Wall clock time and date at job start Tue Mar 31 2020 21:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86802 * 120.00320 * 2 1 4 4 H 1.48500 * 109.46973 * 274.44592 * 3 2 1 5 5 H 1.48507 * 109.46708 * 34.43839 * 3 2 1 6 6 H 1.48496 * 109.47356 * 154.43999 * 3 2 1 7 7 C 1.38816 * 120.00072 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00187 * 189.01146 * 7 2 1 9 9 N 1.36936 * 119.99966 * 9.00539 * 7 2 1 10 10 C 1.48153 * 127.83861 * 15.57683 * 9 7 2 11 11 C 1.54385 * 104.61788 * 140.39248 * 10 9 7 12 12 H 1.09004 * 118.18110 * 244.20217 * 11 10 9 13 13 C 1.52997 * 118.12211 * 87.19322 * 11 10 9 14 14 H 1.08993 * 117.44227 * 16.05982 * 13 11 10 15 15 C 1.53006 * 117.44223 * 160.81011 * 13 11 10 16 16 N 1.46490 * 109.47296 * 184.99750 * 15 13 11 17 17 C 1.34776 * 120.00488 * 179.97438 * 16 15 13 18 18 O 1.21287 * 119.99405 * 0.02562 * 17 16 15 19 19 C 1.50700 * 120.00604 * 180.02562 * 17 16 15 20 20 H 1.08998 * 109.46820 * 345.00493 * 19 17 16 21 21 F 1.39902 * 109.47011 * 105.00196 * 19 17 16 22 22 C 1.52999 * 109.47345 * 225.00230 * 19 17 16 23 23 C 1.52999 * 109.47160 * 174.99532 * 22 19 17 24 24 C 1.52993 * 109.47225 * 295.00518 * 23 22 19 25 25 C 1.53004 * 109.47029 * 179.97438 * 24 23 22 26 26 C 1.53006 * 109.46944 * 59.99637 * 25 24 23 27 27 C 1.53000 * 109.47146 * 300.00273 * 26 25 24 28 28 C 1.52996 * 109.46985 * 174.99965 * 23 22 19 29 29 C 1.53004 * 60.55477 * 268.45335 * 13 11 10 30 30 H 1.09001 * 119.54329 * 248.22698 * 29 13 11 31 31 C 1.48147 * 127.84085 * 195.54579 * 9 7 2 32 32 H 0.96999 * 120.00468 * 0.02562 * 1 2 3 33 33 H 1.09002 * 110.40246 * 21.60542 * 10 9 7 34 34 H 1.09002 * 110.40373 * 259.18145 * 10 9 7 35 35 H 1.09004 * 109.47301 * 64.99377 * 15 13 11 36 36 H 1.08999 * 109.46429 * 305.00051 * 15 13 11 37 37 H 0.97007 * 120.00239 * 0.02562 * 16 15 13 38 38 H 1.08998 * 109.47061 * 295.00100 * 22 19 17 39 39 H 1.09008 * 109.46638 * 54.99695 * 22 19 17 40 40 H 1.09000 * 109.46584 * 55.00299 * 23 22 19 41 41 H 1.09000 * 109.47161 * 299.99427 * 24 23 22 42 42 H 1.08994 * 109.47600 * 59.99819 * 24 23 22 43 43 H 1.08998 * 109.47245 * 300.00270 * 25 24 23 44 44 H 1.08997 * 109.47362 * 179.97438 * 25 24 23 45 45 H 1.08999 * 109.47011 * 179.97438 * 26 25 24 46 46 H 1.09010 * 109.47041 * 60.00306 * 26 25 24 47 47 H 1.09000 * 109.46677 * 299.99894 * 27 26 25 48 48 H 1.09001 * 109.46661 * 180.02562 * 27 26 25 49 49 H 1.08999 * 109.47364 * 300.00176 * 28 23 22 50 50 H 1.09000 * 109.47296 * 60.00160 * 28 23 22 51 51 H 1.09010 * 110.40320 * 100.82240 * 31 9 7 52 52 H 1.09002 * 110.50585 * 338.44885 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4037 2.1006 -1.3959 5 1 1.4977 2.6237 0.7918 6 1 3.5915 1.4149 0.6040 7 6 2.0102 -1.2022 0.0005 8 1 3.0802 -1.2079 0.1470 9 7 1.3382 -2.3808 -0.1846 10 6 -0.0353 -2.5717 -0.7062 11 6 0.0616 -3.8184 -1.6117 12 1 -0.1269 -3.6959 -2.6783 13 6 -0.1195 -5.1939 -0.9667 14 1 -0.5672 -5.2280 0.0264 15 6 -0.4698 -6.3641 -1.8882 16 7 -0.7186 -7.5623 -1.0829 17 6 -1.0469 -8.7226 -1.6847 18 8 -1.1358 -8.7749 -2.8932 19 6 -1.3035 -9.9551 -0.8563 20 1 -0.9263 -9.7985 0.1543 21 9 -2.6790 -10.2058 -0.8070 22 6 -0.5893 -11.1518 -1.4876 23 6 -0.7455 -12.3749 -0.5817 24 6 -0.0220 -12.1243 0.7428 25 6 -0.1788 -13.3472 1.6489 26 6 0.4264 -14.5725 0.9610 27 6 -0.2971 -14.8230 -0.3637 28 6 -0.1399 -13.5998 -1.2699 29 6 1.2847 -4.5983 -1.0862 30 1 2.0074 -5.0568 -1.7613 31 6 1.8198 -3.7545 0.0908 32 1 -0.4851 0.8400 -0.0004 33 1 -0.3452 -1.7031 -1.2872 34 1 -0.7316 -2.7502 0.1132 35 1 0.3599 -6.5506 -2.5701 36 1 -1.3637 -6.1197 -2.4619 37 1 -0.6479 -7.5204 -0.1163 38 1 -1.0277 -11.3635 -2.4628 39 1 0.4694 -10.9212 -1.6074 40 1 -1.8038 -12.5520 -0.3899 41 1 1.0362 -11.9471 0.5510 42 1 -0.4534 -11.2516 1.2331 43 1 -1.2371 -13.5240 1.8407 44 1 0.3369 -13.1689 2.5924 45 1 0.3151 -15.4436 1.6066 46 1 1.4848 -14.3958 0.7691 47 1 -1.3554 -14.9998 -0.1718 48 1 0.1338 -15.6963 -0.8535 49 1 -0.6554 -13.7784 -2.2136 50 1 0.9183 -13.4227 -1.4619 51 1 1.4131 -4.1178 1.0347 52 1 2.9093 -3.7800 0.1124 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330359607.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:01 Heat of formation + Delta-G solvation = -79.029622 kcal Electronic energy + Delta-G solvation = -28995.948690 eV Core-core repulsion = 24909.243718 eV Total energy + Delta-G solvation = -4086.704972 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -48.94051 -40.98031 -40.21484 -39.51832 -36.43749 -35.06444 -34.50775 -32.76191 -31.62226 -30.44277 -28.92012 -28.67795 -26.81660 -25.11301 -23.48711 -22.87636 -22.14285 -21.76734 -21.07765 -20.84321 -20.58329 -18.90038 -18.71169 -17.92325 -17.07196 -16.82954 -16.45856 -16.35264 -16.02715 -15.81673 -15.46459 -15.22637 -15.09003 -14.95525 -14.72797 -14.64558 -14.49717 -14.10383 -13.93642 -13.39733 -13.33603 -13.18900 -13.12085 -12.94344 -12.88889 -12.74404 -12.60632 -12.31801 -12.11318 -11.98401 -11.95166 -11.93635 -11.79565 -11.76907 -11.32215 -11.10462 -10.96430 -10.84481 -10.79435 -10.72281 -10.53102 -10.16207 -8.90925 -7.92188 -5.28350 1.29306 1.46153 1.47745 1.56901 1.84722 2.47159 2.70606 3.24775 3.35262 3.44101 3.58951 3.64622 3.70669 3.75782 3.84082 3.89852 4.00346 4.04379 4.17487 4.26596 4.36204 4.41878 4.46178 4.49337 4.55627 4.61565 4.62497 4.65761 4.69229 4.70348 4.80620 4.88240 4.93798 5.01922 5.03174 5.08682 5.14201 5.21796 5.30948 5.33310 5.33965 5.35461 5.38009 5.43299 5.45151 5.50172 5.53127 5.64381 5.66476 6.17973 6.34424 7.00021 7.00931 7.68390 8.46339 9.21523 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.024219 B = 0.001735 C = 0.001675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.848611 B =16138.511136 C =16708.646751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.063 4.063 3 Si 0.979 3.021 4 H -0.288 1.288 5 H -0.294 1.294 6 H -0.266 1.266 7 C -0.240 4.240 8 H 0.081 0.919 9 N -0.621 5.621 10 C 0.188 3.812 11 C -0.178 4.178 12 H 0.112 0.888 13 C -0.109 4.109 14 H 0.112 0.888 15 C 0.160 3.840 16 N -0.702 5.702 17 C 0.488 3.512 18 O -0.567 6.567 19 C 0.086 3.914 20 H 0.137 0.863 21 F -0.202 7.202 22 C -0.128 4.128 23 C -0.082 4.082 24 C -0.121 4.121 25 C -0.120 4.120 26 C -0.120 4.120 27 C -0.119 4.119 28 C -0.113 4.113 29 C -0.158 4.158 30 H 0.125 0.875 31 C 0.148 3.852 32 H 0.249 0.751 33 H 0.051 0.949 34 H 0.003 0.997 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.419 0.581 38 H 0.069 0.931 39 H 0.093 0.907 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.059 0.941 44 H 0.067 0.933 45 H 0.064 0.936 46 H 0.062 0.938 47 H 0.058 0.942 48 H 0.065 0.935 49 H 0.058 0.942 50 H 0.066 0.934 51 H 0.029 0.971 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.122 -30.317 1.788 30.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.257 4.257 3 Si 0.807 3.193 4 H -0.215 1.215 5 H -0.221 1.221 6 H -0.190 1.190 7 C -0.369 4.369 8 H 0.099 0.901 9 N -0.345 5.345 10 C 0.063 3.937 11 C -0.199 4.199 12 H 0.130 0.870 13 C -0.128 4.128 14 H 0.130 0.870 15 C 0.037 3.963 16 N -0.355 5.355 17 C 0.273 3.727 18 O -0.446 6.446 19 C 0.047 3.953 20 H 0.154 0.846 21 F -0.183 7.183 22 C -0.166 4.166 23 C -0.101 4.101 24 C -0.158 4.158 25 C -0.158 4.158 26 C -0.158 4.158 27 C -0.157 4.157 28 C -0.151 4.151 29 C -0.177 4.177 30 H 0.143 0.857 31 C 0.023 3.977 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.021 0.979 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.257 0.743 38 H 0.088 0.912 39 H 0.112 0.888 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.077 0.923 44 H 0.086 0.914 45 H 0.082 0.918 46 H 0.081 0.919 47 H 0.077 0.923 48 H 0.084 0.916 49 H 0.077 0.923 50 H 0.085 0.915 51 H 0.047 0.953 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.201 -30.071 0.980 30.088 hybrid contribution -0.038 1.429 0.238 1.449 sum -0.240 -28.642 1.217 28.669 Atomic orbital electron populations 1.70085 1.06512 1.25691 1.57245 1.25733 0.96496 1.01284 1.02196 0.85058 0.77939 0.79001 0.77303 1.21458 1.22079 1.19005 1.19398 0.91343 0.83675 1.42454 0.90109 1.45531 1.13757 1.01296 1.73939 1.20799 0.86045 0.93697 0.93183 1.23920 1.04788 0.91359 0.99815 0.87015 1.22401 0.98160 0.91927 1.00314 0.87047 1.20740 1.01185 0.82020 0.92404 1.45989 1.68934 1.08722 1.11842 1.21484 0.76830 0.85656 0.88770 1.90725 1.51978 1.85659 1.16200 1.21822 0.77784 0.93155 1.02519 0.84556 1.92863 1.32645 1.94991 1.97793 1.22087 1.01723 0.92959 0.99832 1.21114 1.00596 0.93429 0.94932 1.21719 1.00979 0.98428 0.94660 1.21529 1.01090 0.94712 0.98434 1.21552 0.99832 0.98052 0.96359 1.21533 1.00705 0.97498 0.95918 1.21558 1.01171 0.94124 0.98226 1.23934 0.90458 1.02054 1.01259 0.85671 1.21304 0.97748 0.84197 0.94421 0.94156 0.93021 0.97920 0.90876 0.91437 0.74276 0.91188 0.88815 0.91241 0.91096 0.91157 0.92253 0.91380 0.91770 0.91897 0.92273 0.91610 0.92277 0.91517 0.95275 0.92443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.72 10.86 21.65 0.24 -56.48 16 2 C -0.06 -3.58 5.40 84.86 0.46 -3.12 16 3 Si 0.98 45.23 29.56 68.60 2.03 47.26 16 4 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 5 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 6 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 7 C -0.24 -13.32 10.35 84.03 0.87 -12.45 16 8 H 0.08 4.28 7.84 -2.91 -0.02 4.26 16 9 N -0.62 -31.48 3.38 -688.11 -2.33 -33.81 16 10 C 0.19 9.08 5.70 86.53 0.49 9.57 16 11 C -0.18 -6.40 6.85 -9.89 -0.07 -6.46 16 12 H 0.11 3.82 8.14 -2.38 -0.02 3.80 16 13 C -0.11 -2.91 5.39 -10.79 -0.06 -2.97 16 14 H 0.11 2.89 8.04 -2.39 -0.02 2.87 16 15 C 0.16 3.72 5.95 86.38 0.51 4.24 16 16 N -0.70 -13.20 5.56 -463.06 -2.57 -15.77 16 17 C 0.49 10.70 7.17 87.66 0.63 11.33 16 18 O -0.57 -17.43 16.61 -3.05 -0.05 -17.48 16 19 C 0.09 1.35 3.64 29.85 0.11 1.46 16 20 H 0.14 1.17 6.20 -2.39 -0.01 1.15 16 21 F -0.20 -4.18 16.66 44.97 0.75 -3.44 16 22 C -0.13 -1.84 4.16 30.59 0.13 -1.71 16 23 C -0.08 -0.95 2.15 -10.80 -0.02 -0.98 16 24 C -0.12 -1.11 4.96 30.59 0.15 -0.95 16 25 C -0.12 -1.09 5.92 30.60 0.18 -0.91 16 26 C -0.12 -1.08 5.92 30.60 0.18 -0.89 16 27 C -0.12 -1.16 5.92 30.61 0.18 -0.98 16 28 C -0.11 -1.24 5.21 30.61 0.16 -1.08 16 29 C -0.16 -4.94 6.74 -9.89 -0.07 -5.01 16 30 H 0.13 3.45 8.12 -2.39 -0.02 3.43 16 31 C 0.15 5.79 7.04 86.53 0.61 6.39 16 32 H 0.25 14.48 8.31 -92.71 -0.77 13.70 16 33 H 0.05 2.86 6.51 -2.39 -0.02 2.85 16 34 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 35 H 0.07 1.74 7.94 -2.39 -0.02 1.72 16 36 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.42 5.37 8.30 -92.70 -0.77 4.60 16 38 H 0.07 1.28 8.05 -2.39 -0.02 1.26 16 39 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 40 H 0.07 0.95 7.82 -2.39 -0.02 0.93 16 41 H 0.07 0.60 8.14 -2.39 -0.02 0.59 16 42 H 0.07 0.54 6.46 -2.39 -0.02 0.53 16 43 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 45 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 46 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 47 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 48 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 49 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 50 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 51 H 0.03 1.11 8.14 -2.38 -0.02 1.09 16 52 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -70.55 408.15 2.64 -67.91 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: 0.13 Total: 16.33 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: 4.45 Total: -4.52 kcal Atomic # 7 Polarization: -101.40 SS G_CDS: -4.66 Total: -106.07 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -0.05 Total: -17.48 kcal Atomic # 9 Polarization: -4.18 SS G_CDS: 0.75 Total: -3.44 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -70.55 2.64 -67.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330359607.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.116 kcal (2) G-P(sol) polarization free energy of solvation -70.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds