solvation = -32405.010921 eV Core-core repulsion = 28340.917907 eV Total energy + Delta-G solvation = -4064.093014 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -40.93546 -39.05236 -37.51912 -36.68989 -35.01458 -33.86883 -32.58715 -31.70970 -31.09503 -30.68938 -28.76840 -25.93675 -25.77317 -24.85720 -24.11586 -22.48175 -21.57734 -20.86022 -20.55234 -19.52905 -18.90307 -17.66362 -17.08112 -16.56304 -16.40872 -15.84863 -15.37905 -14.99526 -14.88323 -14.50758 -14.37336 -14.07777 -13.99785 -13.48160 -13.38914 -13.30851 -13.12846 -12.90655 -12.70857 -12.56806 -12.16710 -11.81559 -11.67530 -11.52450 -11.37956 -11.14803 -11.09276 -10.98490 -10.75858 -10.65562 -10.49277 -10.32904 -10.08202 -9.89943 -9.77077 -9.70774 -9.51956 -9.43579 -8.94976 -8.70148 -8.35356 -7.91522 -6.45076 -5.51252 -2.96009 2.45639 3.28753 3.42668 3.52389 3.58174 3.58526 3.64042 4.04975 4.45265 4.50748 4.59378 4.71174 4.80412 4.88852 4.92150 4.95531 5.10623 5.15933 5.32346 5.36839 5.45172 5.54411 5.58637 5.63544 5.69008 5.76662 5.80940 5.84512 5.95831 6.01597 6.12100 6.15567 6.24264 6.34743 6.60068 6.64178 6.64398 6.83398 6.90944 6.95325 7.03949 7.19301 7.55758 7.59863 7.81507 7.91444 8.07079 8.23745 8.65091 8.70031 8.97686 9.49333 10.12586 10.62580 11.54245 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.014397 B = 0.003702 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.368231 B = 7560.820881 C = 8093.480804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.599 5.599 3 C -0.236 4.236 4 H 0.067 0.933 5 C -0.002 4.002 6 N -0.914 5.914 7 Si 0.901 3.099 8 H -0.279 1.279 9 H -0.292 1.292 10 H -0.292 1.292 11 C 0.153 3.847 12 C 0.124 3.876 13 H 0.072 0.928 14 C -0.114 4.114 15 C -0.135 4.135 16 C 0.102 3.898 17 N -0.610 5.610 18 C 0.549 3.451 19 O -0.512 6.512 20 C 0.147 3.853 21 H 0.082 0.918 22 C -0.125 4.125 23 C -0.116 4.116 24 C -0.138 4.138 25 C 0.116 3.884 26 N -0.621 5.621 27 C 0.697 3.303 28 N -0.870 5.870 29 O -0.536 6.536 30 H 0.029 0.971 31 H 0.039 0.961 32 H -0.008 1.008 33 H 0.248 0.752 34 H 0.071 0.929 35 H 0.028 0.972 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.060 0.940 41 H 0.063 0.937 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.065 0.935 45 H 0.070 0.930 46 H 0.075 0.925 47 H 0.070 0.930 48 H 0.078 0.922 49 H 0.070 0.930 50 H 0.390 0.610 51 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.053 -24.335 1.447 27.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.321 5.321 3 C -0.366 4.366 4 H 0.085 0.915 5 C -0.199 4.199 6 N -0.561 5.561 7 Si 0.732 3.268 8 H -0.204 1.204 9 H -0.219 1.219 10 H -0.219 1.219 11 C 0.025 3.975 12 C 0.019 3.981 13 H 0.090 0.910 14 C -0.152 4.152 15 C -0.173 4.173 16 C -0.022 4.022 17 N -0.346 5.346 18 C 0.336 3.664 19 O -0.386 6.386 20 C 0.040 3.960 21 H 0.100 0.900 22 C -0.164 4.164 23 C -0.153 4.153 24 C -0.176 4.176 25 C -0.008 4.008 26 N -0.363 5.363 27 C 0.397 3.603 28 N -0.441 5.441 29 O -0.409 6.409 30 H 0.047 0.953 31 H 0.058 0.942 32 H 0.011 0.989 33 H 0.058 0.942 34 H 0.089 0.911 35 H 0.046 0.954 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.099 0.901 43 H 0.096 0.904 44 H 0.084 0.916 45 H 0.088 0.912 46 H 0.094 0.906 47 H 0.089 0.911 48 H 0.097 0.903 49 H 0.088 0.912 50 H 0.220 0.780 51 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 11.717 -23.046 1.358 25.889 hybrid contribution 0.566 0.543 -0.316 0.845 sum 12.283 -22.503 1.043 25.658 Atomic orbital electron populations 1.20797 0.83026 0.95122 0.99019 1.43967 1.01659 1.00906 1.85597 1.19338 0.99264 0.85892 1.32149 0.91493 1.25034 0.97890 0.98416 0.98583 1.70054 1.18815 1.27004 1.40204 0.86213 0.78731 0.84555 0.77344 1.20373 1.21879 1.21891 1.21124 0.97237 0.87092 0.92016 1.22538 0.88213 0.85860 1.01448 0.90999 1.22609 0.96995 0.96752 0.98835 1.22829 0.97875 0.98147 0.98473 1.22266 0.93885 0.89897 0.96129 1.48490 1.11296 1.12114 1.62718 1.19145 0.80777 0.88624 0.77885 1.90712 1.70235 1.37600 1.40099 1.21092 0.96092 0.95324 0.83509 0.89978 1.21856 0.95063 0.99006 1.00448 1.21487 0.99791 0.97550 0.96510 1.21953 0.97088 1.02129 0.96427 1.21628 0.90049 0.88441 1.00663 1.47095 1.50087 1.34974 1.04142 1.16020 0.81935 0.81644 0.80718 1.43124 1.53829 1.39811 1.07314 1.91157 1.33791 1.32138 1.83806 0.95269 0.94206 0.98948 0.94181 0.91095 0.95389 0.90054 0.91249 0.91078 0.90697 0.92202 0.91852 0.90061 0.90356 0.91644 0.91176 0.90634 0.91148 0.90348 0.91224 0.77990 0.75400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.39 7.79 59.85 0.47 4.85 16 2 N -0.60 -16.82 2.87 -181.12 -0.52 -17.34 16 3 C -0.24 -7.24 9.64 -15.06 -0.15 -7.38 16 4 H 0.07 2.12 7.84 -52.49 -0.41 1.71 16 5 C 0.00 -0.07 5.16 -17.43 -0.09 -0.16 16 6 N -0.91 -28.02 10.66 55.49 0.59 -27.43 16 7 Si 0.90 23.76 29.56 -169.99 -5.03 18.74 16 8 H -0.28 -7.31 7.11 56.52 0.40 -6.91 16 9 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 10 H -0.29 -7.67 7.11 56.52 0.40 -7.27 16 11 C 0.15 3.86 5.21 -4.04 -0.02 3.84 16 12 C 0.12 2.71 3.13 -66.95 -0.21 2.50 16 13 H 0.07 1.83 8.14 -51.93 -0.42 1.41 16 14 C -0.11 -2.10 5.43 -24.89 -0.14 -2.23 16 15 C -0.14 -1.83 7.10 -24.47 -0.17 -2.00 16 16 C 0.10 1.39 6.56 -2.41 -0.02 1.38 16 17 N -0.61 -11.15 3.06 -162.88 -0.50 -11.65 16 18 C 0.55 10.27 4.16 -10.99 -0.05 10.22 16 19 O -0.51 -12.11 13.44 -19.04 -0.26 -12.37 16 20 C 0.15 1.92 3.12 -68.75 -0.21 1.71 16 21 H 0.08 0.90 5.99 -51.93 -0.31 0.59 16 22 C -0.12 -1.38 5.31 -26.61 -0.14 -1.52 16 23 C -0.12 -0.83 5.89 -26.69 -0.16 -0.99 16 24 C -0.14 -0.87 6.08 -26.61 -0.16 -1.03 16 25 C 0.12 0.79 6.43 -3.71 -0.02 0.77 16 26 N -0.62 -7.34 2.97 -172.23 -0.51 -7.85 16 27 C 0.70 10.32 8.29 -86.92 -0.72 9.60 16 28 N -0.87 -8.65 8.79 27.63 0.24 -8.41 16 29 O -0.54 -10.97 12.56 -19.31 -0.24 -11.22 16 30 H 0.03 0.80 7.21 -51.93 -0.37 0.43 16 31 H 0.04 1.13 7.31 -51.93 -0.38 0.75 16 32 H -0.01 -0.19 7.86 -51.93 -0.41 -0.60 16 33 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.07 2.02 5.99 -51.93 -0.31 1.71 16 35 H 0.03 0.69 7.73 -51.93 -0.40 0.29 16 36 H 0.08 1.64 8.14 -51.93 -0.42 1.21 16 37 H 0.07 1.30 7.33 -51.93 -0.38 0.92 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.06 0.67 6.69 -51.93 -0.35 0.32 16 42 H 0.08 1.11 7.91 -51.92 -0.41 0.69 16 43 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.08 0.31 8.14 -51.92 -0.42 -0.11 16 47 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.08 0.37 5.56 -51.93 -0.29 0.08 16 49 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 50 H 0.39 2.41 6.29 -40.82 -0.26 2.15 16 51 H 0.41 3.99 8.93 -40.82 -0.36 3.63 16 LS Contribution 385.05 15.07 5.80 5.80 Total: -1.00 -38.98 385.05 -10.64 -49.61 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -8.43 Total: 2.57 kcal Atomic # 6 Polarization: 21.33 SS G_CDS: -1.79 Total: 19.54 kcal Atomic # 7 Polarization: -71.98 SS G_CDS: -0.70 Total: -72.68 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -0.50 Total: -23.59 kcal Atomic # 14 Polarization: 23.76 SS G_CDS: -5.03 Total: 18.74 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -38.98 -10.64 -49.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328782178.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.665 kcal (2) G-P(sol) polarization free energy of solvation -38.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds