Wall clock time and date at job start Tue Mar 31 2020 20:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 114.00477 * 2 1 4 4 C 1.52996 * 109.47046 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.46912 * 178.14202 * 4 3 2 6 6 C 1.36745 * 127.13784 * 90.67017 * 5 4 3 7 7 C 1.50697 * 126.34487 * 0.02562 * 6 5 4 8 8 C 1.52991 * 109.47141 * 89.99830 * 7 6 5 9 9 C 1.50707 * 109.47135 * 179.97438 * 8 7 6 10 10 H 1.07997 * 119.99749 * 359.97438 * 9 8 7 11 11 C 1.37879 * 119.99782 * 180.02562 * 9 8 7 12 12 N 1.31510 * 120.00256 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99707 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47374 * 179.97438 * 13 11 9 15 15 H 1.48500 * 109.47346 * 300.00119 * 13 11 9 16 16 H 1.48503 * 109.47060 * 59.99697 * 13 11 9 17 17 N 1.30294 * 107.30474 * 180.26516 * 6 5 4 18 18 N 1.28528 * 110.05367 * 359.56222 * 17 6 5 19 19 C 1.31219 * 109.86150 * 0.44773 * 18 17 6 20 20 N 1.38584 * 126.47457 * 179.72716 * 19 18 17 21 21 C 1.46893 * 110.99942 * 297.55681 * 20 19 18 22 22 C 1.46901 * 110.99424 * 61.50683 * 20 19 18 23 23 C 1.53003 * 109.46626 * 169.99881 * 22 20 19 24 24 H 1.08995 * 110.45766 * 54.30417 * 23 22 20 25 25 C 1.54513 * 110.50777 * 176.90535 * 23 22 20 26 26 C 1.54477 * 104.06004 * 118.64597 * 25 23 22 27 27 O 1.44428 * 104.80689 * 23.97914 * 26 25 23 28 28 C 1.44641 * 105.36551 * 319.56428 * 27 26 25 29 29 H 1.08993 * 109.47099 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46855 * 299.99894 * 1 2 3 31 31 H 1.08998 * 109.47007 * 59.99843 * 1 2 3 32 32 H 1.09002 * 109.46688 * 59.99962 * 3 2 1 33 33 H 1.08999 * 109.46819 * 300.00320 * 3 2 1 34 34 H 1.09001 * 109.47044 * 58.14466 * 4 3 2 35 35 H 1.08995 * 109.47135 * 298.14179 * 4 3 2 36 36 H 1.09001 * 109.46904 * 329.99810 * 7 6 5 37 37 H 1.08997 * 109.47193 * 210.00070 * 7 6 5 38 38 H 1.08993 * 109.47471 * 59.99919 * 8 7 6 39 39 H 1.09001 * 109.47457 * 299.99469 * 8 7 6 40 40 H 0.96995 * 119.99931 * 0.02562 * 12 11 9 41 41 H 1.08997 * 109.47578 * 66.06119 * 21 20 19 42 42 H 1.09003 * 109.46927 * 186.05757 * 21 20 19 43 43 H 1.09003 * 109.47558 * 306.05176 * 21 20 19 44 44 H 1.08995 * 109.47223 * 289.99933 * 22 20 19 45 45 H 1.08995 * 109.47204 * 50.00210 * 22 20 19 46 46 H 1.09000 * 110.50671 * 237.28655 * 25 23 22 47 47 H 1.08994 * 110.51471 * 359.86568 * 25 23 22 48 48 H 1.09006 * 110.37316 * 142.80533 * 26 25 23 49 49 H 1.08999 * 110.37300 * 265.14344 * 26 25 23 50 50 H 1.09004 * 110.34510 * 281.59280 * 28 27 26 51 51 H 1.08998 * 110.50803 * 159.18859 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 4.1314 2.5221 -0.0454 6 6 4.4821 3.3057 1.0189 7 6 4.3280 2.9539 2.4761 8 6 5.5937 2.2482 2.9669 9 6 5.4399 1.8969 4.4244 10 1 4.5305 2.1519 4.9482 11 6 6.4605 1.2509 5.0892 12 7 7.5681 0.9409 4.4514 13 14 6.2702 0.8162 6.8959 14 1 7.4986 0.1311 7.3723 15 1 6.0574 2.0567 7.6839 16 1 5.1028 -0.0856 7.0677 17 7 4.9693 4.4150 0.5396 18 7 4.9589 4.3821 -0.7452 19 6 4.4516 3.2445 -1.1579 20 7 4.2742 2.8511 -2.4749 21 6 3.3413 3.7472 -3.1709 22 6 5.5607 2.7793 -3.1805 23 6 5.3592 2.1093 -4.5411 24 1 4.5811 2.6218 -5.1067 25 6 6.6836 2.0908 -5.3368 26 6 6.9757 0.5882 -5.5445 27 8 5.6865 -0.0554 -5.4463 28 6 5.0043 0.6165 -4.3622 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6887 1.8463 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 3.8545 0.6152 -0.8738 35 1 3.8597 0.6724 0.9053 36 1 3.4711 2.2920 2.6014 37 1 4.1718 3.8640 3.0551 38 1 6.4505 2.9101 2.8416 39 1 5.7499 1.3380 2.3880 40 1 7.6670 1.1670 3.5134 41 1 3.7845 4.7395 -3.2544 42 1 3.1367 3.3557 -4.1674 43 1 2.4104 3.8112 -2.6076 44 1 5.9521 3.7861 -3.3256 45 1 6.2672 2.1965 -2.5896 46 1 6.5594 2.5920 -6.2968 47 1 7.4813 2.5611 -4.7619 48 1 7.4102 0.4187 -6.5298 49 1 7.6438 0.2203 -4.7659 50 1 5.3687 0.2524 -3.4016 51 1 3.9270 0.4706 -4.4403 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341350428.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:59 Heat of formation + Delta-G solvation = -14.916869 kcal Electronic energy + Delta-G solvation = -30633.860089 eV Core-core repulsion = 26569.855216 eV Total energy + Delta-G solvation = -4064.004873 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.82257 -39.85335 -38.21828 -37.54997 -35.23633 -34.28948 -32.94488 -31.70415 -29.94934 -29.65429 -28.61017 -27.09156 -26.55309 -25.16638 -24.65437 -23.59973 -22.92452 -22.07398 -20.83513 -20.36758 -20.09820 -17.54399 -16.98916 -16.94080 -16.55382 -16.26720 -16.12198 -15.85606 -15.75354 -15.38765 -15.03587 -14.75709 -14.37515 -14.14744 -13.74605 -13.59898 -13.56069 -13.22449 -13.06282 -12.54367 -12.40376 -12.28035 -12.18313 -11.90014 -11.82060 -11.64353 -11.55750 -11.50749 -11.32288 -11.21488 -10.92661 -10.80564 -10.54033 -10.38725 -10.18345 -10.09346 -10.02102 -9.99331 -9.93071 -8.96072 -8.82623 -8.51850 -8.38994 -6.42297 -4.13392 1.84876 2.20087 3.06180 3.30938 3.41812 3.43789 3.62394 3.72236 3.85049 4.29348 4.39332 4.49362 4.56367 4.60833 4.72103 4.75910 4.79050 4.90311 4.99068 5.02455 5.06798 5.09516 5.13260 5.17307 5.23031 5.27942 5.35241 5.36843 5.42342 5.43134 5.47189 5.49819 5.52926 5.58889 5.61522 5.65155 5.69913 5.86802 6.14066 6.17042 6.25683 6.41839 6.47104 6.54195 6.74444 6.82029 7.21744 7.26853 7.36662 8.06851 8.37615 8.79248 8.95957 9.59444 10.98047 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.009825 B = 0.003081 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2849.085342 B = 9086.337804 C = 9904.969514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.384 6.384 3 C 0.055 3.945 4 C 0.114 3.886 5 N -0.461 5.461 6 C 0.217 3.783 7 C -0.026 4.026 8 C 0.019 3.981 9 C -0.605 4.605 10 H 0.052 0.948 11 C 0.018 3.982 12 N -0.908 5.908 13 Si 1.069 2.931 14 H -0.282 1.282 15 H -0.287 1.287 16 H -0.287 1.287 17 N -0.295 5.295 18 N -0.309 5.309 19 C 0.322 3.678 20 N -0.463 5.463 21 C 0.034 3.966 22 C 0.074 3.926 23 C -0.118 4.118 24 H 0.088 0.912 25 C -0.150 4.150 26 C 0.045 3.955 27 O -0.380 6.380 28 C 0.059 3.941 29 H 0.090 0.910 30 H 0.044 0.956 31 H 0.041 0.959 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.106 0.894 35 H 0.110 0.890 36 H 0.072 0.928 37 H 0.092 0.908 38 H 0.017 0.983 39 H 0.006 0.994 40 H 0.268 0.732 41 H 0.047 0.953 42 H 0.081 0.919 43 H 0.067 0.933 44 H 0.059 0.941 45 H 0.079 0.921 46 H 0.078 0.922 47 H 0.080 0.920 48 H 0.090 0.910 49 H 0.060 0.940 50 H 0.063 0.937 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.885 0.047 -19.807 22.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.302 6.302 3 C -0.023 4.023 4 C -0.009 4.009 5 N -0.155 5.155 6 C -0.049 4.049 7 C -0.066 4.066 8 C -0.019 4.019 9 C -0.643 4.643 10 H 0.071 0.929 11 C -0.187 4.187 12 N -0.544 5.544 13 Si 0.897 3.103 14 H -0.207 1.207 15 H -0.213 1.213 16 H -0.214 1.214 17 N -0.134 5.134 18 N -0.153 5.153 19 C -0.034 4.034 20 N -0.188 5.188 21 C -0.113 4.113 22 C -0.053 4.053 23 C -0.137 4.137 24 H 0.107 0.893 25 C -0.189 4.189 26 C -0.032 4.032 27 O -0.299 6.299 28 C -0.018 4.018 29 H 0.108 0.892 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.124 0.876 35 H 0.129 0.871 36 H 0.090 0.910 37 H 0.110 0.890 38 H 0.035 0.965 39 H 0.024 0.976 40 H 0.079 0.921 41 H 0.065 0.935 42 H 0.100 0.900 43 H 0.086 0.914 44 H 0.077 0.923 45 H 0.098 0.902 46 H 0.097 0.903 47 H 0.099 0.901 48 H 0.108 0.892 49 H 0.078 0.922 50 H 0.081 0.919 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.700 -0.112 -18.710 21.075 hybrid contribution -1.199 0.628 -1.213 1.818 sum -10.899 0.515 -19.923 22.715 Atomic orbital electron populations 1.22767 0.80299 1.03052 1.00120 1.87828 1.20227 1.26626 1.95490 1.22676 0.92972 0.85525 1.01128 1.21533 0.91996 0.80721 1.06677 1.46176 1.47161 1.16047 1.06155 1.25715 0.98178 0.87917 0.93134 1.20341 1.02048 1.02182 0.82009 1.19191 0.91353 0.94398 0.96945 1.21936 1.04730 1.42734 0.94949 0.92924 1.25860 0.92598 0.93962 1.06232 1.70782 1.26638 1.44551 1.12386 0.83536 0.75930 0.76502 0.74301 1.20732 1.21304 1.21375 1.74090 1.19300 1.18789 1.01237 1.74516 1.18723 1.16702 1.05326 1.22152 1.03825 0.89880 0.87589 1.58586 1.13350 1.50607 0.96300 1.22447 0.95358 0.94738 0.98793 1.22272 0.88778 1.00912 0.93313 1.22591 0.98271 0.97500 0.95337 0.89348 1.22968 0.97280 0.97689 1.00932 1.23402 0.86646 0.91041 1.02145 1.89149 1.28207 1.58841 1.53681 1.23448 0.98266 0.89596 0.90471 0.89198 0.93779 0.94061 0.92529 0.92706 0.87580 0.87138 0.90961 0.88972 0.96500 0.97622 0.92111 0.93471 0.90022 0.91411 0.92295 0.90210 0.90346 0.90110 0.89154 0.92161 0.91892 0.88830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.38 -4.67 10.70 -35.23 -0.38 -5.05 16 3 C 0.05 0.66 6.26 37.16 0.23 0.89 16 4 C 0.11 1.57 6.27 -4.04 -0.03 1.54 16 5 N -0.46 -7.47 2.81 -114.08 -0.32 -7.79 16 6 C 0.22 4.18 7.32 -154.01 -1.13 3.05 16 7 C -0.03 -0.52 5.35 -27.89 -0.15 -0.67 16 8 C 0.02 0.48 4.27 -27.88 -0.12 0.36 16 9 C -0.61 -16.64 9.11 -34.44 -0.31 -16.95 16 10 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 11 C 0.02 0.51 5.46 -17.82 -0.10 0.41 16 12 N -0.91 -27.56 13.65 55.43 0.76 -26.80 16 13 Si 1.07 24.77 29.90 -169.99 -5.08 19.69 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 15 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 16 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 17 N -0.29 -6.14 12.18 32.99 0.40 -5.74 16 18 N -0.31 -5.81 12.19 30.32 0.37 -5.44 16 19 C 0.32 5.05 6.38 -318.86 -2.04 3.01 16 20 N -0.46 -5.44 4.62 -182.38 -0.84 -6.29 16 21 C 0.03 0.33 9.23 60.06 0.55 0.88 16 22 C 0.07 0.80 4.02 -3.82 -0.02 0.78 16 23 C -0.12 -0.99 3.04 -89.05 -0.27 -1.27 16 24 H 0.09 0.67 6.42 -51.93 -0.33 0.33 16 25 C -0.15 -1.14 6.74 -25.16 -0.17 -1.31 16 26 C 0.04 0.38 7.64 37.93 0.29 0.67 16 27 O -0.38 -4.21 11.65 -35.23 -0.41 -4.62 16 28 C 0.06 0.57 7.06 37.93 0.27 0.84 16 29 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.11 1.67 7.84 -51.93 -0.41 1.26 16 36 H 0.07 1.32 7.90 -51.93 -0.41 0.91 16 37 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 38 H 0.02 0.46 8.01 -51.93 -0.42 0.04 16 39 H 0.01 0.14 8.01 -51.93 -0.42 -0.27 16 40 H 0.27 8.19 7.22 -40.82 -0.29 7.90 16 41 H 0.05 0.49 8.12 -51.93 -0.42 0.07 16 42 H 0.08 0.58 6.47 -51.93 -0.34 0.24 16 43 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 44 H 0.06 0.66 8.11 -51.93 -0.42 0.24 16 45 H 0.08 0.97 7.93 -51.93 -0.41 0.56 16 46 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.08 0.59 7.73 -51.93 -0.40 0.19 16 48 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 50 H 0.06 0.66 7.78 -51.93 -0.40 0.26 16 51 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 415.12 15.07 6.26 6.26 Total: -1.00 -33.47 415.12 -10.06 -43.54 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -8.95 Total: -1.41 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: -1.87 Total: -6.35 kcal Atomic # 7 Polarization: -52.42 SS G_CDS: 0.36 Total: -52.06 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: -0.79 Total: -9.67 kcal Atomic # 14 Polarization: 24.77 SS G_CDS: -5.08 Total: 19.69 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -33.47 -10.06 -43.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341350428.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.621 kcal (2) G-P(sol) polarization free energy of solvation -33.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds