Wall clock time and date at job start Tue Mar 31 2020 20:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36945 * 119.99781 * 2 1 4 4 H 1.07999 * 119.99433 * 205.16801 * 3 2 1 5 5 C 1.38809 * 120.00196 * 25.16562 * 3 2 1 6 6 N 1.31625 * 119.99991 * 9.42952 * 5 3 2 7 7 Si 1.86798 * 119.99973 * 189.43438 * 5 3 2 8 8 H 1.48499 * 109.47374 * 5.00044 * 7 5 3 9 9 H 1.48498 * 109.47447 * 125.00421 * 7 5 3 10 10 H 1.48501 * 109.46866 * 245.00590 * 7 5 3 11 11 C 1.46499 * 120.00279 * 179.97438 * 2 1 3 12 12 C 1.53000 * 109.46873 * 271.93664 * 11 2 1 13 13 H 1.09002 * 109.99739 * 307.92216 * 12 11 2 14 14 C 1.54329 * 109.88463 * 69.01892 * 12 11 2 15 15 C 1.55154 * 102.94098 * 141.60661 * 14 12 11 16 16 C 1.55127 * 101.49001 * 324.33191 * 15 14 12 17 17 N 1.47023 * 109.88243 * 186.82597 * 12 11 2 18 18 C 1.34780 * 125.64518 * 61.60369 * 17 12 11 19 19 O 1.21280 * 120.00172 * 355.20329 * 18 17 12 20 20 C 1.50697 * 119.99766 * 175.20338 * 18 17 12 21 21 H 1.08999 * 109.58967 * 357.30096 * 20 18 17 22 22 C 1.53193 * 109.58949 * 236.87085 * 20 18 17 23 23 C 1.53034 * 109.34186 * 185.59513 * 22 20 18 24 24 C 1.53040 * 109.53855 * 61.31777 * 23 22 20 25 25 C 1.53191 * 109.33805 * 298.68062 * 24 23 22 26 26 N 1.46921 * 108.77527 * 54.62248 * 25 24 23 27 27 C 1.34771 * 120.63243 * 126.41404 * 26 25 24 28 28 N 1.34780 * 120.00223 * 354.35097 * 27 26 25 29 29 O 1.21592 * 120.00456 * 174.35554 * 27 26 25 30 30 H 1.09001 * 109.47089 * 273.97584 * 1 2 3 31 31 H 1.09003 * 109.46929 * 33.97501 * 1 2 3 32 32 H 1.08992 * 109.46775 * 153.97178 * 1 2 3 33 33 H 0.96994 * 119.99481 * 179.97438 * 6 5 3 34 34 H 1.08996 * 109.47440 * 151.93596 * 11 2 1 35 35 H 1.09002 * 109.46561 * 31.93276 * 11 2 1 36 36 H 1.08995 * 110.72213 * 259.97041 * 14 12 11 37 37 H 1.08997 * 110.71770 * 23.24735 * 14 12 11 38 38 H 1.09003 * 111.00589 * 82.57697 * 15 14 12 39 39 H 1.09005 * 111.00372 * 206.38968 * 15 14 12 40 40 H 1.08996 * 110.49762 * 278.45573 * 16 15 14 41 41 H 1.08996 * 110.34434 * 156.05705 * 16 15 14 42 42 H 1.09010 * 109.49342 * 305.53332 * 22 20 18 43 43 H 1.09000 * 109.49771 * 65.62188 * 22 20 18 44 44 H 1.08998 * 109.43334 * 301.30940 * 23 22 20 45 45 H 1.08998 * 109.48349 * 181.35336 * 23 22 20 46 46 H 1.09007 * 109.49485 * 178.71770 * 24 23 22 47 47 H 1.08996 * 109.50112 * 58.65192 * 24 23 22 48 48 H 1.09005 * 109.58747 * 174.41109 * 25 24 23 49 49 H 1.09004 * 109.58676 * 294.83073 * 25 24 23 50 50 H 0.97008 * 119.99434 * 5.01816 * 28 27 26 51 51 H 0.96996 * 120.00100 * 185.00600 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1528 1.2303 -0.3978 5 6 1.5545 2.3311 0.5112 6 7 0.4134 2.2453 1.1617 7 14 2.3728 3.9937 0.2758 8 1 3.5721 3.8377 -0.5858 9 1 1.4172 4.9287 -0.3706 10 1 2.7797 4.5366 1.5968 11 6 2.1976 -1.2687 0.0006 12 6 2.4104 -1.7340 1.4425 13 1 2.8586 -0.9330 2.0304 14 6 1.0605 -2.1495 2.0646 15 6 1.4377 -3.3901 2.9165 16 6 2.5315 -4.0489 2.0356 17 7 3.2827 -2.9173 1.4624 18 6 4.5564 -2.9616 1.0239 19 8 5.0462 -1.9919 0.4847 20 6 5.3719 -4.2161 1.2034 21 1 4.7861 -4.9582 1.7458 22 6 6.6476 -3.8917 1.9871 23 6 7.5366 -5.1359 2.0457 24 6 7.9328 -5.5493 0.6265 25 6 6.6716 -5.8927 -0.1725 26 7 5.7483 -4.7515 -0.1121 27 6 5.2555 -4.2063 -1.2418 28 7 5.6951 -4.6317 -2.4428 29 8 4.4143 -3.3307 -1.1777 30 1 -0.3633 0.0713 1.0252 31 1 -0.3633 0.8523 -0.5743 32 1 -0.3632 -0.9234 -0.4509 33 1 -0.0022 3.0455 1.5191 34 1 3.1646 -1.1302 -0.4829 35 1 1.6239 -2.0196 -0.5427 36 1 0.6657 -1.3536 2.6960 37 1 0.3445 -2.4182 1.2880 38 1 1.8387 -3.0917 3.8852 39 1 0.5827 -4.0552 3.0381 40 1 2.0766 -4.6427 1.2428 41 1 3.1874 -4.6691 2.6465 42 1 7.1849 -3.0843 1.4893 43 1 6.3846 -3.5843 2.9992 44 1 6.9901 -5.9500 2.5219 45 1 8.4341 -4.9146 2.6234 46 1 8.5845 -6.4220 0.6703 47 1 8.4582 -4.7269 0.1413 48 1 6.9394 -6.0915 -1.2103 49 1 6.1940 -6.7725 0.2587 50 1 6.3112 -5.3790 -2.4969 51 1 5.3952 -4.1906 -3.2530 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328782178.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:58 Heat of formation + Delta-G solvation = -45.883873 kcal Electronic energy + Delta-G solvation = -32406.265610 eV Core-core repulsion = 28340.917907 eV Total energy + Delta-G solvation = -4065.347703 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.04423 -40.41699 -38.61981 -38.05620 -37.07364 -34.93586 -33.66262 -33.29970 -32.61118 -31.79285 -30.50765 -28.04997 -26.78976 -26.72157 -25.06368 -23.82838 -22.70571 -22.46455 -21.92474 -20.56543 -20.15282 -18.85478 -18.73523 -18.14876 -17.67840 -17.32948 -16.65339 -16.36526 -15.92745 -15.90414 -15.59588 -15.36904 -15.22387 -15.05888 -14.97011 -14.64588 -14.29031 -14.25988 -14.15518 -13.75050 -13.54213 -13.37775 -13.32268 -13.02347 -12.81528 -12.57109 -12.43991 -12.34551 -12.15870 -12.09677 -11.98469 -11.90649 -11.72753 -11.64097 -11.58476 -11.43860 -10.95092 -10.68636 -10.60700 -10.42548 -9.63651 -9.46047 -8.70848 -7.86381 -5.35109 1.37691 1.38595 1.44942 1.51460 2.11733 2.15361 2.35822 2.48200 3.23598 3.27887 3.51814 3.70046 3.81760 3.82424 3.86853 3.97358 4.00594 4.09204 4.13037 4.26492 4.38728 4.48188 4.53141 4.56369 4.61907 4.69350 4.79083 4.83234 4.88377 4.94922 5.04155 5.04763 5.13043 5.13925 5.18367 5.20990 5.22365 5.31712 5.41627 5.45381 5.47760 5.58228 5.67897 5.71626 5.80523 6.00949 6.32457 6.84885 6.95004 7.14807 7.50677 7.74203 7.85405 8.29477 9.16799 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.014397 B = 0.003702 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.368231 B = 7560.820881 C = 8093.480804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.184 3.816 2 N -0.614 5.614 3 C -0.261 4.261 4 H 0.041 0.959 5 C -0.043 4.043 6 N -0.930 5.930 7 Si 0.966 3.034 8 H -0.281 1.281 9 H -0.279 1.279 10 H -0.284 1.284 11 C 0.169 3.831 12 C 0.134 3.866 13 H 0.020 0.980 14 C -0.109 4.109 15 C -0.118 4.118 16 C 0.098 3.902 17 N -0.615 5.615 18 C 0.538 3.462 19 O -0.576 6.576 20 C 0.156 3.844 21 H 0.117 0.883 22 C -0.123 4.123 23 C -0.109 4.109 24 C -0.135 4.135 25 C 0.108 3.892 26 N -0.619 5.619 27 C 0.684 3.316 28 N -0.849 5.849 29 O -0.601 6.601 30 H 0.018 0.982 31 H 0.014 0.986 32 H 0.021 0.979 33 H 0.251 0.749 34 H 0.028 0.972 35 H 0.030 0.970 36 H 0.058 0.942 37 H 0.067 0.933 38 H 0.080 0.920 39 H 0.113 0.887 40 H 0.068 0.932 41 H 0.108 0.892 42 H 0.042 0.958 43 H 0.081 0.919 44 H 0.092 0.908 45 H 0.080 0.920 46 H 0.111 0.889 47 H 0.048 0.952 48 H 0.099 0.901 49 H 0.100 0.900 50 H 0.411 0.589 51 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.888 -28.353 2.756 31.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.338 5.338 3 C -0.392 4.392 4 H 0.059 0.941 5 C -0.238 4.238 6 N -0.577 5.577 7 Si 0.794 3.206 8 H -0.207 1.207 9 H -0.205 1.205 10 H -0.210 1.210 11 C 0.042 3.958 12 C 0.028 3.972 13 H 0.038 0.962 14 C -0.147 4.147 15 C -0.155 4.155 16 C -0.023 4.023 17 N -0.350 5.350 18 C 0.328 3.672 19 O -0.455 6.455 20 C 0.048 3.952 21 H 0.134 0.866 22 C -0.162 4.162 23 C -0.146 4.146 24 C -0.173 4.173 25 C -0.013 4.013 26 N -0.360 5.360 27 C 0.383 3.617 28 N -0.422 5.422 29 O -0.480 6.480 30 H 0.036 0.964 31 H 0.033 0.967 32 H 0.040 0.960 33 H 0.060 0.940 34 H 0.047 0.953 35 H 0.049 0.951 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.099 0.901 39 H 0.131 0.869 40 H 0.087 0.913 41 H 0.126 0.874 42 H 0.061 0.939 43 H 0.099 0.901 44 H 0.111 0.889 45 H 0.098 0.902 46 H 0.129 0.871 47 H 0.067 0.933 48 H 0.117 0.883 49 H 0.118 0.882 50 H 0.244 0.756 51 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 12.598 -27.187 2.676 30.083 hybrid contribution 0.370 1.765 -0.792 1.970 sum 12.967 -25.422 1.884 28.600 Atomic orbital electron populations 1.20563 0.82104 0.95376 0.98058 1.44101 1.02335 1.01178 1.86177 1.19313 0.98814 0.87725 1.33342 0.94093 1.25715 0.98548 1.01473 0.98087 1.70180 1.19451 1.27942 1.40128 0.85236 0.77812 0.80175 0.77415 1.20651 1.20515 1.21041 1.20889 0.94648 0.86088 0.94199 1.21949 0.90677 0.86642 0.97939 0.96215 1.22452 0.94455 0.98664 0.99166 1.22836 0.99158 0.95839 0.97689 1.22592 0.94271 0.88669 0.96785 1.48578 1.11392 1.12225 1.62851 1.20276 0.80865 0.89865 0.76160 1.90670 1.71672 1.40431 1.42701 1.21097 0.96292 0.92966 0.84830 0.86592 1.21874 0.94584 1.00122 0.99619 1.21501 0.99534 0.95990 0.97575 1.21970 0.97106 1.02802 0.95434 1.22067 0.89415 0.87221 1.02614 1.47198 1.50374 1.35740 1.02678 1.16424 0.81719 0.81213 0.82325 1.42885 1.53360 1.39975 1.05936 1.91124 1.36909 1.35098 1.84833 0.96394 0.96725 0.96035 0.93993 0.95327 0.95139 0.92354 0.91428 0.90119 0.86883 0.91328 0.87430 0.93928 0.90060 0.88942 0.90156 0.87101 0.93290 0.88281 0.88193 0.75560 0.75285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 10.13 7.79 127.77 0.99 11.12 16 2 N -0.61 -36.70 2.87 -726.93 -2.08 -38.78 16 3 C -0.26 -17.06 9.64 84.03 0.81 -16.25 16 4 H 0.04 2.83 7.84 -2.91 -0.02 2.81 16 5 C -0.04 -2.68 5.16 84.86 0.44 -2.24 16 6 N -0.93 -58.65 10.66 21.65 0.23 -58.42 16 7 Si 0.97 50.54 29.56 68.60 2.03 52.56 16 8 H -0.28 -14.72 7.11 99.48 0.71 -14.01 16 9 H -0.28 -14.01 7.11 99.48 0.71 -13.30 16 10 H -0.28 -14.47 7.11 99.48 0.71 -13.76 16 11 C 0.17 9.15 5.21 86.38 0.45 9.60 16 12 C 0.13 6.21 3.13 45.34 0.14 6.35 16 13 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 14 C -0.11 -4.07 5.43 31.78 0.17 -3.90 16 15 C -0.12 -2.86 7.10 32.06 0.23 -2.63 16 16 C 0.10 2.41 6.56 86.93 0.57 2.98 16 17 N -0.62 -22.96 3.06 -787.61 -2.41 -25.38 16 18 C 0.54 20.97 4.16 87.66 0.36 21.33 16 19 O -0.58 -29.73 13.44 20.49 0.28 -29.46 16 20 C 0.16 3.85 3.12 44.23 0.14 3.99 16 21 H 0.12 2.06 5.99 -2.39 -0.01 2.04 16 22 C -0.12 -2.59 5.31 30.67 0.16 -2.43 16 23 C -0.11 -1.16 5.89 30.62 0.18 -0.98 16 24 C -0.13 -1.20 6.08 30.67 0.19 -1.01 16 25 C 0.11 1.04 6.43 86.36 0.56 1.60 16 26 N -0.62 -13.63 2.97 -817.06 -2.43 -16.06 16 27 C 0.68 20.38 8.29 179.06 1.48 21.87 16 28 N -0.85 -16.33 8.79 -184.74 -1.62 -17.95 16 29 O -0.60 -26.08 12.56 19.51 0.25 -25.83 16 30 H 0.02 1.02 7.21 -2.39 -0.02 1.00 16 31 H 0.01 0.84 7.31 -2.39 -0.02 0.82 16 32 H 0.02 1.03 7.86 -2.39 -0.02 1.01 16 33 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 34 H 0.03 1.78 5.99 -2.39 -0.01 1.77 16 35 H 0.03 1.59 7.73 -2.39 -0.02 1.57 16 36 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.07 2.52 7.33 -2.39 -0.02 2.51 16 38 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.11 1.98 8.14 -2.38 -0.02 1.96 16 40 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.11 1.73 6.69 -2.39 -0.02 1.71 16 42 H 0.04 1.22 7.91 -2.38 -0.02 1.20 16 43 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 45 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.11 0.30 8.14 -2.38 -0.02 0.28 16 47 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 48 H 0.10 0.53 5.56 -2.38 -0.01 0.52 16 49 H 0.10 0.48 8.14 -2.38 -0.02 0.46 16 50 H 0.41 4.15 6.29 -92.70 -0.58 3.57 16 51 H 0.42 8.07 8.93 -92.71 -0.83 7.24 16 Total: -1.00 -96.41 385.05 0.65 -95.77 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -0.46 Total: 14.16 kcal Atomic # 6 Polarization: 42.52 SS G_CDS: 6.88 Total: 49.39 kcal Atomic # 7 Polarization: -148.27 SS G_CDS: -8.32 Total: -156.59 kcal Atomic # 8 Polarization: -55.81 SS G_CDS: 0.52 Total: -55.29 kcal Atomic # 14 Polarization: 50.54 SS G_CDS: 2.03 Total: 52.56 kcal Total: -96.41 0.65 -95.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328782178.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.884 kcal (2) G-P(sol) polarization free energy of solvation -96.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds